Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 0.0e+00 3111.6 1615 100.0
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 0.0e+00 2079.3 1632 69.7
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 0.0e+00 2062.3 1640 69.1
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 0.0e+00 2059.3 1631 70.1
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 0.0e+00 2048.5 1631 68.4
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 0.0e+00 2043.5 1677 68.2
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 0.0e+00 2025.0 1626 69.5
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 0.0e+00 1994.2 1632 68.4
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 0.0e+00 1879.8 1635 65.2
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 0.0e+00 1878.2 1636 65.1
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 0.0e+00 1873.6 1635 65.0
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 0.0e+00 1859.3 1638 64.7
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 0.0e+00 1852.8 1699 62.8
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 0.0e+00 1842.0 1705 62.3
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 0.0e+00 1590.1 1649 56.7
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 1.6e-292 1010.4 1658 40.2
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 2.7e-292 1009.6 1658 40.7
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 1.2e-279 967.6 1686 40.9
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 1.8e-275 953.7 1658 40.2
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 2.2e-270 936.8 1487 41.3
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 4.4e-258 896.0 1668 38.7
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 1.7e-249 867.5 1772 36.6
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 2.6e-242 843.6 1681 36.5
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 1.7e-241 840.9 1754 36.3
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 6.5e-238 828.9 1669 36.8
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 2.2e-233 813.9 1738 36.5
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 5.4e-232 809.3 1420 39.5
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 4.2e-229 799.7 1669 35.8
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 2.4e-224 783.9 1604 36.3
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 1.9e-221 774.2 1673 35.4
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 6.8e-219 765.8 1723 35.4
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 7.5e-218 762.3 1669 34.9
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 7.0e-216 755.7 1653 34.8
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 9.2e-216 755.4 1695 34.6
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 1.8e-211 741.1 1676 34.6
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 3.4e-210 736.9 1648 34.6
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 1.3e-209 734.9 1659 34.4
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 1.9e-208 731.1 1697 34.1
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 6.6e-206 722.6 1695 34.3
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 2.3e-203 714.1 1690 33.8
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 1.5e-202 711.4 1593 34.8
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 2.7e-199 700.7 1671 33.7
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 8.1e-196 689.1 1735 32.3
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 5.8e-194 682.9 1669 33.7
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 3.9e-190 670.2 1515 35.2
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 5.1e-190 669.8 1660 33.0
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 9.6e-189 665.6 1698 32.9
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 1.2e-188 665.2 1645 33.6
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 1.3e-185 655.2 1642 33.7
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 1.7e-185 654.8 1670 32.3
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 6.0e-183 646.4 1492 33.5
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 6.6e-182 642.9 1508 34.2
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 3.1e-179 634.0 1598 31.9
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 5.3e-179 633.3 1770 31.8
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 3.4e-178 630.6 1679 31.7
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 2.4e-176 624.4 1178 38.5
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 1.0e-174 619.0 1753 30.6
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 6.7e-174 616.3 1186 38.2
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 2.5e-173 614.4 1690 33.3
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 5.6e-173 613.2 1641 32.3
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 2.1e-172 611.3 1708 32.1
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 1.6e-167 595.1 1683 30.9
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.0e-166 592.4 1659 31.2
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 1.1e-165 589.0 1676 30.7
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.5e-165 588.6 1660 31.2
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 4.3e-165 587.0 1665 31.2
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 6.2e-164 583.2 1650 32.1
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.6e-162 577.8 1680 30.9
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 2.2e-156 558.1 1647 31.4
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.2e-152 544.3 1734 29.5
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 6.7e-150 536.6 789 45.1
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 9.4e-144 516.2 1671 29.1
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 7.2e-136 490.0 1107 34.0
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 7.4e-133 479.9 756 43.8
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 8.2e-132 476.5 822 40.5
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 5.9e-130 470.3 1648 28.7
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 5.7e-125 453.8 1684 28.3
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 9.7e-125 453.0 1688 28.4
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 7.0e-123 446.8 1667 28.7
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 1.2e-119 436.0 1655 28.5
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.6e-119 435.6 1238 31.6
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 1.5e-117 429.1 1628 28.3
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 7.0e-115 420.2 1652 27.1
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 1.9e-112 412.1 688 37.5
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 1.9e-112 412.1 1467 29.4
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 1.8e-110 405.6 1523 28.4
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 1.3e-108 399.4 1823 26.4
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 3.1e-107 394.8 896 32.6
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 4.1e-107 394.4 1595 28.0
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 5.6e-104 384.0 1835 26.6
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 9.5e-104 383.3 710 40.0
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 1.2e-103 382.9 1663 26.8
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 4.0e-102 377.9 1022 32.4
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 2.4e-99 368.6 681 40.1
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 2.7e-98 365.2 698 39.0
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 1.3e-97 362.8 675 38.7
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 5.8e-93 347.4 1467 27.3
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 6.2e-87 327.4 821 34.6
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 6.6e-81 307.4 632 35.4
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 7.6e-77 293.9 802 31.8
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 6.0e-74 284.3 741 32.9
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.6e-63 248.4 517 36.8
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 1.4e-43 183.3 604 31.1
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 1.3e-41 176.8 516 32.6
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 4.3e-40 171.8 600 29.8
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 3.8e-36 158.7 230 39.1
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 1.4e-35 156.8 161 55.3
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 4.2e-35 155.2 679 25.3
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 2.1e-34 152.9 464 28.2
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 3.6e-26 125.6 225 34.2
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 7.0e-22 111.3 138 43.5
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 2.0e-21 109.8 291 31.6
Hund11747 Selenicereus undatus HOM05D005579 ORTHO05D006775 2.9e-20 105.9 212 33.0
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 1.5e-19 103.6 225 30.2
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 1.9e-19 103.2 586 23.2
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 5.2e-17 95.1 305 29.5
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 2.4e-14 86.3 210 32.4
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 5.0e-12 78.6 210 30.0
Haze_13709 Corylus avellana HOM05D005579 ORTHO05D006775 8.0e-10 71.2 164 36.0
TPR.G31959 Trifolium pratense HOM05D061576 ORTHO05D006775 2.6e-08 66.2 134 32.1
SalBow1G5008 Salvia bowleyana HOM05D045082 ORTHO05D006775 4.4e-08 65.5 85 43.5
SalBow1G5207 Salvia bowleyana HOM05D045082 ORTHO05D006775 4.4e-08 65.5 85 43.5
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 8.3e-07 61.2 84 44.0
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 8.3e-07 61.2 84 44.0
FAN06G4979 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.1e-06 60.8 82 41.5
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.1e-06 60.8 97 40.2
PSO339G5948 Papaver somniferum HOM05D007489 ORTHO05D008037 1.1e-06 60.8 182 33.0


User provided reference genes

Program Settings