Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 5.6e-271 937.6 689 100.0
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 3.8e-118 429.9 720 44.7
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 3.8e-118 429.9 720 44.7
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.2e-117 426.4 753 42.1
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 4.6e-116 422.9 767 41.2
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 4.8e-113 412.9 740 43.5
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.4e-112 410.6 761 42.0
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.9e-107 393.3 761 40.3
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 4.8e-105 386.3 729 41.0
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.6e-100 371.3 741 40.2
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 2.2e-97 360.9 735 46.0
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.4e-96 358.2 724 48.2
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.3e-94 351.7 718 46.4
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 1.7e-94 351.3 741 46.0
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 2.2e-94 350.9 706 41.5
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 1.3e-91 341.7 743 45.4
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 7.9e-84 315.8 737 40.0
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 4.5e-79 300.1 716 39.4
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.3e-78 298.5 714 36.0
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 3.3e-74 283.9 637 36.3
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 6.7e-67 259.6 738 42.8
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 7.7e-63 246.1 776 40.9
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.1e-61 242.3 729 34.6
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 2.1e-60 238.0 689 39.0
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 3.6e-60 237.3 722 32.1
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.4e-58 230.3 738 31.4
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 7.5e-58 229.6 716 32.0
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.3e-57 228.8 716 32.4
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 2.7e-55 221.1 699 32.2
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.7e-55 221.1 746 31.2
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.5e-53 215.3 630 34.9
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 2.5e-53 214.5 733 31.0
AL8G26710 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.1e-52 211.5 793 38.1
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.1e-52 211.5 754 47.5
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 1.2e-50 205.7 734 30.4
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.4e-48 198.7 713 30.4
AT5G52310 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.9e-46 191.0 737 37.4
C02p19870 Brassica napus HOM05D004189 ORTHO05D004092 5.2e-43 180.3 703 37.7
BolC2t08122H Brassica oleracea HOM05D004189 ORTHO05D004092 5.2e-43 180.3 703 37.7
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.2e-42 179.1 751 29.0
BcaC03g14535 Brassica carinata HOM05D004189 ORTHO05D004092 2.2e-41 174.9 697 37.4
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 3.6e-36 157.5 855 35.1
BcaB05g21947 Brassica carinata HOM05D004189 ORTHO05D004092 4.7e-36 157.1 711 35.2
A02p11890 Brassica napus HOM05D004189 ORTHO05D004092 8.0e-36 156.4 689 35.0
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.7e-31 141.4 711 27.0
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 3.9e-30 137.5 735 27.2
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 9.5e-29 132.9 714 26.5
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 4.7e-28 130.6 713 26.5
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.3e-25 122.5 237 42.2
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 2.9e-25 121.3 676 26.3
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 6.4e-25 120.2 648 25.5
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 2.4e-24 118.2 243 40.3
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 7.1e-24 116.7 114 60.5
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 7.1e-24 116.7 153 47.7
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 7.1e-24 116.7 733 26.9
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 7.1e-24 116.7 238 42.9
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 1.2e-23 115.9 270 37.8
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.5e-23 114.4 652 24.4
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.0e-23 113.6 166 46.4
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 6.0e-23 113.6 246 38.6
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.7e-22 112.1 226 39.4
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.7e-22 112.1 150 47.3
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 2.3e-22 111.7 240 40.0
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.9e-22 110.9 166 45.8
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 6.6e-22 110.2 236 35.2
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 8.6e-22 109.8 257 36.6
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 1.1e-21 109.4 221 41.6
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 1.5e-21 109.0 250 38.8
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 1.9e-21 108.6 704 25.4
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 5.6e-21 107.1 709 25.7
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 5.6e-21 107.1 261 33.3
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 9.5e-21 106.3 713 24.8
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 1.2e-20 105.9 551 32.3
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 1.6e-20 105.5 206 39.8
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 2.8e-20 104.8 225 36.9
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 8.1e-20 103.2 753 24.8
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.1e-19 102.8 218 36.7
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.1e-19 102.8 141 46.8
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 1.1e-19 102.8 647 24.1
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 1.4e-19 102.4 218 37.2
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.8e-19 102.1 218 36.2
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 6.8e-19 100.1 161 43.5
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 1.5e-18 99.0 590 29.5
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 7.6e-18 96.7 125 51.2
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 9.9e-18 96.3 232 34.9
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 9.9e-18 96.3 254 33.5
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 1.3e-17 95.9 118 48.3
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 1.3e-17 95.9 125 51.2
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 2.9e-17 94.7 115 52.2
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 2.9e-17 94.7 115 52.2
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 6.4e-17 93.6 115 51.3
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 8.4e-17 93.2 239 36.0
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 1.9e-16 92.0 165 41.8
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 3.2e-16 91.3 720 24.0
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.2e-15 89.4 219 36.5
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 2.7e-15 88.2 220 34.5
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 6.0e-15 87.0 149 40.3
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.3e-14 85.9 128 46.9
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.3e-14 85.1 222 39.2
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 3.0e-14 84.7 179 37.4
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 3.0e-14 84.7 153 43.1
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 6.6e-14 83.6 160 40.6
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 8.7e-14 83.2 155 35.5
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 1.5e-13 82.4 218 35.3
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.5e-13 82.4 184 37.0
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.9e-13 82.0 153 43.1
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 3.3e-13 81.3 160 42.5
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 3.3e-13 81.3 214 32.7
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 3.3e-13 81.3 196 36.2
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 5.6e-13 80.5 130 43.1
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 5.6e-13 80.5 192 34.4
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 7.3e-13 80.1 140 40.7
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 7.3e-13 80.1 156 39.1
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 7.3e-13 80.1 214 34.1
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 7.3e-13 80.1 235 32.8
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 9.6e-13 79.7 209 33.5
CARHR119590 Cardamine hirsuta HOM05D004189 ORTHO05D004092 9.6e-13 79.7 160 38.8
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 1.2e-12 79.3 143 42.7
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 6.2e-12 77.0 150 38.7
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 8.1e-12 76.6 203 32.5
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 1.1e-11 76.3 157 39.5
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 1.4e-11 75.9 759 24.1
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 2.4e-11 75.1 204 33.8
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 2.4e-11 75.1 210 33.3
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 4.0e-11 74.3 296 29.4
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 5.2e-11 73.9 213 32.4
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 6.9e-11 73.6 159 37.1
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 6.9e-11 73.6 237 30.0
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 6.9e-11 73.6 281 32.0
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.6e-10 71.6 228 32.5
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 2.6e-10 71.6 288 28.1
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 5.8e-10 70.5 294 31.3
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 7.6e-10 70.1 241 29.0
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 7.6e-10 70.1 142 41.5
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.7e-09 68.9 201 32.3
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 2.2e-09 68.6 171 35.1
BolC1t02156H Brassica oleracea HOM05D004189 ORTHO05D031907 6.4e-09 67.0 83 48.2
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.1e-08 66.2 138 34.8
BcaC09g50698 Brassica carinata HOM05D004189 ORTHO05D031907 2.4e-08 65.1 83 47.0
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 4.2e-08 64.3 196 33.2
C01p22260 Brassica napus HOM05D004189 ORTHO05D031907 5.4e-08 63.9 81 48.1
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 7.1e-08 63.5 687 24.5
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 7.1e-08 63.5 101 38.6
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 9.3e-08 63.2 249 30.1
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 2.7e-07 61.6 78 50.0
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 2.7e-07 61.6 95 45.3
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 2.3e-06 58.5 216 31.0
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 3.9e-06 57.8 78 43.6
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 3.9e-06 57.8 297 27.3
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 6.6e-06 57.0 122 37.7


User provided reference genes

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