Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.3e-185 652.9 330 100.0
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 3.7e-180 634.8 330 98.2
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 5.0e-161 571.2 331 87.9
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 2.0e-149 532.7 377 76.4
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 6.4e-148 527.7 337 81.3
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.1e-144 516.9 334 79.9
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 5.6e-144 514.6 331 80.4
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 4.0e-142 508.4 331 77.9
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 8.3e-140 500.7 330 76.4
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 2.4e-139 499.2 330 75.5
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 9.2e-139 497.3 333 78.1
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 1.6e-138 496.5 332 75.6
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 6.6e-137 491.1 333 75.7
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 1.9e-136 489.6 333 74.2
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 3.3e-136 488.8 335 74.3
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 5.6e-136 488.0 333 74.5
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 7.3e-136 487.6 337 75.4
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 2.1e-135 486.1 331 73.4
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 2.1e-135 486.1 333 73.6
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 3.6e-135 485.3 331 75.2
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 4.7e-135 485.0 339 74.9
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.7e-135 485.0 331 72.2
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 1.1e-134 483.8 338 75.4
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 1.8e-134 483.0 333 74.5
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 2.3e-134 482.6 333 73.6
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 3.1e-134 482.3 333 73.3
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 6.8e-134 481.1 334 74.3
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 8.9e-134 480.7 331 71.6
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.6e-133 479.2 332 71.4
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 2.6e-133 479.2 331 73.4
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 5.8e-133 478.0 330 72.1
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 7.5e-133 477.6 338 74.6
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 7.5e-133 477.6 334 73.4
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 2.2e-132 476.1 333 73.0
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 2.9e-132 475.7 334 73.4
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 6.4e-132 474.6 333 73.3
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 8.3e-132 474.2 331 73.1
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 5.4e-131 471.5 331 72.8
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 9.2e-131 470.7 334 74.0
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 1.2e-130 470.3 333 72.4
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 2.7e-130 469.2 330 71.5
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 3.5e-130 468.8 338 71.3
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 3.5e-130 468.8 333 71.2
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 1.0e-129 467.2 334 71.9
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.7e-129 466.5 332 72.3
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 5.1e-129 464.9 318 72.6
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 1.1e-128 463.8 333 71.5
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 1.5e-128 463.4 335 71.0
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 4.3e-128 461.8 334 71.0
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.2e-127 460.3 340 70.6
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.2e-127 460.3 340 70.6
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 6.2e-127 458.0 339 72.0
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 1.1e-126 457.2 337 70.9
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 3.1e-126 455.7 341 71.3
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 6.8e-126 454.5 334 71.3
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 1.2e-125 453.8 323 71.2
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.5e-125 453.4 333 69.4
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 1.5e-125 453.4 335 68.7
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 3.4e-125 452.2 335 69.6
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 3.4e-125 452.2 334 68.0
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 4.4e-125 451.8 335 69.6
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 5.8e-125 451.4 336 70.5
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 9.9e-125 450.7 336 70.8
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 1.3e-124 450.3 334 68.6
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 1.3e-124 450.3 336 68.2
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.7e-124 449.9 335 69.6
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 2.2e-124 449.5 336 70.5
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.9e-124 449.1 329 66.9
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.9e-124 449.1 332 69.3
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 1.4e-123 446.8 334 69.5
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.9e-123 446.4 338 70.7
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 1.9e-123 446.4 336 70.2
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 3.2e-123 445.7 334 68.0
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.4e-123 444.9 336 69.0
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 2.7e-122 442.6 345 68.7
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 3.5e-122 442.2 332 69.6
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 4.6e-122 441.8 335 69.3
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 5.1e-121 438.3 329 66.0
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 6.6e-121 438.0 335 67.2
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 8.7e-121 437.6 335 68.4
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 9.6e-120 434.1 342 67.8
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 1.6e-119 433.3 330 66.7
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 1.6e-119 433.3 339 67.0
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 1.6e-119 433.3 336 67.0
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 2.8e-119 432.6 333 67.0
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 6.2e-119 431.4 330 67.6
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 6.2e-119 431.4 330 67.6
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 6.2e-119 431.4 324 68.2
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 2.4e-118 429.5 336 65.5
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 1.5e-117 426.8 334 67.4
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.0e-117 426.4 329 65.0
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 7.6e-117 424.5 337 66.8
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 1.7e-116 423.3 339 68.1
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.7e-116 423.3 340 66.8
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.7e-116 423.3 333 67.3
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 4.9e-116 421.8 333 64.9
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.9e-115 419.9 354 63.3
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 2.7e-114 416.0 339 65.2
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.7e-113 413.3 354 63.6
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.7e-113 413.3 354 63.6
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 3.0e-113 412.5 340 64.7
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.1e-107 394.0 355 62.0
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 1.9e-107 393.3 262 74.8
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 1.8e-105 386.7 333 62.5
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 3.9e-105 385.6 334 61.7
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 8.1e-103 377.9 351 59.0
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 1.8e-102 376.7 340 57.6
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 2.4e-102 376.3 357 60.8
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 5.3e-102 375.2 351 58.4
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 2.5e-99 366.3 359 59.1
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 3.2e-99 365.9 329 59.3
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 5.5e-99 365.2 284 69.0
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 4.6e-98 362.1 342 58.8
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.5e-96 357.1 335 57.6
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 1.8e-86 323.6 322 57.8
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 3.4e-85 319.3 322 55.3
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.5e-83 313.2 228 69.7
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.4e-75 287.3 245 65.7
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 5.1e-73 278.9 210 70.0
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 4.1e-70 269.2 351 46.4
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 5.5e-67 258.8 255 58.0
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 6.1e-66 255.4 188 71.3
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.8e-65 253.8 273 57.9
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 1.7e-63 247.3 185 69.7
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 3.8e-60 236.1 357 42.6
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 7.2e-59 231.9 380 41.8
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.0e-57 228.0 346 41.9
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 7.7e-53 211.8 351 42.7
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.7e-52 210.7 215 54.9
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 5.0e-52 209.1 353 40.5
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 2.8e-47 193.4 226 52.7
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 2.0e-45 187.2 366 37.2
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 4.2e-43 179.5 176 52.3
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.2e-34 151.4 373 32.7
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 4.4e-32 142.9 357 34.2
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 4.1e-30 136.3 116 64.7
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 3.0e-28 130.2 363 32.0
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 2.3e-25 120.6 146 45.2
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 1.1e-22 111.7 124 49.2
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 1.1e-22 111.7 106 52.8
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.7e-20 104.4 85 61.2
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 2.3e-20 104.0 81 56.8
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.9e-19 100.9 101 54.5
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 2.5e-19 100.5 81 55.6
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 2.5e-19 100.5 125 47.2
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 7.6e-16 89.0 148 33.8
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 3.2e-14 83.6 55 70.9
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 1.7e-12 77.8 41 82.9
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 1.1e-11 75.1 334 25.4
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.1e-11 75.1 81 56.8
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.5e-11 74.7 84 50.0
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 2.5e-11 73.9 61 55.7
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 4.7e-10 69.7 171 26.9
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.2e-08 65.1 119 36.1
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.3e-07 61.6 53 52.8


User provided reference genes

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