Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 2.4e-298 1028.1 519 100.0
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.3e-139 500.7 263 98.1
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 2.6e-135 486.5 342 75.7
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 3.5e-132 476.1 292 84.6
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 1.1e-125 454.5 292 81.5
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 2.4e-125 453.4 294 80.6
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 4.1e-125 452.6 289 82.7
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 7.0e-125 451.8 293 80.9
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 7.0e-125 451.8 292 81.5
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 2.0e-124 450.3 294 79.9
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 2.7e-124 449.9 296 79.7
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.7e-124 449.9 293 80.5
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 2.7e-124 449.9 294 79.9
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 2.7e-124 449.9 294 80.3
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 4.5e-124 449.1 294 79.9
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 7.7e-124 448.4 296 79.4
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 1.3e-123 447.6 294 79.6
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.3e-123 447.6 263 86.7
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 1.7e-123 447.2 298 78.2
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 2.9e-123 446.4 298 79.9
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 1.5e-122 444.1 298 77.5
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.5e-122 444.1 290 78.6
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 3.2e-122 443.0 298 77.5
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 5.5e-122 442.2 298 76.8
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 7.2e-122 441.8 298 77.2
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 7.2e-122 441.8 298 77.2
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 9.4e-122 441.4 298 77.9
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 1.2e-121 441.0 290 79.0
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.1e-121 440.3 298 77.2
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.1e-121 440.3 298 77.2
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 2.7e-121 439.9 295 77.3
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 2.7e-121 439.9 293 77.8
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 1.0e-120 438.0 294 77.6
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 2.3e-120 436.8 299 75.6
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 2.3e-120 436.8 294 76.9
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 2.3e-120 436.8 298 76.8
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 3.0e-120 436.4 298 76.5
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 3.0e-120 436.4 298 76.5
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 3.0e-120 436.4 298 76.5
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 4.0e-120 436.0 298 76.5
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 4.0e-120 436.0 292 78.8
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 5.2e-120 435.6 292 76.7
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 6.8e-120 435.3 293 76.5
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 1.2e-119 434.5 292 77.4
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 1.2e-119 434.5 293 76.5
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 1.2e-119 434.5 292 76.7
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 1.2e-119 434.5 298 75.5
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 1.5e-119 434.1 290 76.6
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 3.4e-119 433.0 296 76.0
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.4e-119 432.6 292 77.7
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 4.4e-119 432.6 292 77.7
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 5.7e-119 432.2 298 75.5
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 1.3e-118 431.0 297 77.1
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 1.7e-118 430.6 295 76.3
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 4.8e-118 429.1 295 74.9
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 8.3e-118 428.3 294 75.2
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 8.3e-118 428.3 296 74.3
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 1.4e-117 427.6 297 75.8
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.4e-117 427.6 295 75.9
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 1.4e-117 427.6 302 72.8
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.4e-117 427.6 289 76.1
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 1.8e-117 427.2 295 75.6
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 1.8e-117 427.2 295 75.6
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.8e-117 427.2 292 77.4
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 5.4e-117 425.6 296 74.0
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 5.4e-117 425.6 294 75.5
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 7.0e-117 425.2 296 73.6
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 7.0e-117 425.2 295 73.9
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 7.0e-117 425.2 297 75.4
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 9.1e-117 424.9 296 73.6
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 1.2e-116 424.5 302 72.2
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 3.5e-116 422.9 294 75.2
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 3.5e-116 422.9 294 75.2
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.3e-115 421.0 291 74.6
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 1.3e-115 421.0 294 73.5
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.7e-115 420.6 294 74.5
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 2.2e-115 420.2 294 74.5
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 2.9e-115 419.9 297 73.4
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 6.5e-115 418.7 263 84.0
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 1.1e-114 417.9 286 75.5
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 1.9e-114 417.2 299 71.2
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 4.2e-114 416.0 302 71.5
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 5.5e-114 415.6 295 72.5
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 1.6e-113 414.1 294 72.4
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 1.6e-113 414.1 295 74.2
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.6e-113 414.1 295 74.2
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.6e-113 414.1 295 74.2
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 2.7e-113 413.3 299 70.6
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 4.7e-113 412.5 295 73.2
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 1.4e-112 411.0 299 70.2
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 1.4e-112 411.0 283 76.0
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 1.8e-112 410.6 299 69.9
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.8e-112 410.6 295 73.9
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.3e-112 410.2 294 73.1
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 8.8e-112 408.3 288 73.6
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 1.2e-111 407.9 293 72.4
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.2e-111 407.9 294 72.8
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 4.4e-111 406.0 293 71.7
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 5.7e-111 405.6 293 71.0
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.7e-110 404.1 291 71.5
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 3.7e-110 402.9 296 70.6
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 6.3e-110 402.1 296 71.3
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 8.3e-110 401.7 298 69.8
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 1.4e-109 401.0 297 69.7
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 1.4e-109 401.0 297 69.7
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 1.4e-109 401.0 297 69.7
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 1.8e-109 400.6 298 69.5
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 2.0e-108 397.1 297 69.4
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 5.9e-108 395.6 295 71.2
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 6.8e-104 382.1 304 65.8
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 1.2e-100 371.3 286 68.5
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.0e-100 370.5 278 71.9
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 2.7e-100 370.2 288 66.7
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 8.6e-99 365.2 258 75.6
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.7e-94 350.9 287 64.1
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 5.4e-93 345.9 299 64.2
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 3.3e-90 336.7 317 57.4
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.4e-88 331.3 195 82.6
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 5.8e-87 325.9 293 56.7
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.7e-86 323.2 231 73.2
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 5.6e-82 309.3 277 59.2
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 3.6e-81 306.6 264 64.4
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 4.0e-80 303.1 217 73.3
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.2e-79 301.6 263 58.9
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 2.2e-78 297.4 263 65.4
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 2.2e-70 270.8 271 55.0
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.5e-66 258.1 134 94.8
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.8e-59 234.6 271 51.7
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.1e-58 231.9 185 69.7
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 1.2e-52 211.8 180 62.8
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 5.1e-51 206.5 196 56.6
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 3.3e-50 203.8 256 50.4
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 1.6e-49 201.4 301 43.9
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 3.4e-47 193.7 160 65.6
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 9.3e-45 185.7 171 62.0
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.6e-44 183.3 158 64.6
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 3.3e-42 177.2 198 50.0
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 2.1e-41 174.5 214 49.5
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 5.0e-38 163.3 111 75.7
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 4.6e-36 156.8 105 70.5
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 2.0e-31 141.4 175 46.9
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 2.0e-31 141.4 105 65.7
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 1.0e-27 129.0 211 42.7
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 2.6e-23 114.4 80 70.0
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 1.3e-22 112.1 80 67.5
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 2.2e-22 111.3 127 55.1
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.4e-21 108.6 267 34.5
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 2.5e-21 107.8 267 34.1
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 2.7e-20 104.4 61 77.0
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 7.4e-18 96.3 64 70.3
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 2.9e-14 84.3 112 42.9
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 1.5e-13 82.0 104 48.1
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 7.2e-13 79.7 68 55.9
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 1.4e-11 75.5 122 45.1
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 2.2e-09 68.2 64 65.6
AUR62026202 Chenopodium quinoa HOM05D004334 ORTHO05D004763 1.1e-08 65.9 52 57.7
AUR62042102 Chenopodium quinoa HOM05D002784 ORTHO05D003113 3.8e-06 57.4 49 57.1
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 3.8e-06 57.4 76 52.6
AUR62042776 Chenopodium quinoa HOM05D009516 ORTHO05D010476 5.0e-06 57.0 49 55.1
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 6.5e-06 56.6 78 43.6


User provided reference genes

Program Settings