Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 2.3e-219 765.4 413 100.0
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 1.6e-196 689.5 413 91.0
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 7.9e-196 687.2 413 86.2
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 1.5e-194 682.9 413 89.1
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 1.5e-194 682.9 414 86.7
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 2.5e-194 682.2 414 86.7
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 2.5e-194 682.2 414 86.7
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 4.3e-194 681.4 414 86.5
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 9.6e-194 680.2 414 89.9
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 1.1e-192 676.8 416 85.1
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 4.0e-192 674.9 413 85.0
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 1.9e-178 629.4 413 78.5
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 3.9e-171 605.1 420 72.4
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 1.8e-168 596.3 440 68.9
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 5.3e-168 594.7 419 73.5
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 1.5e-167 593.2 420 71.4
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 2.6e-167 592.4 449 67.5
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 4.5e-167 591.7 414 78.3
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.0e-166 590.5 419 71.8
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 1.0e-166 590.5 414 73.9
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 1.3e-166 590.1 380 81.8
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.2e-166 589.3 419 71.8
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.2e-166 589.3 418 74.6
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 2.9e-166 589.0 418 71.1
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 6.5e-166 587.8 418 71.1
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 8.5e-166 587.4 357 79.0
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 8.5e-166 587.4 400 72.8
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 8.5e-166 587.4 415 77.1
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 1.1e-165 587.0 413 70.7
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.1e-165 587.0 418 71.1
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 1.4e-165 586.6 416 76.9
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 1.9e-165 586.3 357 79.8
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 2.5e-165 585.9 414 73.2
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 4.2e-165 585.1 356 84.8
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 5.5e-165 584.7 413 71.9
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 5.5e-165 584.7 373 77.2
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 9.4e-165 583.9 417 71.2
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 9.4e-165 583.9 415 70.8
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.6e-164 583.2 415 72.0
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 1.6e-164 583.2 406 76.6
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 1.6e-164 583.2 420 76.2
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 4.6e-164 581.6 357 78.4
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 6.1e-164 581.3 401 76.6
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 7.9e-164 580.9 461 66.6
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 7.9e-164 580.9 413 70.7
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 1.0e-163 580.5 420 75.7
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 1.0e-163 580.5 423 69.5
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 2.3e-163 579.3 357 78.7
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 5.1e-163 578.2 356 78.7
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 5.1e-163 578.2 400 72.5
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 8.8e-163 577.4 420 70.7
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 2.0e-162 576.2 356 77.5
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 5.7e-162 574.7 415 74.5
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 7.4e-162 574.3 385 79.2
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 1.3e-161 573.5 379 74.9
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 1.3e-161 573.5 417 72.2
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.7e-161 573.2 361 78.4
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 1.7e-161 573.2 412 75.5
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 4.8e-161 571.6 441 72.3
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 6.3e-161 571.2 418 71.3
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 8.2e-161 570.9 361 77.0
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 1.8e-160 569.7 386 73.6
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 1.8e-160 569.7 363 77.1
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 2.4e-160 569.3 418 70.3
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 2.4e-160 569.3 353 83.0
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 5.3e-160 568.2 425 73.4
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 6.9e-160 567.8 355 83.9
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 9.1e-160 567.4 382 73.0
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 2.0e-159 566.2 357 76.5
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 5.9e-159 564.7 426 67.6
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 5.9e-159 564.7 359 81.1
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 1.0e-158 563.9 410 74.1
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 1.3e-158 563.5 373 73.5
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 2.9e-158 562.4 391 72.1
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 3.8e-158 562.0 420 72.9
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 8.5e-158 560.8 427 69.6
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 2.5e-157 559.3 362 75.1
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 4.2e-157 558.5 383 73.1
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 5.5e-157 558.1 359 75.5
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 2.1e-156 556.2 357 75.9
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 2.7e-156 555.8 363 74.4
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 7.9e-156 554.3 354 81.4
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 1.0e-155 553.9 433 67.0
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 1.8e-155 553.1 359 80.5
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 2.3e-155 552.7 430 66.3
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 3.0e-155 552.4 377 72.4
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 8.8e-155 550.8 425 67.3
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 1.5e-154 550.1 398 69.8
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 3.3e-154 548.9 368 78.0
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 2.2e-153 546.2 327 84.7
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 2.2e-153 546.2 327 84.7
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 5.3e-152 541.6 358 75.1
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 3.2e-149 532.3 413 65.9
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 2.1e-148 529.6 476 64.1
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 3.6e-148 528.9 342 76.3
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 3.0e-147 525.8 480 57.7
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 8.8e-147 524.2 337 81.6
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 1.1e-146 523.9 380 75.3
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 1.1e-146 523.9 377 67.4
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.5e-146 523.5 358 77.4
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 7.5e-146 521.2 358 77.7
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 1.7e-145 520.0 331 76.7
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.1e-141 507.3 540 56.5
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 4.2e-141 505.4 407 65.4
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 1.2e-140 503.8 418 68.2
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 9.8e-138 494.2 599 51.6
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 4.5e-135 485.3 358 66.5
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 2.2e-129 466.5 485 57.7
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 1.7e-121 440.3 384 62.8
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 3.6e-116 422.5 443 59.8
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 3.2e-112 409.5 333 67.0
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 3.1e-107 392.9 357 59.7
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 7.5e-106 388.3 203 89.7
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 1.3e-105 387.5 359 60.4
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 3.5e-95 352.8 209 80.9
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 6.6e-78 295.4 298 56.0
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 5.3e-59 232.6 351 42.2
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 8.5e-57 225.3 114 89.5
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 4.3e-53 213.0 181 65.2
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 7.4e-45 185.7 211 54.0
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 4.1e-43 179.9 122 72.1
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 5.9e-42 176.0 111 75.7
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 2.7e-31 140.6 69 89.9
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 5.3e-27 126.3 73 84.9
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 1.2e-26 125.2 85 70.6
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 1.7e-25 121.3 84 69.0
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 4.8e-20 103.2 53 86.8
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 5.4e-19 99.8 103 54.4
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 5.5e-16 89.7 43 93.0
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 4.4e-13 80.1 62 66.1
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 1.4e-11 75.1 61 63.9
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 7.0e-11 72.8 70 58.6
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 9.2e-11 72.4 43 74.4
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 2.9e-09 67.4 38 73.7
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 4.3e-08 63.5 61 54.1
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 4.7e-07 60.1 44 59.1


User provided reference genes

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