Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 2.3e-70 268.9 144 100.0
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.8e-55 218.8 139 82.7
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.2e-52 209.1 138 79.0
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 2.2e-52 209.1 138 79.7
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 8.3e-52 207.2 139 79.1
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 8.3e-52 207.2 140 78.6
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 8.3e-52 207.2 137 80.3
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 7.0e-51 204.1 139 77.7
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 2.7e-50 202.2 144 76.4
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 7.8e-50 200.7 145 75.2
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 7.8e-50 200.7 143 73.4
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 1.4e-46 189.9 140 70.0
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 2.3e-46 189.1 139 71.9
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 3.1e-46 188.7 138 72.5
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 3.1e-46 188.7 138 72.5
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 2.6e-45 185.7 141 70.2
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 2.6e-45 185.7 141 70.2
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 4.9e-44 181.4 138 69.6
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 8.3e-44 180.6 138 68.8
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-43 180.3 137 69.3
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 2.8e-39 165.6 138 65.9
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 2.8e-39 165.6 138 65.9
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 2.8e-39 165.6 138 65.9
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 4.7e-39 164.9 141 66.0
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 1.7e-36 156.4 139 63.3
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 2.9e-36 155.6 143 62.9
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 4.9e-36 154.8 142 64.1
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 8.3e-36 154.1 138 63.8
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 8.3e-36 154.1 138 63.8
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 1.1e-35 153.7 136 59.6
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 1.9e-35 152.9 130 59.2
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 5.4e-35 151.4 129 60.5
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 9.2e-35 150.6 147 56.5
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.6e-34 149.8 120 65.8
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 2.7e-34 149.1 137 59.9
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 3.5e-34 148.7 142 57.7
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 3.5e-34 148.7 145 59.3
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 4.6e-34 148.3 144 59.0
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 6.0e-34 147.9 130 60.8
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 6.0e-34 147.9 147 55.8
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 7.8e-34 147.5 148 56.8
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 1.0e-33 147.1 137 59.9
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.0e-33 147.1 162 53.1
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.3e-33 146.7 139 60.4
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 3.0e-33 145.6 136 58.1
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 3.0e-33 145.6 120 62.5
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 6.6e-33 144.4 133 57.9
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 6.6e-33 144.4 144 56.9
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 8.6e-33 144.1 130 60.8
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.1e-32 143.7 149 55.0
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 1.1e-32 143.7 131 58.0
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 1.1e-32 143.7 131 58.0
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 1.5e-32 143.3 123 58.5
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 1.9e-32 142.9 137 58.4
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 2.5e-32 142.5 145 56.6
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 3.3e-32 142.1 142 54.2
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 3.3e-32 142.1 124 60.5
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 4.3e-32 141.7 152 54.6
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 4.3e-32 141.7 145 55.2
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 4.3e-32 141.7 141 56.7
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 9.5e-32 140.6 134 56.7
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 9.5e-32 140.6 135 56.3
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 2.8e-31 139.0 118 62.7
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 3.6e-31 138.7 143 57.3
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 4.7e-31 138.3 145 55.2
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 6.2e-31 137.9 144 57.6
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 1.1e-30 137.1 148 56.1
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 1.4e-30 136.7 141 56.0
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 2.4e-30 136.0 147 55.1
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.4e-30 136.0 146 54.8
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 3.1e-30 135.6 136 54.4
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 4.0e-30 135.2 131 54.2
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 5.2e-30 134.8 139 54.7
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 5.2e-30 134.8 151 54.3
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 5.2e-30 134.8 135 54.1
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 6.8e-30 134.4 136 54.4
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 6.8e-30 134.4 143 54.5
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 2.6e-29 132.5 140 50.7
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 3.4e-29 132.1 143 54.5
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 5.8e-29 131.3 138 55.1
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 7.6e-29 131.0 134 54.5
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 7.6e-29 131.0 141 55.3
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 9.9e-29 130.6 135 54.8
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 1.7e-28 129.8 147 49.0
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 2.2e-28 129.4 135 54.8
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 3.8e-28 128.6 91 71.4
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 6.4e-28 127.9 136 52.2
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.1e-27 127.1 149 52.3
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.4e-27 126.7 128 49.2
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.4e-27 126.7 137 55.5
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 2.4e-27 125.9 132 50.0
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 2.4e-27 125.9 144 52.1
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 3.2e-27 125.6 89 68.5
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 3.2e-27 125.6 139 53.2
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 5.4e-27 124.8 156 48.7
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 1.2e-26 123.6 154 49.4
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 1.6e-26 123.2 137 52.6
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.6e-26 123.2 137 46.7
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.1e-26 122.9 137 52.6
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 2.7e-26 122.5 89 66.3
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 6.0e-26 121.3 144 47.2
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 6.0e-26 121.3 139 51.8
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.0e-25 120.6 89 66.3
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.7e-25 119.8 145 54.5
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 6.6e-25 117.9 141 48.2
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 1.9e-24 116.3 131 50.4
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 2.5e-24 115.9 118 53.4
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 9.6e-24 114.0 125 48.8
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 9.6e-24 114.0 101 53.5
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 9.6e-24 114.0 147 44.9
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.2e-23 113.6 150 44.0
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 1.2e-23 113.6 91 58.2
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 1.2e-23 113.6 147 44.9
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.2e-23 113.6 162 48.1
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.6e-23 113.2 158 48.7
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.6e-23 113.2 105 55.2
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 4.7e-23 111.7 66 81.8
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 6.2e-23 111.3 150 43.3
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 8.1e-23 110.9 142 47.2
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.1e-22 110.5 83 63.9
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 1.1e-22 110.5 129 49.6
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 1.1e-22 110.5 91 56.0
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 4.0e-22 108.6 146 43.2
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 5.2e-22 108.2 137 47.4
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.5e-21 106.7 75 68.0
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 4.4e-21 105.1 154 44.8
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 1.3e-20 103.6 149 45.0
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 1.3e-20 103.6 149 43.6
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 3.8e-20 102.1 137 44.5
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 6.4e-20 101.3 90 56.7
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 8.4e-20 100.9 135 44.4
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 8.4e-20 100.9 135 44.4
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 2.7e-18 95.9 103 52.4
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 4.6e-18 95.1 124 42.7
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 2.3e-17 92.8 120 46.7
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 5.1e-17 91.7 142 41.5
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.1e-16 90.5 131 43.5
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.5e-16 89.4 134 43.3
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 6.2e-15 84.7 151 37.7
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 6.2e-15 84.7 108 44.4
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 9.0e-14 80.9 102 47.1
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 5.8e-13 78.2 145 38.6
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 2.2e-12 76.3 136 40.4
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 8.4e-12 74.3 92 50.0
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 1.1e-11 73.9 131 35.9
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 9.3e-11 70.9 87 49.4
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 9.3e-11 70.9 53 64.2
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.6e-10 70.1 137 37.2
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 4.6e-10 68.6 86 41.9
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 4.6e-10 68.6 46 69.6
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 1.8e-09 66.6 94 43.6
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 5.6e-08 61.6 90 41.1
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 9.6e-08 60.8 43 67.4
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 3.7e-07 58.9 136 37.5
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 4.8e-07 58.5 69 43.5


User provided reference genes

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