Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.6e-166 589.3 291 100.0
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.6e-166 589.3 291 100.0
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 4.3e-164 581.3 291 98.3
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 1.6e-158 562.8 291 95.2
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.1e-151 540.0 288 91.7
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.1e-151 540.0 288 91.7
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 6.0e-150 534.3 291 88.3
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 6.6e-149 530.8 291 87.6
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 1.5e-148 529.6 291 87.6
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 1.9e-148 529.3 291 87.3
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 2.5e-148 528.9 291 88.0
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 3.3e-148 528.5 291 87.3
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 4.3e-148 528.1 291 87.6
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 4.3e-148 528.1 291 87.6
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 5.6e-148 527.7 291 87.3
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 5.6e-148 527.7 290 88.6
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 7.3e-148 527.3 291 85.9
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.2e-147 526.6 291 87.6
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 1.2e-147 526.6 291 87.6
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.6e-147 526.2 291 88.0
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 2.1e-147 525.8 291 85.9
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 2.1e-147 525.8 291 86.3
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 2.8e-147 525.4 291 88.3
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 3.6e-147 525.0 291 86.9
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 3.6e-147 525.0 291 87.3
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 4.7e-147 524.6 291 85.9
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 6.2e-147 524.2 288 87.2
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 8.1e-147 523.9 292 87.3
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 1.1e-146 523.5 291 85.6
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.1e-146 523.5 291 84.9
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 1.4e-146 523.1 288 87.2
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 1.4e-146 523.1 291 86.9
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 1.8e-146 522.7 291 86.9
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 1.8e-146 522.7 291 86.6
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.8e-146 522.7 291 86.3
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 1.8e-146 522.7 287 87.1
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 4.0e-146 521.5 289 85.8
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 5.2e-146 521.2 290 86.9
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 6.9e-146 520.8 289 87.9
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 6.9e-146 520.8 290 86.6
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 9.0e-146 520.4 291 85.2
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 1.2e-145 520.0 289 86.2
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 1.2e-145 520.0 288 86.1
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 1.2e-145 520.0 291 86.3
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.5e-145 519.6 290 87.2
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 1.5e-145 519.6 291 86.3
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 1.5e-145 519.6 291 86.3
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 1.5e-145 519.6 291 86.9
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 2.0e-145 519.2 291 86.3
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 2.0e-145 519.2 292 86.0
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 2.6e-145 518.8 291 85.6
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 2.6e-145 518.8 290 86.6
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 3.4e-145 518.5 291 85.9
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 3.4e-145 518.5 291 85.6
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 3.4e-145 518.5 291 85.6
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 4.4e-145 518.1 291 86.3
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 4.4e-145 518.1 288 86.8
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 4.4e-145 518.1 288 85.4
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 9.9e-145 516.9 291 85.2
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.3e-144 516.5 291 86.3
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.3e-144 516.5 291 85.6
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 1.7e-144 516.2 288 85.4
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 2.2e-144 515.8 298 83.6
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 2.2e-144 515.8 291 85.6
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 2.9e-144 515.4 290 86.2
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 2.9e-144 515.4 291 84.5
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 3.8e-144 515.0 296 84.8
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 3.8e-144 515.0 291 84.9
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 4.9e-144 514.6 291 84.2
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 6.4e-144 514.2 291 84.2
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 6.4e-144 514.2 292 86.6
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 6.4e-144 514.2 291 84.5
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 8.4e-144 513.8 290 87.9
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 8.4e-144 513.8 287 85.4
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 1.4e-143 513.1 291 84.9
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 1.9e-143 512.7 291 85.2
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 2.4e-143 512.3 291 85.2
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 2.4e-143 512.3 288 85.4
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 2.4e-143 512.3 291 86.6
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 4.2e-143 511.5 291 84.5
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 7.1e-143 510.8 295 85.4
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.6e-142 509.6 273 91.2
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 2.1e-142 509.2 292 85.6
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 2.7e-142 508.8 273 90.8
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 2.7e-142 508.8 288 84.7
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 4.6e-142 508.1 312 80.4
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 6.0e-142 507.7 288 84.7
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 1.0e-141 506.9 275 88.4
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 1.3e-141 506.5 288 83.3
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 2.3e-141 505.8 287 85.0
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.3e-141 505.8 322 78.0
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 8.7e-141 503.8 288 83.7
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 2.5e-140 502.3 291 84.9
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 5.6e-140 501.1 291 84.5
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 7.3e-140 500.7 291 84.2
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 8.1e-139 497.3 296 83.4
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 1.8e-138 496.1 291 82.1
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 3.1e-138 495.4 272 85.7
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 1.2e-137 493.4 278 86.3
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 2.0e-137 492.7 287 83.6
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 2.0e-137 492.7 286 83.2
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 7.6e-137 490.7 274 86.9
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 6.4e-136 487.6 286 83.2
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 1.1e-135 486.9 273 86.1
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.9e-135 486.1 288 82.6
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 2.4e-135 485.7 290 81.7
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 4.2e-135 485.0 272 85.3
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 5.4e-135 484.6 366 68.6
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 7.1e-135 484.2 272 85.3
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 1.2e-134 483.4 280 83.9
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 6.0e-134 481.1 273 85.3
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 3.9e-133 478.4 300 79.3
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 5.1e-133 478.0 293 81.9
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 8.7e-133 477.2 272 86.8
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 5.6e-132 474.6 312 76.6
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 3.7e-131 471.9 272 85.7
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 6.2e-131 471.1 273 84.2
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 8.1e-131 470.7 284 81.7
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.1e-130 470.3 296 78.7
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.1e-130 470.3 296 78.7
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.4e-130 469.9 259 86.9
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 8.4e-128 460.7 291 78.0
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 1.9e-127 459.5 283 77.4
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 2.1e-126 456.1 258 86.8
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 2.7e-126 455.7 253 86.2
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 4.6e-126 454.9 271 79.7
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 3.9e-125 451.8 253 85.0
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 6.2e-123 444.5 291 76.3
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 8.2e-123 444.1 305 74.4
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 1.4e-122 443.4 286 71.3
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 1.4e-122 443.4 324 69.4
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 3.1e-122 442.2 238 89.1
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 4.0e-122 441.8 254 85.0
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 2.2e-120 436.0 247 83.8
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 1.9e-119 433.0 242 86.0
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 9.3e-119 430.6 290 75.5
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 5.0e-112 408.3 287 68.3
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 6.1e-110 401.4 220 86.8
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 3.0e-109 399.1 397 56.4
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 2.8e-107 392.5 275 73.1
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 1.6e-94 350.1 198 85.4
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 2.7e-94 349.4 273 67.4
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 1.5e-92 343.6 190 84.2
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 3.8e-88 328.9 173 90.8
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 2.1e-86 323.2 271 63.8
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 4.0e-85 318.9 288 60.4
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 8.3e-83 311.2 278 59.7
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 7.7e-73 278.1 172 76.2
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 1.7e-72 276.9 243 60.9
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 2.6e-68 263.1 261 49.4
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.4e-66 256.5 194 70.1
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 7.8e-49 198.4 193 58.0
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 3.9e-48 196.1 133 73.7
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 3.9e-48 196.1 133 73.7
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 1.3e-35 154.5 141 59.6
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 3.1e-29 133.3 129 58.1
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 2.7e-25 120.2 91 64.8
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 5.6e-23 112.5 66 77.3
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 2.1e-22 110.5 72 66.7
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 6.2e-22 109.0 88 65.9
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 6.2e-22 109.0 88 65.9
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 1.1e-21 108.2 65 78.5
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 2.3e-16 90.5 51 78.4
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 1.3e-14 84.7 46 87.0
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 3.1e-13 80.1 45 80.0
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 4.2e-10 69.7 90 51.1
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 4.2e-10 69.7 90 51.1
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 5.1e-08 62.8 45 62.2
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 5.1e-08 62.8 39 79.5
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 8.2e-06 55.5 32 78.1


User provided reference genes

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