Gene: AT5G52310
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G52310
- Transcript Identifier AT5G52310.1
- Gene Type Coding gene
- Location Chr5 : 21240929-21243326 : positive
Gene Family Information
- ID HOM05D004189
- #Genes/#Species 169/80
- Phylogenetic origin
- ID ORTHO05D004092
- #Genes/#Species 192/84
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G52310.1
- symbol LTI78
- Alias COR78,COLD REGULATED 78,LTI140,RD29A,RESPONSIVE TO DESSICATION 29A
- full_name LOW-TEMPERATURE-INDUCED 78
- uniprot Q06738
Descriptions
- Description low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
- Computational description LOW-TEMPERATURE-INDUCED 78 (LTI78); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.2); Has 4951 Blast hits to 3145 proteins in 397 species: Archae - 10; Bacteria - 1464; Metazoa - 1621; Fungi - 447; Plants - 293; Viruses - 46; Other Eukaryotes - 1070 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000302 | IEP | Gene Ontology | response to reactive oxygen species | 1 |
| GO:0009737 | IEA | GOA Database | response to abscisic acid | |
| GO:0009737 | IEP | Gene Ontology | response to abscisic acid | 2 |
| GO:0009737 | IEA | InterPro | response to abscisic acid | |
| GO:0006950 | IBA | Gene Ontology | response to stress | 3 |
| GO:0010555 | IEP | Gene Ontology | response to mannitol | 4 |
| GO:0042538 | IEP | Gene Ontology | hyperosmotic salinity response | 5 |
| GO:0009609 | IEP | Gene Ontology | response to symbiotic bacterium | 6 |
| GO:0009611 | IEP | Gene Ontology | response to wounding | 7 |
| GO:1902074 | IEP | Gene Ontology | response to salt | 1 |
| GO:0010150 | IMP | Gene Ontology | leaf senescence | 8 |
| GO:2000280 | IDA | Gene Ontology | regulation of root development | 9 |
| GO:0007623 | IEP | Gene Ontology | circadian rhythm | 10 |
| GO:0009651 | IEP | Gene Ontology | response to salt stress | 2 |
| GO:0009414 | IEP | Gene Ontology | response to water deprivation | 2 |
| GO:0009409 | IEP | Gene Ontology | response to cold | 2 |
| GO:0006970 | IGI | Gene Ontology | response to osmotic stress | 11 |
| GO:0009269 | IMP | Gene Ontology | response to desiccation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003674 | ND | Gene Ontology | molecular_function |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IDA | Gene Ontology | cytoplasm | 12 |
| GO:0009536 | HDA | Gene Ontology | plastid | 13 |
| GO:0005829 | HDA | Gene Ontology | cytosol | 14 |
| GO:0005634 | ISM | Gene Ontology | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR037491 | Low-temperature-induced 78kDa/65kDa |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |