Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G13440 Aethionema arabicum HOM05D000306 ORTHO05D005993 0.0e+00 1807.7 891 100.0
AT5G57590 Arabidopsis thaliana HOM05D000306 ORTHO05D005993 0.0e+00 1452.6 891 81.1
AL8G33620 Arabidopsis lyrata HOM05D000306 ORTHO05D005993 0.0e+00 1444.1 893 80.5
BcaB08g36111 Brassica carinata HOM05D000306 ORTHO05D005993 0.0e+00 1441.0 894 80.2
Thhalv10012677m.g Eutrema salsugineum HOM05D000306 ORTHO05D005993 0.0e+00 1440.2 893 80.4
BraA10t43578Z Brassica rapa HOM05D000306 ORTHO05D005993 0.0e+00 1421.0 896 79.9
Carub.0008s1810 Capsella rubella HOM05D000306 ORTHO05D005993 0.0e+00 1418.7 892 79.8
A10p15010 Brassica napus HOM05D000306 ORTHO05D005993 0.0e+00 1413.7 896 79.7
BcaC04g19951 Brassica carinata HOM05D000306 ORTHO05D005993 0.0e+00 1412.9 896 79.7
BolC3t13934H Brassica oleracea HOM05D000306 ORTHO05D005993 0.0e+00 1399.8 897 78.9
BolC9t57799H Brassica oleracea HOM05D000306 ORTHO05D005993 0.0e+00 1396.7 896 79.0
BcaC01g06481 Brassica carinata HOM05D000306 ORTHO05D005993 0.0e+00 1393.6 915 77.6
C03p14920 Brassica napus HOM05D000306 ORTHO05D005993 0.0e+00 1387.9 917 77.2
A03p12730 Brassica napus HOM05D000306 ORTHO05D005993 0.0e+00 1382.5 922 76.1
BraA03t10584Z Brassica rapa HOM05D000306 ORTHO05D005993 0.0e+00 1359.7 860 79.0
C09p49460 Brassica napus HOM05D000306 ORTHO05D005993 0.0e+00 1308.9 840 78.9
Sp6g19290 Schrenkiella parvula HOM05D000306 ORTHO05D005993 0.0e+00 1240.3 892 72.3
Cpa.g.sc95.64 Carica papaya HOM05D000306 ORTHO05D005993 0.0e+00 1184.1 889 67.9
Potri.006G170400 Populus trichocarpa HOM05D000306 ORTHO05D005993 0.0e+00 1180.2 886 67.5
QL02p097337 Quercus lobata HOM05D000306 ORTHO05D005993 0.0e+00 1160.2 891 66.7
Manes.06G023800 Manihot esculenta HOM05D000306 ORTHO05D005993 0.0e+00 1152.9 901 64.5
CiPaw.07G190100 Carya illinoinensis HOM05D000306 ORTHO05D005993 0.0e+00 1151.7 894 66.3
Ciclev10007423m.g Citrus clementina HOM05D000306 ORTHO05D005993 0.0e+00 1151.7 899 65.7
Thecc.09G168600 Theobroma cacao HOM05D000306 ORTHO05D005993 0.0e+00 1144.0 889 65.9
Gorai.013G246300 Gossypium raimondii HOM05D000306 ORTHO05D005993 0.0e+00 1142.5 869 67.0
GSVIVG01029151001 Vitis vinifera HOM05D000306 ORTHO05D005993 0.0e+00 1138.3 865 65.8
Gohir.A13G211900 Gossypium hirsutum HOM05D000306 ORTHO05D005993 0.0e+00 1132.9 868 66.2
Duzib150G0339 Durio zibethinus HOM05D000306 ORTHO05D005993 0.0e+00 1130.9 883 65.7
TAR625G0692 Trochodendron aralioides HOM05D000306 ORTHO05D005993 0.0e+00 1129.0 889 64.9
Cfa013519 Carpinus fangiana HOM05D000306 ORTHO05D005993 0.0e+00 1114.0 882 64.2
Dinv41268 Davidia involucrata HOM05D000306 ORTHO05D005993 0.0e+00 1107.4 916 62.2
TWI34G1047 Tripterygium wilfordii HOM05D000306 ORTHO05D005993 0.0e+00 1104.7 881 62.7
Sabra06G0131200 Salix brachista HOM05D000306 ORTHO05D005993 0.0e+00 1102.4 894 64.2
Prupe.1G089300 Prunus persica HOM05D000306 ORTHO05D005993 0.0e+00 1099.0 899 63.3
RcHm_v2.0_Chr4g0403051 Rosa chinensis HOM05D000306 ORTHO05D005993 0.0e+00 1098.6 905 63.2
Glyma.13G094700 Glycine max HOM05D000306 ORTHO05D005993 0.0e+00 1095.5 877 63.4
Rhsim01G0006800 Rhododendron simsii HOM05D000306 ORTHO05D005993 0.0e+00 1094.7 932 61.2
PGR142G2544 Punica granatum HOM05D000306 ORTHO05D005993 0.0e+00 1091.3 910 60.9
MD13G1267300 Malus domestica HOM05D000306 ORTHO05D005993 0.0e+00 1090.9 894 62.9
MELO3C017490.2 Cucumis melo HOM05D000306 ORTHO05D005993 0.0e+00 1088.6 887 62.6
FvH4_4g09130 Fragaria vesca HOM05D000306 ORTHO05D005993 0.0e+00 1088.6 895 62.8
FAN17G3079 Fragaria x ananassa HOM05D000306 ORTHO05D005993 0.0e+00 1087.4 878 63.7
FAN22G2400 Fragaria x ananassa HOM05D000306 ORTHO05D005993 0.0e+00 1085.9 897 62.4
Lalb_Chr07g0180301 Lupinus albus HOM05D000306 ORTHO05D005993 0.0e+00 1085.1 880 62.7
VMungo1215G0493 Vigna mungo HOM05D000306 ORTHO05D005993 0.0e+00 1085.1 875 62.7
Lj4g0011507 Lotus japonicus HOM05D000306 ORTHO05D005993 0.0e+00 1083.6 876 63.2
arahy.Tifrunner.gnm1.ann1.MG2J04 Arachis hypogaea HOM05D000306 ORTHO05D005993 0.0e+00 1081.6 893 62.3
CANSAT11G2131 Cannabis sativa HOM05D000306 ORTHO05D005993 0.0e+00 1081.2 905 61.4
Phvul.003G147900 Phaseolus vulgaris HOM05D000306 ORTHO05D005993 0.0e+00 1081.2 873 62.4
Medtr4g128620 Medicago truncatula HOM05D000306 ORTHO05D005993 0.0e+00 1079.7 879 62.6
Ca_21207_v3 Cicer arietinum L. HOM05D000306 ORTHO05D005993 0.0e+00 1079.3 870 63.4
CsaV3_1G031330 Cucumis sativus L. HOM05D000306 ORTHO05D005993 0.0e+00 1078.9 885 61.9
Psat4g011120 Pisum sativum HOM05D000306 ORTHO05D005993 0.0e+00 1075.8 864 63.0
ClCG06G013170 Citrullus lanatus HOM05D000306 ORTHO05D005993 0.0e+00 1075.5 907 61.5
Actinidia04131 Actinidia chinensis HOM05D000306 ORTHO05D005993 2.1e-310 1068.9 909 60.7
PSO063G2401 Papaver somniferum HOM05D000306 ORTHO05D005993 4.6e-310 1067.8 892 61.5
PSO782G0277 Papaver somniferum HOM05D000306 ORTHO05D005993 4.6e-310 1067.8 889 61.1
Sed0027913 Sechium edule HOM05D000306 ORTHO05D005993 4.3e-308 1061.2 881 62.1
Sc14g0001190 Simmondsia chinensis HOM05D000306 ORTHO05D005993 2.8e-307 1058.5 908 60.0
Nn8g40500 Nelumbo nucifera HOM05D000306 ORTHO05D005993 6.4e-304 1047.3 885 60.1
Aqoxy7G03117 Aquilegia oxysepala HOM05D000306 ORTHO05D005993 2.5e-303 1045.4 909 58.4
Solyc07g006810.3 Solanum lycopersicum HOM05D000306 ORTHO05D005993 5.5e-303 1044.3 895 60.2
Sopen07g002910 Solanum pennellii HOM05D000306 ORTHO05D005993 6.0e-302 1040.8 895 60.1
Migut.J01457 Erythranthe guttata HOM05D000306 ORTHO05D005993 3.9e-301 1038.1 893 59.5
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 5.6e-300 1034.2 855 60.8
MSTRG.19696 Avicennia marina HOM05D000306 ORTHO05D005993 4.8e-299 1031.2 915 58.1
HanXRQChr03g0068921 Helianthus annuus HOM05D000306 ORTHO05D005993 3.1e-298 1028.5 863 60.6
Lj9A687T82 Lonicera japonica HOM05D000306 ORTHO05D005993 6.5e-296 1020.8 835 62.0
arahy.Tifrunner.gnm1.ann1.6YA4AW Arachis hypogaea HOM05D000306 ORTHO05D005993 6.0e-294 1014.2 905 58.2
Atru.chr7.720 Acer truncatum HOM05D000306 ORTHO05D005993 1.3e-293 1013.1 723 69.3
CAN.G584.9 Capsicum annuum HOM05D000306 ORTHO05D005993 1.4e-290 1003.0 966 55.2
DCAR_009913 Daucus carota HOM05D000306 ORTHO05D005993 5.3e-290 1001.1 902 58.0
ATR0580G146 Amborella trichopoda HOM05D000306 ORTHO05D005993 7.7e-289 997.3 885 58.0
Nitab4.5_0000244g0320 Nicotiana tabacum HOM05D000306 ORTHO05D005993 2.2e-288 995.7 910 57.5
TPR.G5323 Trifolium pratense HOM05D000306 ORTHO05D005993 1.4e-287 993.0 734 65.9
MBI14_g17347_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D005993 1.6e-286 989.6 897 58.0
Hma1.2p1_1022F.1_g248760 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 2.7e-286 988.8 763 65.8
SHI02942 Sapria himalayana HOM05D000306 ORTHO05D005993 2.2e-283 979.2 871 58.3
unitig_749.g14164 Utricularia gibba HOM05D000306 ORTHO05D005993 5.3e-282 974.5 921 55.9
SGA_v2.0_scaffold69G23277 Striga asiatica HOM05D000306 ORTHO05D005993 7.9e-278 960.7 929 54.0
CDE02G3177 Ceratophyllum demersum HOM05D000306 ORTHO05D005993 2.6e-276 955.7 829 58.0
Lsat_1_v5_gn_7_54301 Lactuca sativa HOM05D000306 ORTHO05D005993 1.7e-275 953.0 772 62.2
Hund09018 Selenicereus undatus HOM05D000306 ORTHO05D005993 6.3e-275 951.0 887 56.5
AUR62040000 Chenopodium quinoa HOM05D000306 ORTHO05D005993 1.3e-272 943.3 871 55.3
AUR62040306 Chenopodium quinoa HOM05D000306 ORTHO05D005993 1.5e-268 929.9 853 55.3
Os08g0245400 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D005993 5.7e-268 927.9 859 56.7
Zm00001eb412500 Zea mays HOM05D000306 ORTHO05D005993 6.5e-264 914.4 882 55.1
vmacro13109 Vaccinium macrocarpon HOM05D000306 ORTHO05D005993 5.2e-261 904.8 921 55.7
HPP92_013429 Vanilla planifolia HOM05D000306 ORTHO05D005993 1.9e-247 859.8 787 56.8
Peaxi162Scf00050g00628 Petunia axillaris HOM05D000306 ORTHO05D005993 6.1e-246 854.7 813 54.9
Pp3c17_24020 Physcomitrium patens HOM05D000306 ORTHO05D005993 6.8e-245 851.3 907 48.7
Mapoly0061s0099 Marchantia polymorpha HOM05D000306 ORTHO05D005993 1.1e-242 844.0 898 49.4
C05p43000 Brassica napus HOM05D000306 ORTHO05D005993 9.2e-242 840.9 539 78.1
BcaC05g28220 Brassica carinata HOM05D000306 ORTHO05D005993 1.5e-239 833.6 539 76.6
C01p37640 Brassica napus HOM05D000306 ORTHO05D005993 4.7e-238 828.6 539 76.6
BolC1t03728H Brassica oleracea HOM05D000306 ORTHO05D005993 6.1e-238 828.2 555 75.3
SMO146G0375 Selaginella moellendorffii HOM05D000306 ORTHO05D005993 2.3e-237 826.2 861 50.6
BcaC08g43477 Brassica carinata HOM05D000306 ORTHO05D005993 3.4e-236 822.4 539 76.4
C06p08630 Brassica napus HOM05D000306 ORTHO05D005993 3.4e-236 822.4 539 76.4
Gohir.D13G216000 Gossypium hirsutum HOM05D000306 ORTHO05D005993 7.8e-225 784.6 585 67.0
Eucgr.C00186 Eucalyptus grandis HOM05D000306 ORTHO05D005993 5.2e-221 771.9 605 63.0
Haze_22119 Corylus avellana HOM05D000306 ORTHO05D005993 3.0e-216 756.1 621 63.0
Cc06_g13480 Coffea canephora HOM05D000306 ORTHO05D005993 7.3e-207 724.9 645 57.1
C09p62180 Brassica napus HOM05D000306 ORTHO05D005993 9.6e-207 724.5 539 69.6
Ah.09g229770 Amaranthus hybridus HOM05D000306 ORTHO05D005993 3.2e-202 709.5 885 45.4
CBR_g30689 Chara braunii HOM05D000306 ORTHO05D005993 6.6e-200 701.8 928 41.9
CARHR271360 Cardamine hirsuta HOM05D000306 ORTHO05D005993 3.3e-191 672.9 411 81.0
Hma1.2p1_1423F.1_g282650 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 9.3e-178 628.2 529 62.6
EL10Ac8g18271 Beta vulgaris HOM05D000306 ORTHO05D005993 4.1e-173 612.8 634 51.9
Hma1.2p1_1022F.1_g248750 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 1.4e-170 604.4 497 63.8
MCO16G292 Micromonas commoda HOM05D000306 ORTHO05D005993 1.4e-168 597.8 927 40.1
Nitab4.5_0000937g0040 Nicotiana tabacum HOM05D000306 ORTHO05D005993 4.5e-164 582.8 509 59.9
SalBow6G4076 Salvia bowleyana HOM05D000306 ORTHO05D005993 6.7e-152 542.3 437 62.9
SEGI_35821 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 1.7e-139 501.1 482 53.3
BraA02t08063Z Brassica rapa HOM05D000306 ORTHO05D005993 8.8e-136 488.8 350 70.6
Cre06.g277200 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D005993 2.6e-127 460.7 1019 34.0
BcaB01g04449 Brassica carinata HOM05D000306 ORTHO05D005993 2.7e-124 450.7 377 63.7
Cfa024735 Carpinus fangiana HOM05D000306 ORTHO05D005993 8.1e-113 412.5 928 31.6
Haze_22118 Corylus avellana HOM05D000306 ORTHO05D005993 6.4e-94 349.7 252 68.3
Cc06_g13470 Coffea canephora HOM05D000306 ORTHO05D005993 2.3e-91 341.3 227 69.2
Hma1.2p1_0863F.1_g230000 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 1.3e-75 288.9 299 53.5
CSS0003956 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 1.6e-68 265.4 182 68.7
Cfa016931 Carpinus fangiana HOM05D000306 ORTHO05D005993 2.5e-58 231.5 228 57.0
Hma1.2p1_1423F.1_g282660 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 2.2e-57 228.4 250 51.6
BcaC03g16218 Brassica carinata HOM05D000306 ORTHO05D005993 1.3e-54 219.2 118 86.4
BcaC05g25358 Brassica carinata HOM05D000306 ORTHO05D005993 1.7e-41 175.6 99 80.8
QL02p097286 Quercus lobata HOM05D000306 ORTHO05D005993 8.2e-41 173.3 190 51.6
BolC5t33030H Brassica oleracea HOM05D000306 ORTHO05D005993 3.2e-37 161.4 96 80.2
SEGI_37083 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 1.6e-36 159.1 118 64.4
CSS0007035 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 4.7e-36 157.5 261 42.1
CSS0029448 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 1.8e-35 155.6 91 79.1
SEGI_33461 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 7.0e-32 143.7 78 83.3
BolC2t10024H Brassica oleracea HOM05D000306 ORTHO05D005993 7.7e-31 140.2 78 83.3
MELO3C034648.2 Cucumis melo HOM05D000306 ORTHO05D005993 1.2e-28 132.9 92 68.5
MELO3C020066.2 Cucumis melo HOM05D000306 ORTHO05D005993 1.2e-26 126.3 97 63.9
MELO3C033059.2 Cucumis melo HOM05D000306 ORTHO05D005993 2.0e-26 125.6 97 62.9
MELO3C032402.2 Cucumis melo HOM05D000306 ORTHO05D005993 2.2e-25 122.1 84 69.0
Peaxi162Scf00610g00360 Petunia axillaris HOM05D000306 ORTHO05D005993 2.2e-25 122.1 79 75.9
CSS0049760 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 2.8e-25 121.7 97 63.9
MELO3C033088.2 Cucumis melo HOM05D000306 ORTHO05D005993 1.1e-24 119.8 97 59.8
MELO3C031202.2 Cucumis melo HOM05D000306 ORTHO05D005993 1.7e-22 112.5 89 61.8
arahy.Tifrunner.gnm1.ann1.F592RX Arachis hypogaea HOM05D000306 ORTHO05D007065 3.6e-20 104.8 94 59.6
arahy.Tifrunner.gnm1.ann1.JGW43E Arachis hypogaea HOM05D000306 ORTHO05D005993 8.8e-19 100.1 93 58.1
CSS0002850 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 2.0e-18 99.0 57 78.9
CSS0028890 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 2.0e-18 99.0 57 78.9
arahy.Tifrunner.gnm1.ann1.HK2K9G Arachis hypogaea HOM05D006158 ORTHO05D007065 9.2e-16 90.1 58 74.1
arahy.Tifrunner.gnm1.ann1.S0LUWR Arachis hypogaea HOM05D000306 ORTHO05D007065 3.5e-15 88.2 53 75.5
Oeu009845.1 Olea europaea HOM05D000306 ORTHO05D005993 1.3e-14 86.3 62 69.4
AL2G40850 Arabidopsis lyrata HOM05D000826 ORTHO05D004603 3.0e-11 75.1 225 26.2
Carub.0002s2695 Capsella rubella HOM05D000826 ORTHO05D004603 6.8e-11 73.9 225 26.2
AT1G80600 Arabidopsis thaliana HOM05D000826 ORTHO05D004603 8.9e-11 73.6 225 26.2
Rhsim12G0188700 Rhododendron simsii HOM05D000826 ORTHO05D004603 1.2e-10 73.2 231 26.0
Aqoxy1G02396 Aquilegia oxysepala HOM05D000826 ORTHO05D004603 1.5e-10 72.8 225 27.6
CSS0028993 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 5.7e-10 70.9 42 78.6
Solyc08g014610.4 Solanum lycopersicum HOM05D003092 ORTHO05D003977 5.7e-10 70.9 123 33.3
Pp3c16_23960 Physcomitrium patens HOM05D000826 ORTHO05D004603 7.5e-10 70.5 181 27.6
Sopen08g005600 Solanum pennellii HOM05D003092 ORTHO05D003977 7.5e-10 70.5 123 32.5
PGSC0003DMG400024281 Solanum tuberosum HOM05D003092 ORTHO05D003977 7.5e-10 70.5 125 32.0
PGSC0003DMG400025228 Solanum tuberosum HOM05D003092 ORTHO05D003977 1.7e-09 69.3 123 32.5
Solyc12g006470.2 Solanum lycopersicum HOM05D003092 ORTHO05D003977 8.3e-09 67.0 125 31.2
Sopen12g002410 Solanum pennellii HOM05D003092 ORTHO05D003977 8.3e-09 67.0 125 31.2
CAN.G339.12 Capsicum annuum HOM05D003092 ORTHO05D003977 1.8e-08 65.9 96 35.4
Phvul.006G002000 Phaseolus vulgaris HOM05D000826 ORTHO05D004603 2.4e-08 65.5 169 26.0
PRCOL_00002709 Prasinoderma coloniale HOM05D000826 ORTHO05D006448 4.1e-08 64.7 193 23.8
BcaC09g49157 Brassica carinata HOM05D003092 ORTHO05D003977 5.4e-08 64.3 125 29.6
A01p32960 Brassica napus HOM05D003092 ORTHO05D003977 5.4e-08 64.3 125 29.6
C01p42030 Brassica napus HOM05D003092 ORTHO05D003977 5.4e-08 64.3 125 29.6
BolC1t04162H Brassica oleracea HOM05D003092 ORTHO05D003977 7.0e-08 63.9 125 29.6
HanXRQChr14g0446441 Helianthus annuus HOM05D003092 ORTHO05D003977 9.2e-08 63.5 127 29.9
BcaB04g20537 Brassica carinata HOM05D003092 ORTHO05D003977 1.6e-07 62.8 125 28.8
Pp3c1_32910 Physcomitrium patens HOM05D003092 ORTHO05D003977 2.0e-07 62.4 170 27.1
PRCOL_00000335 Prasinoderma coloniale HOM05D003092 ORTHO05D003977 2.7e-07 62.0 133 25.6
arahy.Tifrunner.gnm1.ann1.46R2K9 Arachis hypogaea HOM05D000306 ORTHO05D083075 3.5e-07 61.6 44 61.4
SMO119G0079 Selaginella moellendorffii HOM05D000826 ORTHO05D006448 1.0e-06 60.1 207 25.6
EL10Ac8g19645 Beta vulgaris HOM05D000826 ORTHO05D006448 1.3e-06 59.7 225 23.1
Mapoly0003s0017 Marchantia polymorpha HOM05D000826 ORTHO05D006448 1.7e-06 59.3 209 24.9
Ah.09g232510 Amaranthus hybridus HOM05D000826 ORTHO05D006448 2.3e-06 58.9 225 24.0
arahy.Tifrunner.gnm1.ann1.EEM62Q Arachis hypogaea HOM05D002203 ORTHO05D007065 2.3e-06 58.9 38 71.1
Haze_26696 Corylus avellana HOM05D000826 ORTHO05D006448 2.3e-06 58.9 144 27.8
arahy.Tifrunner.gnm1.ann1.RYD0NS Arachis hypogaea HOM05D000129 ORTHO05D017460 5.0e-06 57.8 89 38.2
SEGI_29053 Sequoiadendron giganteum HOM05D000826 ORTHO05D006448 5.0e-06 57.8 186 24.7


User provided reference genes

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