Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 0.0e+00 1662.5 903 100.0
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 0.0e+00 1343.9 921 79.9
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 0.0e+00 1266.9 930 75.3
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 0.0e+00 1265.8 924 76.9
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 1.3e-288 996.5 880 64.8
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 1.7e-280 969.5 941 60.6
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 9.5e-279 963.8 940 58.8
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 4.0e-277 958.4 956 59.0
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 8.9e-277 957.2 856 62.1
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 5.8e-276 954.5 955 57.8
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 5.8e-276 954.5 952 58.2
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 9.8e-276 953.7 962 59.5
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 1.3e-272 943.3 914 60.5
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 2.9e-267 925.6 884 60.7
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 1.6e-265 919.8 943 56.9
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 2.7e-265 919.1 928 57.3
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 5.1e-264 914.8 868 60.5
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 3.3e-263 912.1 937 57.8
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 5.6e-263 911.4 946 56.8
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.4e-261 906.7 859 59.7
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.1e-261 905.6 952 56.4
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 6.8e-261 904.4 893 58.6
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 2.0e-260 902.9 948 56.9
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 2.6e-260 902.5 959 56.0
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 1.3e-259 900.2 946 57.2
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 2.2e-259 899.4 873 59.3
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 2.2e-259 899.4 875 58.3
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 4.9e-259 898.3 948 56.6
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 1.4e-258 896.7 940 57.1
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 2.4e-258 896.0 850 60.0
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.7e-256 889.8 852 59.4
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.5e-255 886.7 947 55.0
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 3.3e-255 885.6 845 59.2
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 3.3e-255 885.6 835 58.9
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 1.2e-254 883.6 906 57.4
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.6e-254 883.2 857 58.8
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 2.8e-254 882.5 965 56.3
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 6.9e-253 877.9 936 55.7
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 2.6e-252 875.9 944 55.9
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 9.9e-252 874.0 884 59.7
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 3.8e-251 872.1 873 58.2
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 4.9e-251 871.7 944 55.6
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 2.1e-249 866.3 962 53.5
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 7.8e-249 864.4 916 56.7
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 7.8e-249 864.4 899 56.2
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 1.0e-248 864.0 940 56.0
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 3.9e-248 862.1 882 56.8
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 6.6e-248 861.3 918 55.6
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 2.5e-247 859.4 946 55.8
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 1.6e-246 856.7 956 53.2
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 3.1e-245 852.4 844 56.6
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 9.0e-245 850.9 924 55.1
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 6.4e-243 844.7 930 54.9
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.4e-242 843.6 937 52.7
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 9.3e-242 840.9 932 55.3
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 6.0e-241 838.2 887 56.5
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.5e-239 832.8 989 51.2
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 7.4e-239 831.2 885 54.9
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 6.2e-238 828.2 871 56.3
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 6.2e-238 828.2 885 54.8
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.8e-237 826.6 974 51.7
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 2.4e-237 826.2 927 55.1
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 2.4e-237 826.2 954 53.9
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 3.1e-237 825.9 876 56.2
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 3.4e-236 822.4 920 53.6
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 1.7e-235 820.1 891 55.2
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 3.2e-234 815.8 930 52.4
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 4.2e-234 815.5 894 53.6
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 9.3e-234 814.3 926 54.9
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 2.1e-233 813.1 881 54.5
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 6.0e-233 811.6 927 53.4
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 2.5e-231 806.2 901 54.3
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 1.3e-230 803.9 862 54.5
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 1.3e-230 803.9 849 56.8
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.2e-228 797.3 796 57.9
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 1.2e-228 797.3 901 54.4
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.7e-227 793.5 481 87.7
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 3.2e-226 789.3 796 55.5
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 1.2e-225 787.3 768 59.5
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 1.9e-223 780.0 886 55.1
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 6.5e-219 765.0 953 51.1
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 1.9e-218 763.5 928 51.6
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 1.9e-218 763.5 928 51.6
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 2.5e-218 763.1 976 49.0
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 3.2e-218 762.7 913 51.2
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 1.0e-216 757.7 910 51.9
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 6.7e-216 755.0 949 50.2
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 4.3e-215 752.3 975 49.9
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 5.7e-215 751.9 931 50.9
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 8.2e-214 748.0 943 49.2
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.1e-213 747.7 937 50.6
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 1.4e-213 747.3 931 50.4
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 1.7e-211 740.3 949 49.1
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 3.8e-211 739.2 865 52.5
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 3.9e-208 729.2 919 51.3
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 5.7e-207 725.3 931 50.4
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 5.7e-207 725.3 944 50.3
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 3.8e-203 712.6 942 48.5
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 1.4e-200 704.1 938 48.7
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 1.8e-200 703.7 914 48.8
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 7.0e-197 691.8 914 48.2
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 9.1e-197 691.4 700 56.0
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 2.9e-195 686.4 977 45.2
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 9.4e-194 681.4 829 49.5
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 4.7e-193 679.1 977 45.9
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 1.4e-189 667.5 862 48.3
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 3.2e-186 656.4 404 91.6
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 5.5e-186 655.6 621 57.3
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 9.5e-178 628.2 485 67.2
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 6.6e-171 605.5 913 42.8
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 7.8e-164 582.0 913 42.2
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 4.3e-162 576.2 1024 39.7
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 2.8e-161 573.5 867 43.6
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 1.2e-156 558.1 477 61.4
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 3.1e-144 516.9 843 41.3
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 2.1e-121 441.0 544 48.5
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 1.4e-112 411.8 598 41.8
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 8.5e-102 375.9 482 47.7
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 1.5e-90 338.6 316 56.3
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 1.4e-88 332.0 357 57.7
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 2.3e-83 314.7 442 45.2
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 6.3e-81 306.6 449 44.5
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 8.2e-81 306.2 373 53.1
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 5.3e-80 303.5 465 48.0
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 1.2e-76 292.4 294 52.7
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.3e-73 282.3 263 57.4
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 1.7e-70 271.9 332 46.7
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 2.3e-67 261.5 415 49.9
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 1.6e-63 248.8 499 32.3
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 1.0e-62 246.1 182 70.3
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 2.3e-59 235.0 171 68.4
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 3.4e-50 204.5 610 26.7
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 3.7e-49 201.1 420 43.1
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 1.1e-37 162.9 96 84.4
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 7.3e-29 133.7 151 55.0
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 2.1e-28 132.1 151 55.0
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 2.3e-22 112.1 77 70.1
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.5e-21 108.6 215 37.7
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 5.6e-21 107.5 88 59.1
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 3.4e-18 98.2 65 75.4
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 3.8e-17 94.7 85 49.4
EL10As3g23368 Beta vulgaris HOM05D004199 ORTHO05D019838 7.1e-16 90.5 131 50.4
EL10Ac7g17540 Beta vulgaris HOM05D000966 ORTHO05D019838 1.0e-14 86.7 70 71.4
EL10Ac2g03784 Beta vulgaris HOM05D004199 ORTHO05D019838 1.3e-14 86.3 70 71.4
EL10Ac3g06366 Beta vulgaris HOM05D004199 ORTHO05D019838 1.3e-14 86.3 70 71.4
EL10Ac5g11475 Beta vulgaris HOM05D000966 ORTHO05D019838 6.6e-14 84.0 119 51.3
EL10Ac5g11598 Beta vulgaris HOM05D004199 ORTHO05D088829 1.1e-13 83.2 61 75.4
EL10Ac5g11597 Beta vulgaris HOM05D004199 ORTHO05D019838 3.6e-12 78.2 157 38.2
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 6.2e-12 77.4 76 53.9
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.4e-11 76.3 90 53.3
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.3e-09 69.7 129 33.3
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.1e-08 66.6 90 44.4
Zm00001eb127560 Zea mays HOM05D004199 ORTHO05D005905 4.2e-08 64.7 236 31.8
Aqoxy5G02943 Aquilegia oxysepala HOM05D004199 ORTHO05D077991 1.2e-07 63.2 40 62.5
Sabra10G0198200 Salix brachista HOM05D004199 ORTHO05D349944 1.3e-06 59.7 142 36.6


User provided reference genes

Program Settings