Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 2.8e-278 961.4 534 100.0
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 6.5e-134 481.9 562 58.9
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 1.1e-130 471.1 564 58.7
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 4.8e-129 465.7 556 56.3
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 1.0e-126 458.0 562 56.8
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 1.9e-125 453.8 568 54.6
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 9.7e-122 441.4 558 56.5
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 6.7e-115 418.7 546 57.0
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 3.3e-114 416.4 546 56.8
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 2.8e-105 386.7 555 53.9
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 8.3e-105 385.2 551 53.5
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 1.1e-104 384.8 552 53.3
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 2.4e-104 383.6 553 54.6
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 3.1e-104 383.3 556 48.4
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 3.1e-59 233.8 489 37.0
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 8.4e-57 225.7 263 49.4
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 1.9e-56 224.6 509 37.7
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 3.2e-56 223.8 489 41.3
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 1.6e-55 221.5 487 39.6
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 1.6e-55 221.5 509 33.2
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 2.1e-55 221.1 524 38.7
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 1.0e-54 218.8 434 39.2
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 3.0e-54 217.2 429 38.7
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 8.7e-54 215.7 310 42.6
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 1.1e-53 215.3 472 39.6
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 2.1e-52 211.1 428 36.9
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 8.1e-52 209.1 511 34.8
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 8.1e-52 209.1 487 39.0
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 1.1e-51 208.8 432 38.9
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 4.0e-51 206.8 553 36.0
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 9.0e-51 205.7 535 36.1
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 9.0e-51 205.7 526 37.6
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 9.0e-51 205.7 508 38.0
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 1.5e-50 204.9 570 34.9
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 2.6e-50 204.1 532 36.3
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 3.4e-50 203.8 537 35.2
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 4.4e-50 203.4 429 36.8
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 1.3e-49 201.8 446 35.9
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 1.7e-49 201.4 433 34.4
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 2.9e-49 200.7 435 38.9
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 3.8e-49 200.3 259 45.9
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 4.9e-49 199.9 461 38.6
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 4.9e-49 199.9 173 57.8
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 8.4e-49 199.1 431 35.7
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 8.4e-49 199.1 494 39.7
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 1.1e-48 198.7 446 35.4
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 1.4e-48 198.4 524 33.0
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 1.9e-48 198.0 431 33.4
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 2.4e-48 197.6 437 35.0
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 2.4e-48 197.6 220 50.5
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 5.4e-48 196.4 431 33.2
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 1.2e-47 195.3 532 36.3
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 1.6e-47 194.9 253 45.1
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 2.7e-47 194.1 509 32.2
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 6.0e-47 193.0 509 32.2
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 1.0e-46 192.2 306 46.1
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 1.0e-46 192.2 430 36.5
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 1.0e-46 192.2 529 35.7
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 2.3e-46 191.0 435 33.3
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 3.0e-46 190.7 436 35.3
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 3.9e-46 190.3 442 34.4
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 5.1e-46 189.9 252 49.2
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 6.6e-46 189.5 226 46.5
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 3.3e-45 187.2 251 45.0
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 1.3e-44 185.3 159 56.6
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 1.6e-44 184.9 285 44.6
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 1.6e-44 184.9 271 43.9
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 2.1e-44 184.5 425 33.6
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 4.8e-44 183.3 193 49.2
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 4.8e-44 183.3 422 32.9
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 6.2e-44 183.0 440 33.0
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 6.2e-44 183.0 422 32.5
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 8.1e-44 182.6 197 47.2
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 1.1e-43 182.2 503 35.6
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 1.1e-43 182.2 431 34.8
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 1.8e-43 181.4 446 32.5
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 2.4e-43 181.0 278 43.9
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 3.1e-43 180.6 439 32.8
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 3.1e-43 180.6 422 32.9
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 6.9e-43 179.5 226 45.6
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 6.9e-43 179.5 525 35.0
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 1.2e-42 178.7 436 33.5
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.2e-42 178.7 282 42.6
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 1.5e-42 178.3 197 47.7
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 2.0e-42 177.9 435 34.7
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 4.5e-42 176.8 277 40.1
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 9.9e-42 175.6 453 31.6
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 1.3e-41 175.3 433 30.9
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 4.2e-40 170.2 284 39.1
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 7.1e-40 169.5 164 52.4
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 2.1e-39 167.9 172 50.0
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 7.9e-39 166.0 270 42.6
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 1.6e-31 141.7 430 28.4
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 1.0e-30 139.0 162 45.7
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 1.8e-30 138.3 187 41.2
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 8.2e-28 129.4 132 50.8
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 1.1e-27 129.0 269 34.9
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 1.1e-27 129.0 329 33.1
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 1.4e-27 128.6 165 42.4
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 1.8e-27 128.3 163 43.6
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 2.4e-27 127.9 473 27.5
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 1.3e-25 122.1 419 29.6
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 1.3e-25 122.1 419 29.6
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 1.3e-25 122.1 152 42.1
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 2.3e-22 111.3 362 29.3
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 1.9e-21 108.2 470 27.4
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 2.5e-21 107.8 142 45.1
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 3.3e-21 107.5 234 29.9
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 4.3e-21 107.1 357 27.7
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 5.0e-17 93.6 110 46.4
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 1.2e-15 89.0 61 65.6
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 3.3e-13 80.9 54 66.7
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 6.9e-11 73.2 114 39.5
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 9.1e-11 72.8 112 41.1


User provided reference genes

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