Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029968 Chenopodium quinoa HOM05D000113 ORTHO05D012125 1.8e-83 312.8 185 100.0
Haze_07691 Corylus avellana HOM05D000113 ORTHO05D002571 5.3e-35 151.8 125 70.4
Cfa019308 Carpinus fangiana HOM05D000113 ORTHO05D002571 4.5e-34 148.7 125 67.2
TAR374G0746 Trochodendron aralioides HOM05D000113 ORTHO05D002571 1.4e-32 143.7 116 65.5
Sc10g0009750 Simmondsia chinensis HOM05D000113 ORTHO05D002571 5.5e-32 141.7 102 68.6
EL10Ac3g06248 Beta vulgaris HOM05D000113 ORTHO05D002571 1.0e-30 137.5 79 86.1
Manes.13G073000 Manihot esculenta HOM05D000113 ORTHO05D002571 5.2e-30 135.2 127 58.3
Dinv38794 Davidia involucrata HOM05D000113 ORTHO05D002571 1.1e-29 134.0 111 64.0
GSVIVG01007911001 Vitis vinifera HOM05D000113 ORTHO05D002571 3.3e-29 132.5 82 78.0
Eucgr.K02504 Eucalyptus grandis HOM05D000113 ORTHO05D012125 4.4e-29 132.1 131 58.0
Prupe.5G201700 Prunus persica HOM05D000113 ORTHO05D002571 4.4e-29 132.1 79 84.8
Actinidia35027 Actinidia chinensis HOM05D000113 ORTHO05D002571 1.1e-27 127.5 82 76.8
Prupe.6G159800 Prunus persica HOM05D000113 ORTHO05D002571 1.4e-27 127.1 81 82.7
Hma1.2p1_0060F.1_g033270 Hydrangea macrophylla HOM05D000113 ORTHO05D002571 1.8e-27 126.7 79 79.7
CiPaw.11G050600 Carya illinoinensis HOM05D000113 ORTHO05D002571 3.1e-27 125.9 79 79.7
PGR044G1093 Punica granatum HOM05D000113 ORTHO05D002571 3.1e-27 125.9 79 78.5
Rhsim12G0152100 Rhododendron simsii HOM05D000113 ORTHO05D002571 1.2e-26 124.0 79 77.2
MELO3C017216.2 Cucumis melo HOM05D000113 ORTHO05D002571 2.6e-26 122.9 110 63.6
Gohir.A12G181200 Gossypium hirsutum HOM05D000113 ORTHO05D002571 2.6e-26 122.9 115 56.5
Gohir.D12G183900 Gossypium hirsutum HOM05D000113 ORTHO05D002571 4.5e-26 122.1 119 53.8
CsaV3_1G002800 Cucumis sativus L. HOM05D000113 ORTHO05D002571 5.9e-26 121.7 113 62.8
CSS0000469 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 7.7e-26 121.3 76 78.9
SGA_v2.0_scaffold1221G53867 Striga asiatica HOM05D000113 ORTHO05D012125 7.7e-26 121.3 116 56.0
Gorai.008G197200 Gossypium raimondii HOM05D000113 ORTHO05D002571 1.0e-25 120.9 116 55.2
Nn2g13470 Nelumbo nucifera HOM05D000113 ORTHO05D002571 1.0e-25 120.9 79 74.7
Duzib205G1857 Durio zibethinus HOM05D000113 ORTHO05D002571 1.3e-25 120.6 122 55.7
vmacro16510 Vaccinium macrocarpon HOM05D000113 ORTHO05D002571 1.3e-25 120.6 83 72.3
MD06G1200100 Malus domestica HOM05D000113 ORTHO05D002571 3.8e-25 119.0 78 76.9
Glyma.06G201700 Glycine max HOM05D000113 ORTHO05D002571 5.0e-25 118.6 79 75.9
AT1G32490 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 8.5e-25 117.9 117 56.4
Lj1g0013131 Lotus japonicus HOM05D000113 ORTHO05D002571 8.5e-25 117.9 119 58.8
Phvul.009G193400 Phaseolus vulgaris HOM05D000113 ORTHO05D002571 8.5e-25 117.9 79 75.9
Thecc.03G097900 Theobroma cacao HOM05D000113 ORTHO05D002571 8.5e-25 117.9 82 72.0
PSO013G0399 Papaver somniferum HOM05D000113 ORTHO05D012125 1.1e-24 117.5 116 56.0
PSO063G4203 Papaver somniferum HOM05D000113 ORTHO05D002571 1.1e-24 117.5 117 54.7
TWI73G0006 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 1.1e-24 117.5 123 51.2
unitig_8.g2956 Utricularia gibba HOM05D000113 ORTHO05D002571 1.1e-24 117.5 115 56.5
ECA232G2775 Erigeron canadensis HOM05D000113 ORTHO05D002571 1.5e-24 117.1 120 54.2
Glyma.01G040900 Glycine max HOM05D000113 ORTHO05D002571 3.2e-24 115.9 112 58.0
RcHm_v2.0_Chr7g0182681 Rosa chinensis HOM05D000113 ORTHO05D002571 4.2e-24 115.5 79 73.4
Ah.13g073050 Amaranthus hybridus HOM05D000113 ORTHO05D002571 5.5e-24 115.2 70 84.3
Lalb_Chr13g0294241 Lupinus albus HOM05D000113 ORTHO05D002571 5.5e-24 115.2 127 54.3
AL4G31370 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 7.2e-24 114.8 112 56.2
PSO409G0035 Papaver somniferum HOM05D000113 ORTHO05D002571 7.2e-24 114.8 117 56.4
PGSC0003DMG401024649 Solanum tuberosum HOM05D000113 ORTHO05D012125 9.4e-24 114.4 122 54.9
AT2G35340 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 1.2e-23 114.0 105 59.0
Sed0009402 Sechium edule HOM05D000113 ORTHO05D002571 1.2e-23 114.0 84 71.4
arahy.Tifrunner.gnm1.ann1.LUB4JJ Arachis hypogaea HOM05D000113 ORTHO05D002571 1.6e-23 113.6 79 72.2
Lj6g0016007 Lotus japonicus HOM05D000113 ORTHO05D002571 1.6e-23 113.6 76 75.0
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 2.1e-23 113.2 84 73.8
Ca_13800_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 2.7e-23 112.8 83 68.7
Migut.D01678 Erythranthe guttata HOM05D000113 ORTHO05D002571 2.7e-23 112.8 109 54.1
Rhsim06G0025800 Rhododendron simsii HOM05D000113 ORTHO05D002571 2.7e-23 112.8 114 56.1
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 2.7e-23 112.8 114 56.1
Cc04_g15030 Coffea canephora HOM05D000113 ORTHO05D012125 3.6e-23 112.5 126 50.0
AL1G46740 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 4.7e-23 112.1 117 53.8
FAN18G0690 Fragaria x ananassa HOM05D000113 ORTHO05D002571 6.1e-23 111.7 79 72.2
Medtr1g010030 Medicago truncatula HOM05D000113 ORTHO05D002571 6.1e-23 111.7 117 58.1
Carub.0001s3090 Capsella rubella HOM05D000113 ORTHO05D002571 8.0e-23 111.3 117 53.0
FvH4_5g14240 Fragaria vesca HOM05D000113 ORTHO05D002571 8.0e-23 111.3 79 72.2
Psat0s3790g0040 Pisum sativum HOM05D000113 ORTHO05D002571 1.8e-22 110.2 76 72.4
CAN.G479.26 Capsicum annuum HOM05D000113 ORTHO05D012125 2.3e-22 109.8 122 52.5
SEGI_02990 Sequoiadendron giganteum HOM05D000113 ORTHO05D002571 2.3e-22 109.8 106 52.8
VMungo1127G1561 Vigna mungo HOM05D000113 ORTHO05D002571 2.3e-22 109.8 80 70.0
Sabra15G0006800 Salix brachista HOM05D000113 ORTHO05D002571 3.0e-22 109.4 108 57.4
TPR.G12156 Trifolium pratense HOM05D000113 ORTHO05D002571 3.0e-22 109.4 76 72.4
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 4.0e-22 109.0 79 69.6
Sp1g28410 Schrenkiella parvula HOM05D000113 ORTHO05D002571 5.2e-22 108.6 117 52.1
CARHR031940 Cardamine hirsuta HOM05D000113 ORTHO05D002571 6.7e-22 108.2 117 51.3
Potri.015G008700 Populus trichocarpa HOM05D000113 ORTHO05D002571 8.8e-22 107.8 79 72.2
MD08G1042900 Malus domestica HOM05D000113 ORTHO05D002571 1.5e-21 107.1 108 57.4
Nitab4.5_0001410g0130 Nicotiana tabacum HOM05D000113 ORTHO05D002571 1.5e-21 107.1 110 52.7
PGSC0003DMG402024649 Solanum tuberosum HOM05D000113 ORTHO05D002571 1.5e-21 107.1 117 53.0
Solyc03g115400.2 Solanum lycopersicum HOM05D000113 ORTHO05D012125 2.0e-21 106.7 122 52.5
Aqoxy3G03585 Aquilegia oxysepala HOM05D000113 ORTHO05D002571 2.6e-21 106.3 119 48.7
Sopen03g034400 Solanum pennellii HOM05D000113 ORTHO05D002571 2.6e-21 106.3 120 53.3
Aa31LG7G3740 Aethionema arabicum HOM05D000113 ORTHO05D002571 5.7e-21 105.1 117 48.7
Oeu008272.2 Olea europaea HOM05D000113 ORTHO05D002571 5.7e-21 105.1 81 63.0
Nitab4.5_0004284g0070 Nicotiana tabacum HOM05D000113 ORTHO05D002571 7.5e-21 104.8 79 65.8
Medtr3g023880 Medicago truncatula HOM05D000113 ORTHO05D002571 9.7e-21 104.4 75 69.3
Aa31LG7G3630 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.7e-20 103.6 107 52.3
Thhalv10017881m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 2.2e-20 103.2 99 53.5
THA.LOC104812747 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 2.2e-20 103.2 77 66.2
HPP92_010044 Vanilla planifolia HOM05D000113 ORTHO05D002571 2.8e-20 102.8 117 51.3
AUR62002552 Chenopodium quinoa HOM05D000113 ORTHO05D002571 2.4e-19 99.8 138 52.2
ATR0064G016 Amborella trichopoda HOM05D000113 ORTHO05D002571 7.0e-19 98.2 79 60.8
Ciclev10017694m.g Citrus clementina HOM05D000113 ORTHO05D012125 2.0e-18 96.7 81 64.2
Aa31LG2G13460 Aethionema arabicum HOM05D000113 ORTHO05D002571 2.7e-18 96.3 81 61.7
SalBow7G4123 Salvia bowleyana HOM05D000113 ORTHO05D002571 4.5e-18 95.5 74 66.2
Nitab4.5_0001127g0130 Nicotiana tabacum HOM05D000113 ORTHO05D012125 2.2e-17 93.2 106 51.9
Lj5A105G62 Lonicera japonica HOM05D000113 ORTHO05D012125 5.0e-17 92.0 82 57.3
CDE02G1559 Ceratophyllum demersum HOM05D000113 ORTHO05D002571 6.5e-17 91.7 114 46.5
COL.COLO4_22215 Corchorus olitorius HOM05D000113 ORTHO05D002571 6.5e-17 91.7 109 48.6
RcHm_v2.0_Chr2g0092491 Rosa chinensis HOM05D000113 ORTHO05D002571 6.5e-17 91.7 122 49.2
FvH4_1g06760 Fragaria vesca HOM05D000113 ORTHO05D002571 1.9e-16 90.1 120 50.0
Peaxi162Scf00201g00132 Petunia axillaris HOM05D000113 ORTHO05D002571 1.9e-16 90.1 69 63.8
BcaC05g27851 Brassica carinata HOM05D000113 ORTHO05D002571 4.2e-16 89.0 74 58.1
C05p38490 Brassica napus HOM05D000113 ORTHO05D002571 4.2e-16 89.0 74 58.1
BolC5t32583H Brassica oleracea HOM05D000113 ORTHO05D002571 4.2e-16 89.0 74 58.1
AL7G28140 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 5.5e-16 88.6 115 41.7
CSS0030678 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 5.5e-16 88.6 117 44.4
Dinv22270 Davidia involucrata HOM05D000113 ORTHO05D002571 5.5e-16 88.6 77 58.4
BcaB03g13727 Brassica carinata HOM05D000113 ORTHO05D012125 7.2e-16 88.2 74 56.8
FAN23G0734 Fragaria x ananassa HOM05D000113 ORTHO05D002571 7.2e-16 88.2 120 48.3
HanXRQChr10g0308651 Helianthus annuus HOM05D000113 ORTHO05D002571 7.2e-16 88.2 82 56.1
A05p24800 Brassica napus HOM05D000113 ORTHO05D002571 9.4e-16 87.8 72 58.3
BraA05t21363Z Brassica rapa HOM05D000113 ORTHO05D002571 9.4e-16 87.8 72 58.3
QL10p018794 Quercus lobata HOM05D000113 ORTHO05D002571 2.1e-15 86.7 80 63.8
Mapoly0054s0103 Marchantia polymorpha HOM05D000113 ORTHO05D002571 6.1e-15 85.1 116 40.5
arahy.Tifrunner.gnm1.ann1.U2PNLV Arachis hypogaea HOM05D000113 ORTHO05D002571 4.0e-14 82.4 104 47.1
Prupe.6G014300 Prunus persica HOM05D000113 ORTHO05D012125 4.0e-14 82.4 72 63.9
Aa31LG7G6920 Aethionema arabicum HOM05D000113 ORTHO05D002571 5.2e-14 82.0 120 43.3
DCAR_021511 Daucus carota HOM05D000113 ORTHO05D002571 5.2e-14 82.0 114 46.5
SHI27002 Sapria himalayana HOM05D000113 ORTHO05D012125 2.6e-13 79.7 143 40.6
MD02G1072500 Malus domestica HOM05D000113 ORTHO05D002571 4.4e-13 79.0 116 46.6
Pp3c1_18490 Physcomitrium patens HOM05D000113 ORTHO05D002571 9.8e-13 77.8 78 43.6
Ciclev10024265m.g Citrus clementina HOM05D000113 ORTHO05D012125 3.7e-12 75.9 96 45.8
Hund09854 Selenicereus undatus HOM05D000113 ORTHO05D012125 1.1e-11 74.3 103 46.6
HanXRQChr12g0377671 Helianthus annuus HOM05D000113 ORTHO05D012125 2.4e-11 73.2 111 45.9
Atru.chr12.1784 Acer truncatum HOM05D000113 ORTHO05D012125 3.1e-11 72.8 51 68.6
Thhalv10006650m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 1.2e-10 70.9 117 37.6
Lsat_1_v5_gn_6_69341 Lactuca sativa HOM05D000113 ORTHO05D002571 1.6e-10 70.5 58 56.9
Nitab4.5_0008517g0020 Nicotiana tabacum HOM05D000113 ORTHO05D002571 4.5e-10 68.9 79 48.1
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 5.9e-10 68.6 55 56.4
SEGI_38837 Sequoiadendron giganteum HOM05D000113 ORTHO05D012125 5.9e-10 68.6 54 55.6
Nitab4.5_0000219g0080 Nicotiana tabacum HOM05D000113 ORTHO05D002571 7.7e-10 68.2 78 47.4
Hund13422 Selenicereus undatus HOM05D000113 ORTHO05D002571 1.0e-09 67.8 87 44.8
TWI81G1049 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 5.0e-09 65.5 72 51.4
DCAR_026352 Daucus carota HOM05D000113 ORTHO05D002571 8.6e-09 64.7 114 35.1
SMO356G0256 Selaginella moellendorffii HOM05D000113 ORTHO05D002571 1.5e-08 63.9 96 37.5
Lsat_1_v5_gn_9_24861 Lactuca sativa HOM05D000113 ORTHO05D002571 2.5e-08 63.2 81 49.4
HanXRQChr09g0270171 Helianthus annuus HOM05D000113 ORTHO05D002571 4.2e-08 62.4 59 49.2
RcHm_v2.0_Chr2g0092541 Rosa chinensis HOM05D000113 ORTHO05D002571 4.2e-08 62.4 77 45.5
Gohir.D04G183400 Gossypium hirsutum HOM05D000113 ORTHO05D002571 1.2e-07 60.8 74 45.9
Gohir.A04G140200 Gossypium hirsutum HOM05D000113 ORTHO05D002571 8.0e-07 58.2 49 55.1
FAN26G0487 Fragaria x ananassa HOM05D000113 ORTHO05D012125 1.4e-06 57.4 52 63.5
FAN19G3029 Fragaria x ananassa HOM05D000113 ORTHO05D012125 1.8e-06 57.0 123 36.6
FAN19G0651 Fragaria x ananassa HOM05D000113 ORTHO05D002571 3.0e-06 56.2 77 45.5
FvH4_1g06770 Fragaria vesca HOM05D000113 ORTHO05D002571 6.8e-06 55.1 77 44.2
FAN26G0107 Fragaria x ananassa HOM05D000113 ORTHO05D002571 6.8e-06 55.1 108 36.1
FAN26G1920 Fragaria x ananassa HOM05D000113 ORTHO05D002571 6.8e-06 55.1 108 36.1


User provided reference genes

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