Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62037316 Chenopodium quinoa HOM05D001374 ORTHO05D004296 4.2e-89 331.3 159 100.0
AUR62002847 Chenopodium quinoa HOM05D001374 ORTHO05D004296 9.1e-84 313.5 159 94.3
Ah.03g138230 Amaranthus hybridus HOM05D001374 ORTHO05D004296 3.9e-79 298.1 159 89.9
AUR62002537 Chenopodium quinoa HOM05D001374 ORTHO05D004296 3.1e-76 288.5 159 87.4
EL10Ac6g14344 Beta vulgaris HOM05D001374 ORTHO05D004296 5.9e-75 284.3 159 83.0
EL10Ac7g17806 Beta vulgaris HOM05D001374 ORTHO05D004296 5.9e-75 284.3 159 84.3
Cc11_g09920 Coffea canephora HOM05D001374 ORTHO05D004296 2.9e-74 282.0 159 82.4
Hund20774 Selenicereus undatus HOM05D001374 ORTHO05D004296 1.9e-73 279.3 179 77.1
Glyma.20G117100 Glycine max HOM05D001374 ORTHO05D004296 3.2e-73 278.5 159 79.9
CAN.G610.65 Capsicum annuum HOM05D001374 ORTHO05D004296 4.2e-73 278.1 159 83.0
Prupe.1G313400 Prunus persica HOM05D001374 ORTHO05D004296 4.2e-73 278.1 159 82.4
CSS0016974 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 7.2e-73 277.3 159 81.8
AUR62023655 Chenopodium quinoa HOM05D001374 ORTHO05D004296 7.2e-73 277.3 159 84.9
MSTRG.850 Avicennia marina HOM05D001374 ORTHO05D004296 9.4e-73 276.9 159 79.9
Glyma.10G272800 Glycine max HOM05D001374 ORTHO05D004296 1.2e-72 276.6 159 79.2
GSVIVG01011871001 Vitis vinifera HOM05D001374 ORTHO05D004296 1.2e-72 276.6 159 81.1
CSS0047778 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 1.6e-72 276.2 159 82.4
PGSC0003DMG400014572 Solanum tuberosum HOM05D001374 ORTHO05D004296 2.1e-72 275.8 159 82.4
TAR371G0094 Trochodendron aralioides HOM05D001374 ORTHO05D004296 2.1e-72 275.8 157 80.9
Phvul.007G028800 Phaseolus vulgaris HOM05D001374 ORTHO05D004296 2.7e-72 275.4 159 78.6
CSS0034691 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 3.6e-72 275.0 159 81.1
Solyc05g009220.3 Solanum lycopersicum HOM05D001374 ORTHO05D004296 3.6e-72 275.0 159 82.4
CiPaw.06G018700 Carya illinoinensis HOM05D001374 ORTHO05D004296 4.7e-72 274.6 159 81.1
Actinidia14906 Actinidia chinensis HOM05D001374 ORTHO05D004296 6.1e-72 274.2 159 80.5
Cpa.g.sc798.2 Carica papaya HOM05D001374 ORTHO05D004296 1.0e-71 273.5 157 81.5
Sopen05g004940 Solanum pennellii HOM05D001374 ORTHO05D004296 1.0e-71 273.5 159 81.8
MD13G1039800 Malus domestica HOM05D001374 ORTHO05D004296 1.8e-71 272.7 159 81.1
VMungo0720G1962 Vigna mungo HOM05D001374 ORTHO05D004296 1.8e-71 272.7 159 78.0
DCAR_021035 Daucus carota HOM05D001374 ORTHO05D004296 2.3e-71 272.3 159 80.5
Dinv21063 Davidia involucrata HOM05D001374 ORTHO05D004296 2.3e-71 272.3 158 80.4
Rhsim09G0106300 Rhododendron simsii HOM05D001374 ORTHO05D004296 4.0e-71 271.6 160 80.0
CiPaw.05G239400 Carya illinoinensis HOM05D001374 ORTHO05D004296 5.2e-71 271.2 159 79.2
GSVIVG01018308001 Vitis vinifera HOM05D001374 ORTHO05D004296 5.2e-71 271.2 159 79.9
Lj6C756T1 Lonicera japonica HOM05D001374 ORTHO05D004296 6.8e-71 270.8 157 81.5
QL01p040852 Quercus lobata HOM05D001374 ORTHO05D004296 1.2e-70 270.0 158 79.7
Dinv31622 Davidia involucrata HOM05D001374 ORTHO05D004296 1.5e-70 269.6 158 80.4
Hma1.2p1_0061F.1_g033680 Hydrangea macrophylla HOM05D001374 ORTHO05D004296 1.5e-70 269.6 159 79.9
Lalb_Chr02g0145891 Lupinus albus HOM05D001374 ORTHO05D004296 1.5e-70 269.6 159 78.6
MSTRG.2228 Avicennia marina HOM05D001374 ORTHO05D004296 3.4e-70 268.5 159 78.0
MD16G1040700 Malus domestica HOM05D001374 ORTHO05D004296 3.4e-70 268.5 157 79.0
Oeu054996.3 Olea europaea HOM05D001374 ORTHO05D004296 3.4e-70 268.5 159 78.6
Sc14g0007390 Simmondsia chinensis HOM05D001374 ORTHO05D004296 3.4e-70 268.5 159 79.2
arahy.Tifrunner.gnm1.ann1.DTRW9U Arachis hypogaea HOM05D001374 ORTHO05D004296 4.4e-70 268.1 159 76.7
Lj4g0028120 Lotus japonicus HOM05D001374 ORTHO05D004296 4.4e-70 268.1 159 78.0
Manes.14G104300 Manihot esculenta HOM05D001374 ORTHO05D004296 4.4e-70 268.1 159 78.6
Haze_00619 Corylus avellana HOM05D001374 ORTHO05D004296 5.7e-70 267.7 159 80.5
ATR0691G154 Amborella trichopoda HOM05D001374 ORTHO05D004296 7.5e-70 267.3 157 79.0
CDE06G1000 Ceratophyllum demersum HOM05D001374 ORTHO05D004296 7.5e-70 267.3 158 78.5
Ciclev10014320m.g Citrus clementina HOM05D001374 ORTHO05D004296 9.8e-70 266.9 159 78.0
MELO3C023301.2 Cucumis melo HOM05D001374 ORTHO05D004296 2.2e-69 265.8 153 81.7
Thecc.07G144700 Theobroma cacao HOM05D001374 ORTHO05D004296 2.2e-69 265.8 159 78.6
Aqoxy3G00265 Aquilegia oxysepala HOM05D001374 ORTHO05D004296 2.8e-69 265.4 157 79.0
Duzib248G1131 Durio zibethinus HOM05D001374 ORTHO05D004296 2.8e-69 265.4 159 78.0
TWI79G1774 Tripterygium wilfordii HOM05D001374 ORTHO05D004296 3.7e-69 265.0 159 76.7
arahy.Tifrunner.gnm1.ann1.VKD07K Arachis hypogaea HOM05D001374 ORTHO05D004296 4.8e-69 264.6 159 76.1
DCAR_023648 Daucus carota HOM05D001374 ORTHO05D004296 4.8e-69 264.6 159 78.0
Gohir.A05G321600 Gossypium hirsutum HOM05D001374 ORTHO05D004296 4.8e-69 264.6 159 77.4
Psat6g226160 Pisum sativum HOM05D001374 ORTHO05D004296 4.8e-69 264.6 159 76.1
HPP92_021791 Vanilla planifolia HOM05D001374 ORTHO05D004296 6.3e-69 264.2 158 77.2
BcaC05g26679 Brassica carinata HOM05D001374 ORTHO05D004296 8.3e-69 263.8 160 78.8
Lalb_Chr06g0166001 Lupinus albus HOM05D001374 ORTHO05D004296 8.3e-69 263.8 159 77.4
ClCG02G012120 Citrullus lanatus HOM05D001374 ORTHO05D004296 1.4e-68 263.1 153 80.4
Duzib251G0305 Durio zibethinus HOM05D001374 ORTHO05D004296 1.4e-68 263.1 159 77.4
A09p39220 Brassica napus HOM05D001374 ORTHO05D004296 1.8e-68 262.7 160 78.1
BraA09t39421Z Brassica rapa HOM05D001374 ORTHO05D004296 1.8e-68 262.7 160 78.1
CsaV3_2G014770 Cucumis sativus L. HOM05D001374 ORTHO05D004296 1.8e-68 262.7 153 81.0
Gohir.D05G323900 Gossypium hirsutum HOM05D001374 ORTHO05D004296 1.8e-68 262.7 159 77.4
Aa31LG2G6960 Aethionema arabicum HOM05D001374 ORTHO05D004296 2.4e-68 262.3 159 76.1
Cfa015867 Carpinus fangiana HOM05D001374 ORTHO05D004296 2.4e-68 262.3 159 78.6
Ca_11159_v3 Cicer arietinum L. HOM05D001374 ORTHO05D004296 2.4e-68 262.3 159 75.5
PGR102G0253 Punica granatum HOM05D001374 ORTHO05D004296 3.1e-68 261.9 159 78.0
TAR371G0932 Trochodendron aralioides HOM05D001374 ORTHO05D004296 3.1e-68 261.9 156 78.2
CANSAT56G0741 Cannabis sativa HOM05D001374 ORTHO05D004296 4.1e-68 261.5 159 77.4
COL.COLO4_07078 Corchorus olitorius HOM05D001374 ORTHO05D004296 5.4e-68 261.2 159 78.0
C05p25160 Brassica napus HOM05D001374 ORTHO05D004296 9.1e-68 260.4 160 77.5
Oeu059498.1 Olea europaea HOM05D001374 ORTHO05D004296 9.1e-68 260.4 159 76.7
BcaC05g26473 Brassica carinata HOM05D001374 ORTHO05D004296 1.2e-67 260.0 159 77.4
ClCG11G004350 Citrullus lanatus HOM05D001374 ORTHO05D004296 1.2e-67 260.0 153 79.7
COL.COLO4_06769 Corchorus olitorius HOM05D001374 ORTHO05D004296 1.6e-67 259.6 159 77.4
Manes.06G066500 Manihot esculenta HOM05D001374 ORTHO05D004296 1.6e-67 259.6 159 76.1
THA.LOC104821915 Tarenaya hassleriana HOM05D001374 ORTHO05D004296 1.6e-67 259.6 158 76.6
TAR371G0884 Trochodendron aralioides HOM05D001374 ORTHO05D004296 1.6e-67 259.6 156 77.6
HanXRQChr12g0371141 Helianthus annuus HOM05D001374 ORTHO05D004296 2.0e-67 259.2 159 76.1
Medtr1g110430 Medicago truncatula HOM05D001374 ORTHO05D004296 2.0e-67 259.2 159 75.5
MELO3C020839.2 Cucumis melo HOM05D001374 ORTHO05D004296 2.7e-67 258.8 153 79.7
Nitab4.5_0001616g0020 Nicotiana tabacum HOM05D001374 ORTHO05D004296 2.7e-67 258.8 188 69.1
SalBow8G3975 Salvia bowleyana HOM05D001374 ORTHO05D004296 2.7e-67 258.8 159 77.4
Sed0001283 Sechium edule HOM05D001374 ORTHO05D004296 2.7e-67 258.8 153 79.1
BolC5t31249H Brassica oleracea HOM05D001374 ORTHO05D004296 4.5e-67 258.1 160 77.5
Eucgr.B03004 Eucalyptus grandis HOM05D001374 ORTHO05D004296 4.5e-67 258.1 160 78.1
Nitab4.5_0003867g0050 Nicotiana tabacum HOM05D001374 ORTHO05D004296 4.5e-67 258.1 188 69.1
Sp1g22870 Schrenkiella parvula HOM05D001374 ORTHO05D004296 4.5e-67 258.1 158 77.8
SEGI_13900 Sequoiadendron giganteum HOM05D001374 ORTHO05D004296 4.5e-67 258.1 155 74.2
CsaV3_2G016280 Cucumis sativus L. HOM05D001374 ORTHO05D004296 7.7e-67 257.3 153 77.8
AL1G39980 Arabidopsis lyrata HOM05D001374 ORTHO05D004296 1.0e-66 256.9 160 76.9
Sed0019956 Sechium edule HOM05D001374 ORTHO05D004296 1.0e-66 256.9 153 78.4
AT1G25350 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 1.3e-66 256.5 160 77.5
HanXRQChr16g0508691 Helianthus annuus HOM05D001374 ORTHO05D004296 1.3e-66 256.5 159 76.1
BcaC01g01691 Brassica carinata HOM05D001374 ORTHO05D004296 1.7e-66 256.1 160 76.2
Carub.0001s2516 Capsella rubella HOM05D001374 ORTHO05D004296 1.7e-66 256.1 160 76.9
Gorai.009G347600 Gossypium raimondii HOM05D001374 ORTHO05D004296 1.7e-66 256.1 159 76.1
Thhalv10006840m.g Eutrema salsugineum HOM05D001374 ORTHO05D004296 2.9e-66 255.4 160 76.2
Os01g0185200 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 2.9e-66 255.4 157 74.5
CARHR026140 Cardamine hirsuta HOM05D001374 ORTHO05D004296 5.0e-66 254.6 160 75.6
Migut.L01049 Erythranthe guttata HOM05D001374 ORTHO05D004296 5.0e-66 254.6 160 76.2
Os05g0182800 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 6.5e-66 254.2 157 73.9
BolC3t19594H Brassica oleracea HOM05D001374 ORTHO05D004296 8.5e-66 253.8 158 75.9
PSO063G7347 Papaver somniferum HOM05D001374 ORTHO05D004296 8.5e-66 253.8 156 74.4
unitig_22.g5575 Utricularia gibba HOM05D001374 ORTHO05D004296 1.1e-65 253.4 159 73.6
PSO782G3382 Papaver somniferum HOM05D001374 ORTHO05D004296 2.5e-65 252.3 156 74.4
Potri.008G122200 Populus trichocarpa HOM05D001374 ORTHO05D004296 2.5e-65 252.3 159 73.6
Zm00001eb121810 Zea mays HOM05D001374 ORTHO05D004296 3.2e-65 251.9 157 75.2
ECA233G2275 Erigeron canadensis HOM05D001374 ORTHO05D004296 4.2e-65 251.5 159 73.6
FvH4_4g27080 Fragaria vesca HOM05D001374 ORTHO05D004296 4.2e-65 251.5 160 76.2
FAN12G2409 Fragaria x ananassa HOM05D001374 ORTHO05D004296 4.2e-65 251.5 160 76.2
FAN12G3668 Fragaria x ananassa HOM05D001374 ORTHO05D004296 4.2e-65 251.5 160 76.2
FAN17G1418 Fragaria x ananassa HOM05D001374 ORTHO05D004296 4.2e-65 251.5 160 76.2
RcHm_v2.0_Chr6g0267171 Rosa chinensis HOM05D001374 ORTHO05D004296 1.2e-64 250.0 160 74.4
Zm00001eb337800 Zea mays HOM05D001374 ORTHO05D004296 1.2e-64 250.0 157 74.5
C03p72940 Brassica napus HOM05D001374 ORTHO05D004296 1.6e-64 249.6 160 74.4
vmacro10571 Vaccinium macrocarpon HOM05D001374 ORTHO05D004296 1.6e-64 249.6 159 74.8
FAN07G0461 Fragaria x ananassa HOM05D001374 ORTHO05D004296 2.1e-64 249.2 160 75.6
FAN22G1881 Fragaria x ananassa HOM05D001374 ORTHO05D004296 8.0e-64 247.3 160 75.0
Sabra08G0092800 Salix brachista HOM05D001374 ORTHO05D004296 8.0e-64 247.3 159 73.0
RcHm_v2.0_Chr4g0434881 Rosa chinensis HOM05D001374 ORTHO05D004296 1.0e-63 246.9 160 74.4
Sabra10G0093000 Salix brachista HOM05D001374 ORTHO05D004296 1.4e-63 246.5 157 73.2
TPR.G4913 Trifolium pratense HOM05D001374 ORTHO05D004296 5.2e-63 244.6 154 74.7
RcHm_v2.0_Chr1g0324801 Rosa chinensis HOM05D001374 ORTHO05D004296 6.8e-63 244.2 160 73.1
Atru.chr7.1031 Acer truncatum HOM05D001374 ORTHO05D004296 7.5e-62 240.7 157 74.5
Nn5g28146 Nelumbo nucifera HOM05D001374 ORTHO05D004296 2.8e-61 238.8 141 77.3
Carub.0003s3008 Capsella rubella HOM05D001374 ORTHO05D004296 1.4e-60 236.5 159 72.3
BcaB03g12025 Brassica carinata HOM05D001374 ORTHO05D004296 1.8e-60 236.1 153 73.9
BcaB03g12026 Brassica carinata HOM05D001374 ORTHO05D004296 1.8e-60 236.1 153 73.9
AL6G31240 Arabidopsis lyrata HOM05D001374 ORTHO05D004296 2.4e-60 235.7 159 69.8
Mapoly0039s0055 Marchantia polymorpha HOM05D001374 ORTHO05D004296 2.4e-60 235.7 155 72.3
Actinidia16665 Actinidia chinensis HOM05D001374 ORTHO05D004296 4.1e-60 235.0 159 71.7
Pp3c1_19680 Physcomitrium patens HOM05D001374 ORTHO05D004296 5.4e-60 234.6 153 69.9
SGA_v2.0_scaffold38G14957 Striga asiatica HOM05D001374 ORTHO05D004296 5.0e-58 228.0 160 71.2
TAR374G1395 Trochodendron aralioides HOM05D001374 ORTHO05D004296 1.1e-57 226.9 130 79.2
Lsat_1_v5_gn_2_80001 Lactuca sativa HOM05D001374 ORTHO05D004296 2.5e-57 225.7 159 69.2
Lsat_1_v5_gn_8_40760 Lactuca sativa HOM05D001374 ORTHO05D004296 9.5e-57 223.8 158 69.0
BraA08t34642Z Brassica rapa HOM05D001374 ORTHO05D004296 1.2e-54 216.9 154 69.5
Carub.0002s1482 Capsella rubella HOM05D001374 ORTHO05D004296 2.4e-52 209.1 158 62.7
SMO347G0322 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 1.5e-49 199.9 153 65.4
A08p26960 Brassica napus HOM05D001374 ORTHO05D004296 3.3e-49 198.7 135 71.1
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 9.8e-46 187.2 120 67.5
SGA_v2.0_scaffold32G13114 Striga asiatica HOM05D001374 ORTHO05D004296 9.2e-44 180.6 156 60.9
CDE07G1238 Ceratophyllum demersum HOM05D001374 ORTHO05D004296 1.6e-43 179.9 105 80.0
AT5G19720 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 1.0e-42 177.2 159 59.1
SMO361G0624 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 2.1e-40 169.5 151 57.6
unitig_24.g30583 Utricularia gibba HOM05D001374 ORTHO05D004296 2.1e-40 169.5 125 66.4
Cre14.g614900 Chlamydomonas reinhardtii HOM05D001374 ORTHO05D004296 6.2e-40 167.9 157 53.5
SMO361G0577 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 8.1e-40 167.5 151 57.0
PRCOL_00001723 Prasinoderma coloniale HOM05D001374 ORTHO05D004296 2.2e-37 159.5 155 52.3
Peaxi162Scf00753g00332 Petunia axillaris HOM05D001374 ORTHO05D004296 1.9e-36 156.4 89 82.0
Nn4g23889 Nelumbo nucifera HOM05D001374 ORTHO05D004296 1.7e-34 149.8 144 54.9
SalBow8G5161 Salvia bowleyana HOM05D001374 ORTHO05D004296 8.6e-34 147.5 84 81.0
Atru.chr11.140 Acer truncatum HOM05D001374 ORTHO05D004296 6.0e-27 124.8 67 82.1
CARHR061010 Cardamine hirsuta HOM05D001374 ORTHO05D004296 6.2e-24 114.8 76 68.4
Lalb_Chr21g0308841 Lupinus albus HOM05D001374 ORTHO05D004296 1.4e-23 113.6 133 48.9
Atru.chr11.139 Acer truncatum HOM05D001374 ORTHO05D004296 4.0e-23 112.1 80 67.5
MCO01G766 Micromonas commoda HOM05D001374 ORTHO05D004296 4.3e-17 92.0 173 35.8
AT1G68325 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 4.8e-16 88.6 73 56.2
Potri.010G122932 Populus trichocarpa HOM05D001374 ORTHO05D004296 3.1e-15 85.9 50 76.0
Haze_26608 Corylus avellana HOM05D001374 ORTHO05D004296 2.9e-13 79.3 154 33.8
Cfa026985 Carpinus fangiana HOM05D000278 ORTHO05D004673 6.4e-13 78.2 170 32.9
DCAR_007251 Daucus carota HOM05D001374 ORTHO05D004296 1.2e-11 73.9 71 59.2


User provided reference genes

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