Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 0.0e+00 2192.9 1121 100.0
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 0.0e+00 2013.0 1110 93.0
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 0.0e+00 1677.5 1112 78.3
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 0.0e+00 1235.3 1042 63.6
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 0.0e+00 1231.1 1148 58.4
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 8.1e-296 1020.8 1134 52.6
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 2.4e-295 1019.2 1134 51.9
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 1.5e-294 1016.5 1119 53.9
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 1.2e-291 1006.9 1137 52.6
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 3.9e-290 1001.9 1146 50.2
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 2.4e-287 992.6 1165 50.0
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 5.1e-282 974.9 1127 50.5
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 1.6e-280 969.9 1131 49.7
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 4.8e-280 968.4 1133 48.3
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 1.4e-279 966.8 1165 50.1
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 8.5e-277 957.6 1158 49.5
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 1.9e-276 956.4 1145 51.6
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 2.7e-275 952.6 1162 47.4
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 2.0e-270 936.4 1159 49.2
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 2.6e-270 936.0 1194 48.4
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 9.4e-268 927.5 1217 46.2
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 2.1e-267 926.4 1161 49.4
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 4.4e-265 918.7 1145 48.0
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 6.9e-263 911.4 1141 49.2
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 6.9e-263 911.4 1156 50.1
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 2.9e-261 906.0 1132 48.2
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 3.0e-258 896.0 1140 48.2
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 3.0e-258 896.0 1230 46.0
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 3.9e-258 895.6 1144 48.8
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 1.1e-257 894.0 1156 47.2
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 6.3e-256 888.3 1158 46.3
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 4.1e-255 885.6 1064 49.6
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 4.1e-255 885.6 1243 45.1
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 5.3e-255 885.2 1170 46.9
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 7.0e-255 884.8 1190 44.5
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 7.0e-255 884.8 1063 50.5
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 2.6e-254 882.9 990 49.7
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 1.0e-253 880.9 1185 44.1
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.3e-253 880.6 990 49.6
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 5.0e-253 878.6 1187 45.1
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 3.1e-247 859.4 1174 44.6
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 4.1e-247 859.0 1188 43.9
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.2e-246 857.4 1180 45.6
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.6e-246 857.1 1166 44.9
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 3.5e-246 855.9 1169 44.7
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 2.9e-245 852.8 1240 43.7
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.1e-244 850.9 1227 43.3
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 1.1e-244 850.9 1098 46.4
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.6e-243 847.0 1159 46.6
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 6.1e-243 845.1 1145 43.3
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 4.0e-242 842.4 1264 41.8
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 1.5e-241 840.5 1115 44.6
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 3.4e-241 839.3 1179 43.4
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 1.4e-239 833.9 1146 44.8
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 1.8e-239 833.6 1242 43.0
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 5.4e-239 832.0 1180 44.2
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.3e-237 827.4 1203 43.8
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 1.7e-237 827.0 1154 43.8
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 2.3e-237 826.6 1123 44.4
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 3.8e-237 825.9 1142 43.8
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 4.7e-235 818.9 1299 40.3
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 6.8e-234 815.1 1220 41.4
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 3.4e-233 812.8 1139 42.9
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 4.4e-233 812.4 1272 40.3
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 5.7e-233 812.0 1105 44.3
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 5.7e-233 812.0 1254 42.2
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 1.8e-231 807.0 1100 45.3
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 5.4e-231 805.4 1164 42.6
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 7.0e-231 805.1 1179 44.4
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 1.2e-230 804.3 1100 45.0
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 6.6e-229 798.5 1189 43.3
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 1.9e-228 797.0 1248 41.6
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 2.5e-228 796.6 1145 44.3
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 4.7e-227 792.3 1171 42.5
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 1.4e-226 790.8 1068 44.9
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 2.0e-225 786.9 1054 44.4
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 5.7e-225 785.4 1167 43.1
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 2.9e-224 783.1 1158 43.4
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 8.3e-224 781.6 1167 43.0
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 2.0e-222 776.9 1253 41.8
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 5.6e-220 768.8 1146 41.7
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 1.6e-219 767.3 1133 42.0
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.1e-218 763.1 1220 40.6
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 5.2e-218 762.3 1134 42.1
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 2.2e-216 756.9 1102 42.4
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 3.2e-215 753.1 1156 43.0
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 3.2e-215 753.1 1156 43.0
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 1.0e-213 748.0 1160 40.8
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 3.3e-212 743.0 646 57.9
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 5.6e-212 742.3 1154 40.6
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 3.1e-210 736.5 1264 39.4
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 3.0e-205 719.9 686 54.1
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 1.1e-204 718.0 1137 40.4
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 6.2e-203 712.2 1107 41.4
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 3.2e-199 699.9 907 44.8
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 6.6e-197 692.2 904 46.7
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 6.2e-195 685.6 1150 39.3
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 5.2e-194 682.6 629 56.8
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 9.0e-194 681.8 888 47.5
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 2.4e-191 673.7 1060 42.9
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 6.2e-187 659.1 992 41.4
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 2.6e-185 653.7 656 52.1
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 2.0e-169 600.9 1108 39.9
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 1.7e-168 597.8 757 46.6
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.1e-162 577.0 963 38.2
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 6.9e-162 575.9 639 50.2
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.1e-138 497.3 432 58.6
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.3e-136 491.9 512 52.3
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 6.5e-136 489.6 822 40.4
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 2.5e-135 487.6 764 41.9
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 8.8e-133 479.2 771 39.9
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 4.7e-126 456.8 800 39.4
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 3.3e-111 407.5 696 35.9
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 4.7e-110 403.7 679 36.8
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 2.2e-107 394.8 1056 32.4
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 6.4e-91 340.1 343 51.6
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.6e-89 335.5 690 35.4
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 1.1e-87 329.3 303 54.5
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 6.2e-86 323.6 742 36.4
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 8.9e-85 319.7 312 54.2
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 3.3e-79 301.2 976 28.7
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 1.2e-78 299.3 265 54.0
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 2.8e-78 298.1 974 28.3
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 4.7e-78 297.4 294 51.7
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 1.8e-61 242.3 415 34.0
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.4e-60 238.0 353 39.9
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 3.2e-58 231.5 475 41.1
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.8e-48 199.1 270 44.8
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 1.1e-29 136.7 468 28.8
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 3.2e-26 125.2 228 36.4
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 9.4e-26 123.6 611 27.8
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 6.7e-24 117.5 268 32.1
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 1.5e-23 116.3 293 25.3
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 3.7e-06 58.5 59 44.1


User provided reference genes

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