Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 3364.7 1877 100.0
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 2487.6 1865 73.9
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 2479.1 1845 75.3
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 2466.4 1889 74.4
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 2449.9 1849 74.3
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 2411.3 1919 73.2
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 2392.5 1844 72.0
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2389.8 1889 71.0
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 2386.3 1893 70.9
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2361.6 1899 70.7
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 2358.6 1877 71.0
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 2357.0 1797 73.3
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2349.7 1806 72.6
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 2343.5 1846 72.2
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2338.9 1846 72.0
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 2338.9 1846 72.0
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2284.2 1852 68.8
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2275.0 1921 67.8
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 1997.2 1943 59.8
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 1991.5 1941 59.7
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 1961.8 1821 59.8
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1952.2 1860 59.9
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1950.6 1822 60.0
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1946.4 1912 59.4
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1944.1 1856 59.4
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 1942.2 1936 58.9
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1932.5 1975 57.5
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1925.2 1853 59.6
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1921.7 1936 57.1
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1919.1 1932 59.0
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1917.9 1932 58.8
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1916.7 1917 58.8
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1916.0 1897 59.8
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1914.8 1901 59.7
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1914.4 1830 58.5
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1913.3 1901 59.6
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1912.9 1863 58.8
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1903.3 1946 58.9
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 1898.2 1975 56.6
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1897.5 1861 59.9
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 1895.9 2003 56.1
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1895.2 1892 57.6
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1889.4 1874 57.4
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1880.5 1952 57.0
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1874.8 1899 59.1
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 1871.3 1944 56.2
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1870.9 1903 58.3
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 1870.5 1866 56.5
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1869.4 1904 58.6
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1868.6 1920 58.3
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1867.8 1944 56.5
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1867.8 1852 57.6
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1862.4 1850 57.5
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1861.3 1832 56.3
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1860.1 1852 58.4
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1855.9 1937 57.6
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1853.6 1446 72.5
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1850.1 1845 58.6
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1849.7 1811 57.8
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 1842.4 2005 55.1
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1841.6 1913 57.0
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1835.8 1972 55.2
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1833.5 1797 57.6
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1831.2 2038 53.9
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1830.8 1855 56.9
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1827.8 1945 57.1
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1818.9 1904 57.4
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1818.9 1935 57.1
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1817.0 1880 55.0
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1815.4 1857 56.5
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1801.6 1849 56.8
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1793.5 1827 55.2
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1791.9 1892 57.4
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1790.4 1775 56.3
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1790.0 1383 75.1
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 1785.8 1979 54.6
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1783.5 1789 56.6
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1780.0 1938 54.8
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1775.8 1960 55.6
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1775.8 1880 56.3
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1772.7 1856 54.2
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1760.3 1926 53.8
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1757.3 1943 55.3
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1750.7 1840 56.0
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1749.9 1869 53.7
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1749.6 1937 55.2
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1749.2 1847 55.7
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1748.4 1807 55.3
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 1744.6 1981 53.5
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1742.6 1873 56.7
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1739.5 1976 53.2
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1728.0 1841 54.5
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1726.8 1967 53.9
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1712.6 1777 54.6
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1698.7 1887 52.6
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1691.4 1966 53.3
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1665.2 1820 53.1
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1641.7 1842 51.5
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1636.3 1857 51.0
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1609.0 1889 50.5
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1597.4 1816 51.4
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1566.6 1895 49.3
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1563.1 1870 49.7
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1557.3 1704 52.4
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1544.6 1699 52.4
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1544.3 2034 48.7
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1453.7 1895 46.4
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1410.6 1847 46.2
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1387.5 1858 45.0
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1347.4 1259 59.4
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1329.3 1966 43.0
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1306.2 1893 43.8
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1306.2 1893 43.8
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1299.6 1883 43.5
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1236.5 1859 43.9
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1214.1 1821 42.3
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1177.2 1233 57.5
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1122.8 1799 40.7
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1120.5 1542 47.2
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1101.7 1212 55.4
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 2.5e-305 1053.1 1116 57.3
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 5.0e-266 922.5 1365 46.1
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.2e-264 917.9 1067 53.0
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 4.7e-256 889.4 922 54.0
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 2.3e-255 887.1 1611 39.6
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 4.3e-241 839.7 873 55.8
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 4.9e-237 826.2 1437 41.9
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 8.4e-237 825.5 1750 34.6
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 3.2e-236 823.5 862 57.2
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 7.9e-211 739.2 872 51.4
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.0e-210 738.8 786 53.9
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.9e-173 614.4 604 58.9
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 8.6e-165 586.3 692 49.7
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 2.3e-162 578.2 675 48.1
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 2.0e-161 575.1 750 46.8
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 8.3e-152 543.1 497 57.7
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.2e-142 512.7 640 48.8
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.1e-139 501.9 338 68.6
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 2.2e-136 491.9 440 62.5
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.3e-132 477.6 550 54.4
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.2e-123 447.2 551 52.1
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 7.4e-108 397.1 1204 28.6
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 1.1e-100 373.2 355 56.6
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 3.3e-84 318.5 439 44.9
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.7e-83 315.1 591 36.7
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.2e-78 300.1 2066 23.4
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.5e-71 276.6 462 39.2
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 5.5e-63 248.1 161 75.8
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.6e-57 229.9 837 28.2
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 1.4e-50 206.8 256 47.7
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 6.1e-46 191.4 419 33.9
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.9e-42 179.9 322 41.3
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 6.0e-41 174.9 132 71.2
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 7.5e-36 157.9 183 54.6
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 2.2e-35 156.4 157 75.8
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.2e-20 107.5 192 40.1
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 1.2e-12 80.9 109 45.0
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 2.0e-12 80.1 81 54.3
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 8.4e-11 74.7 51 60.8
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 9.3e-10 71.2 33 87.9
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 2.1e-09 70.1 96 42.7
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 5.6e-07 62.0 134 59.7
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.6e-06 60.5 53 58.5
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 3.6e-06 59.3 60 53.3
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 6.2e-06 58.5 76 48.7


User provided reference genes

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