Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 4.8e-61 237.7 121 100.0
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.0e-54 215.7 119 91.6
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.3e-45 186.4 119 78.2
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 9.2e-36 153.7 119 67.2
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 1.8e-28 129.4 120 60.0
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 5.9e-27 124.4 123 54.5
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 2.5e-25 119.0 122 54.1
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 1.2e-24 116.7 119 51.3
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 1.0e-23 113.6 120 50.8
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 1.0e-23 113.6 119 50.4
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 3.1e-23 112.1 119 52.1
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 4.0e-23 111.7 125 51.2
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 6.8e-23 110.9 122 51.6
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 1.5e-22 109.8 121 50.4
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 4.4e-22 108.2 123 50.4
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 4.4e-22 108.2 121 50.4
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 9.8e-22 107.1 123 51.2
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 9.8e-22 107.1 120 50.8
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 9.8e-22 107.1 120 50.8
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 1.7e-21 106.3 122 50.0
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 2.2e-21 105.9 123 49.6
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 4.9e-21 104.8 120 49.2
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 8.3e-21 104.0 123 48.8
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 1.1e-20 103.6 118 50.0
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.4e-20 103.2 122 50.0
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.4e-20 103.2 119 47.1
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 1.9e-20 102.8 122 47.5
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 3.2e-20 102.1 122 48.4
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.2e-20 102.1 122 48.4
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 3.2e-20 102.1 121 47.9
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 4.1e-20 101.7 122 49.2
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 4.1e-20 101.7 122 49.2
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 4.1e-20 101.7 123 50.4
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 4.1e-20 101.7 122 48.4
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 5.4e-20 101.3 123 49.6
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 7.0e-20 100.9 124 48.4
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 7.0e-20 100.9 124 46.0
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.2e-19 100.1 122 50.8
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 1.2e-19 100.1 119 47.9
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 1.2e-19 100.1 125 47.2
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 1.2e-19 100.1 120 48.3
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 1.6e-19 99.8 126 44.4
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 2.0e-19 99.4 123 49.6
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 3.5e-19 98.6 121 47.9
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 3.5e-19 98.6 122 48.4
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 3.5e-19 98.6 122 45.9
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 3.5e-19 98.6 125 48.0
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 4.6e-19 98.2 122 45.9
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 6.0e-19 97.8 121 47.9
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 7.8e-19 97.4 120 44.2
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 7.8e-19 97.4 120 43.3
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 7.8e-19 97.4 119 46.2
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 1.3e-18 96.7 121 46.3
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 3.0e-18 95.5 124 49.2
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 3.9e-18 95.1 118 44.1
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 1.1e-17 93.6 126 45.2
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 1.1e-17 93.6 85 50.6
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 1.5e-17 93.2 118 45.8
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 1.9e-17 92.8 118 43.2
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 2.5e-17 92.4 122 47.5
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 2.5e-17 92.4 109 47.7
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 3.3e-17 92.0 122 44.3
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 4.3e-17 91.7 130 43.1
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 5.6e-17 91.3 76 53.9
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 9.5e-17 90.5 92 46.7
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 9.5e-17 90.5 89 50.6
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 9.5e-17 90.5 89 50.6
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 9.5e-17 90.5 119 47.1
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.2e-16 90.1 84 53.6
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 1.2e-16 90.1 135 39.3
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 1.2e-16 90.1 135 39.3
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 1.6e-16 89.7 120 41.7
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 2.1e-16 89.4 130 45.4
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 2.1e-16 89.4 121 46.3
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 2.1e-16 89.4 122 41.0
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 2.1e-16 89.4 121 43.0
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 2.8e-16 89.0 89 49.4
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 2.8e-16 89.0 124 45.2
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 2.8e-16 89.0 121 42.1
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 2.8e-16 89.0 121 42.1
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 2.8e-16 89.0 118 40.7
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 3.6e-16 88.6 123 47.2
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 4.7e-16 88.2 63 60.3
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 8.1e-16 87.4 121 41.3
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 1.8e-15 86.3 118 40.7
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 1.8e-15 86.3 93 46.2
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 1.8e-15 86.3 93 46.2
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 2.3e-15 85.9 118 41.5
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 3.1e-15 85.5 118 39.0
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 3.1e-15 85.5 93 46.2
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 3.1e-15 85.5 129 42.6
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 3.1e-15 85.5 121 44.6
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 3.1e-15 85.5 118 42.4
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 5.2e-15 84.7 90 48.9
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 5.2e-15 84.7 90 48.9
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 1.2e-14 83.6 93 45.2
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.2e-14 83.6 120 43.3
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.2e-14 83.6 120 43.3
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 2.0e-14 82.8 85 48.2
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 4.4e-14 81.6 118 40.7
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 4.4e-14 81.6 85 48.2
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 4.4e-14 81.6 85 48.2
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 5.8e-14 81.3 123 37.4
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 9.8e-14 80.5 121 41.3
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.1e-12 77.0 170 33.5
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 4.1e-12 75.1 121 42.1
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 1.2e-11 73.6 195 30.8
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 2.7e-11 72.4 95 35.8
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 1.0e-10 70.5 61 52.5
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 1.3e-10 70.1 77 50.6
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 1.3e-10 70.1 124 37.1
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 3.9e-10 68.6 129 38.0
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 5.1e-10 68.2 113 38.9
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 7.3e-09 64.3 62 46.8
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.1e-08 62.8 38 73.7
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 1.1e-07 60.5 108 30.6
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 2.0e-06 56.2 124 33.1
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 3.4e-06 55.5 80 33.8
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 5.8e-06 54.7 119 27.7


User provided reference genes

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