Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 0.0e+00 1607.8 831 100.0
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 0.0e+00 1275.4 707 92.2
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 1.1e-311 1072.8 726 75.3
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 2.8e-293 1011.9 726 73.3
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 2.0e-251 872.8 695 67.8
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 1.0e-247 860.5 768 60.5
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 6.8e-239 831.2 730 61.1
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 2.6e-238 829.3 730 61.0
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 5.7e-238 828.2 730 60.8
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 4.9e-237 825.1 708 61.7
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 3.1e-236 822.4 727 60.5
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 3.1e-236 822.4 733 61.9
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 1.6e-235 820.1 730 61.2
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 2.7e-235 819.3 725 60.1
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 3.8e-234 815.5 732 60.1
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 1.1e-233 813.9 727 60.7
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 1.9e-233 813.1 738 59.5
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 2.5e-233 812.8 725 60.7
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 9.5e-233 810.8 727 61.1
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 1.2e-232 810.4 726 59.0
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 1.2e-232 810.4 699 62.5
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 1.2e-232 810.4 729 59.0
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 2.1e-232 809.7 732 60.1
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 3.6e-232 808.9 743 59.5
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 4.7e-232 808.5 721 59.4
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 6.1e-232 808.1 718 59.9
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 8.0e-232 807.7 733 59.9
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 5.2e-231 805.1 720 59.2
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 5.2e-231 805.1 732 58.7
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 8.9e-231 804.3 728 60.0
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 8.9e-231 804.3 715 59.2
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 8.9e-231 804.3 728 60.7
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 1.2e-230 803.9 684 63.3
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 2.9e-229 799.3 743 57.2
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 3.7e-229 798.9 712 58.8
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 3.7e-229 798.9 712 58.8
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 4.9e-229 798.5 711 59.1
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 8.3e-229 797.7 745 58.4
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.2e-227 793.9 752 58.4
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 1.2e-227 793.9 740 58.4
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 1.2e-227 793.9 728 60.7
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 1.6e-227 793.5 722 60.5
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.5e-227 792.3 750 58.1
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 5.9e-227 791.6 718 58.5
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 5.9e-227 791.6 734 58.3
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 7.8e-227 791.2 714 59.4
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 7.8e-227 791.2 722 60.2
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 1.3e-226 790.4 695 60.9
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 1.7e-226 790.0 718 58.6
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.7e-226 790.0 723 58.6
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 3.0e-226 789.3 726 57.7
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 1.0e-223 780.8 745 58.3
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 1.4e-223 780.4 730 58.2
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 8.9e-223 777.7 797 54.2
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 1.5e-222 776.9 716 57.8
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.0e-222 776.5 733 57.8
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 8.3e-221 771.2 691 59.5
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 8.3e-221 771.2 707 58.1
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 1.4e-220 770.4 702 59.3
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 1.4e-220 770.4 716 58.4
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 1.7e-218 763.5 736 56.8
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 3.0e-218 762.7 708 58.3
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 6.6e-218 761.5 699 57.7
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 1.5e-217 760.4 695 58.3
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 7.3e-217 758.1 711 57.0
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 1.5e-214 750.4 712 56.6
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 3.4e-214 749.2 696 58.0
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 4.9e-213 745.3 712 56.0
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 2.4e-212 743.0 709 56.3
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 4.1e-212 742.3 708 55.8
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 1.2e-211 740.7 706 57.1
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 1.6e-211 740.3 709 55.7
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 1.7e-210 736.9 707 55.6
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.0e-210 736.1 687 56.0
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 2.5e-209 733.0 738 54.2
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 9.5e-209 731.1 694 56.5
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 2.1e-208 729.9 727 55.4
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 1.4e-207 727.2 728 54.8
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 2.3e-207 726.5 702 55.8
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 7.6e-206 721.5 660 58.9
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 4.9e-205 718.8 709 54.2
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 4.9e-205 718.8 699 54.8
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.1e-204 717.6 699 54.6
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 6.2e-200 701.8 727 53.4
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 5.2e-199 698.7 984 44.1
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 9.3e-196 688.0 712 53.8
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 6.0e-195 685.3 732 50.1
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 1.3e-194 684.1 831 46.8
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 1.2e-187 661.0 709 51.8
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 3.0e-186 656.4 672 52.8
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 3.9e-186 656.0 937 43.5
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 3.7e-184 649.4 725 53.4
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 1.8e-183 647.1 645 56.0
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 7.6e-182 641.7 761 49.3
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 2.8e-176 623.2 561 59.7
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 1.8e-175 620.5 580 58.4
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 5.5e-164 582.4 700 46.7
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 7.4e-161 572.0 623 53.9
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 7.9e-155 552.0 567 54.7
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 3.8e-149 533.1 436 64.0
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 3.1e-143 513.5 745 42.3
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 3.5e-142 510.0 757 41.1
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 2.7e-134 483.8 733 40.8
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 4.3e-108 396.7 348 56.6
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.0e-106 390.2 501 44.1
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 6.8e-106 389.4 364 54.9
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 2.0e-105 387.9 481 45.3
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 9.5e-100 369.0 485 43.9
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.1e-95 353.6 488 42.6
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 1.8e-82 311.6 325 52.6
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 4.9e-80 303.5 336 55.1
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 6.0e-78 296.6 727 31.9
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 4.8e-75 287.0 1018 26.1
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.4e-74 284.6 276 59.8
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.8e-73 280.0 274 57.7
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 1.1e-63 249.2 180 67.2
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 5.6e-60 236.9 288 50.7
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 1.9e-55 221.9 160 66.2
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 3.2e-55 221.1 237 56.1
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.2e-55 220.7 301 40.2
AUR62030463 Chenopodium quinoa HOM05D020934 ORTHO05D000594 2.5e-44 184.9 184 56.5
AUR62010450 Chenopodium quinoa HOM05D020934 ORTHO05D000594 2.2e-43 181.8 137 70.1
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 5.3e-42 177.2 697 25.8
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 4.2e-39 167.5 122 63.9
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 1.2e-38 166.0 338 35.2
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 2.1e-38 165.2 124 62.9
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 3.1e-34 151.4 147 55.1
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 1.9e-31 142.1 176 49.4
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 2.0e-28 132.1 170 45.3
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 2.0e-25 122.1 101 66.3
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.9e-25 120.6 100 60.0
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 2.5e-23 115.2 295 35.9
AUR62030464 Chenopodium quinoa HOM05D020934 ORTHO05D000594 1.8e-21 109.0 75 77.3
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 6.3e-19 100.5 180 35.0
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 9.1e-18 96.7 101 48.5
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 2.9e-16 91.7 64 68.8
EL10Ac6g15410 Beta vulgaris HOM05D020934 ORTHO05D000594 1.2e-12 79.7 128 39.8
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 2.6e-12 78.6 155 33.5
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 1.1e-10 73.2 67 50.7
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 1.3e-08 66.2 97 38.1
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 2.3e-08 65.5 58 56.9
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 1.1e-07 63.2 155 24.5
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.2e-06 59.7 173 29.5
Aa31sc1955G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 1.6e-06 59.3 41 61.0
Aa31sc2119G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 1.6e-06 59.3 41 61.0
Glyma.02G291400 Glycine max HOM05D000896 ORTHO05D000594 4.7e-06 57.8 197 27.9


User provided reference genes

Program Settings