Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 0.0e+00 1470.7 748 100.0
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 0.0e+00 1270.8 707 92.2
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 0.0e+00 1162.9 768 77.0
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 0.0e+00 1095.9 756 75.5
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 9.6e-277 956.8 714 69.6
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 1.0e-273 946.8 762 65.4
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 2.1e-263 912.5 774 63.8
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 4.6e-263 911.4 774 62.3
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 6.1e-263 911.0 770 63.0
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 3.0e-262 908.7 770 62.9
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 5.1e-262 907.9 765 62.7
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 1.1e-261 906.7 764 62.7
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 1.4e-259 899.8 769 61.6
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 4.1e-259 898.3 762 63.8
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 9.0e-259 897.1 766 63.3
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 2.0e-258 896.0 758 63.5
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 1.0e-257 893.6 758 63.1
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 1.7e-257 892.9 766 61.1
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 2.9e-257 892.1 766 62.8
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 6.5e-257 891.0 754 62.2
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 8.5e-257 890.6 725 64.4
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 5.5e-256 887.9 741 63.3
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 7.2e-256 887.5 759 61.5
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 7.2e-256 887.5 762 62.3
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 7.2e-256 887.5 747 61.8
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 4.6e-255 884.8 758 61.1
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 4.6e-255 884.8 758 62.4
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 3.0e-254 882.1 763 61.7
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 3.9e-254 881.7 758 60.6
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 5.1e-254 881.3 767 60.6
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 5.1e-254 881.3 768 61.1
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 1.5e-253 879.8 757 61.4
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 2.5e-253 879.0 728 63.2
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 9.7e-253 877.1 751 61.3
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 9.7e-253 877.1 751 61.3
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 9.7e-253 877.1 729 63.5
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 2.2e-252 875.9 783 59.6
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 8.2e-252 874.0 745 61.5
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 1.4e-251 873.2 760 60.7
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 1.4e-251 873.2 760 62.0
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 1.8e-251 872.8 751 61.7
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 3.1e-251 872.1 759 60.5
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 4.1e-251 871.7 758 60.4
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 7.7e-250 867.5 761 60.3
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.0e-249 867.1 777 60.1
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 1.3e-249 866.7 738 61.0
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 3.8e-249 865.1 747 61.0
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 5.0e-249 864.8 751 61.3
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 8.5e-249 864.0 749 61.0
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.1e-248 863.6 754 60.6
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.2e-248 862.1 770 59.7
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 1.0e-246 857.1 761 59.7
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 3.0e-246 855.5 735 61.5
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 6.7e-246 854.4 787 57.8
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 9.7e-245 850.5 744 61.7
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 1.3e-244 850.1 828 55.8
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 1.3e-244 850.1 726 61.7
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 1.7e-244 849.7 763 59.1
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 1.7e-241 839.7 729 60.4
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 2.2e-241 839.3 777 58.2
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 2.9e-241 839.0 743 59.2
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.9e-241 839.0 764 58.8
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 3.8e-241 838.6 741 59.4
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 1.9e-240 836.3 743 59.4
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 7.2e-240 834.3 747 59.8
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 3.1e-235 818.9 748 58.0
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 4.1e-235 818.5 743 58.5
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 4.1e-235 818.5 738 58.4
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 1.2e-234 817.0 728 58.1
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.7e-234 814.3 720 58.8
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 5.0e-233 811.6 733 57.6
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 1.5e-232 810.1 727 58.2
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 1.4e-230 803.5 733 57.0
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 4.0e-230 802.0 730 58.1
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 2.0e-229 799.7 727 58.5
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 8.3e-228 794.3 771 55.5
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 7.0e-227 791.2 737 56.4
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 2.0e-226 789.6 719 58.1
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 4.5e-226 788.5 723 57.8
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 5.9e-226 788.1 723 57.8
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 5.7e-221 771.5 998 46.2
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 4.1e-219 765.4 764 55.0
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 1.2e-218 763.8 749 55.5
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.6e-218 763.5 733 55.3
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 2.7e-218 762.7 733 55.1
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 2.3e-214 749.6 867 48.2
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 9.8e-213 744.2 754 52.1
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 3.2e-211 739.2 662 60.7
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 8.0e-207 724.5 714 55.2
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 4.0e-206 722.2 722 54.0
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 5.8e-205 718.4 754 55.6
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 1.3e-204 717.2 959 46.2
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 1.4e-203 713.8 649 59.6
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 4.7e-199 698.7 610 61.8
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 6.8e-198 694.9 762 51.0
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 4.2e-179 632.5 556 60.4
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 3.1e-174 616.3 608 56.1
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 4.0e-174 615.9 711 47.4
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 3.5e-170 602.8 480 65.2
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 4.3e-168 595.9 620 55.6
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 1.3e-153 547.7 797 41.7
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 8.7e-153 545.0 755 43.0
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 4.3e-152 542.7 753 43.2
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 5.7e-128 462.6 386 60.1
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 6.5e-124 449.1 393 57.5
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.7e-111 406.8 466 47.9
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 5.2e-105 386.3 499 44.1
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.4e-102 377.5 480 45.2
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.8e-100 370.2 488 44.5
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 1.1e-91 342.0 717 34.3
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 1.3e-84 318.5 325 53.8
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.1e-81 307.4 336 55.4
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 1.3e-76 292.0 1018 25.3
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.0e-76 290.8 276 60.9
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.1e-73 280.8 274 56.9
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 4.3e-67 260.4 183 68.9
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 7.8e-61 239.6 285 51.9
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 9.0e-57 226.1 160 68.8
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 1.2e-56 225.7 241 56.0
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.6e-56 224.6 300 41.0
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 7.6e-56 223.0 357 41.2
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 2.7e-53 214.5 158 63.3
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 5.3e-49 200.3 718 27.9
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 7.9e-45 186.4 164 56.1
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 1.1e-38 166.0 124 62.9
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 1.7e-31 142.1 176 48.9
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 3.6e-29 134.4 160 47.5
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.2e-24 119.4 100 60.0
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 2.6e-24 118.2 122 56.6
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 6.5e-23 113.6 295 36.3
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 2.1e-21 108.6 201 33.3
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.1e-17 96.3 124 44.4
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 3.1e-17 94.7 64 70.3
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 3.0e-12 78.2 120 35.0
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 2.6e-11 75.1 78 47.4
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 4.4e-11 74.3 161 31.1
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 8.2e-10 70.1 54 59.3
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 2.0e-08 65.5 189 29.6
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 5.9e-08 63.9 171 25.7
Aa31sc1955G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 1.5e-06 59.3 50 54.0
Aa31sc2119G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 1.5e-06 59.3 50 54.0


User provided reference genes

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