Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.1e-87 326.6 172 100.0
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 1.3e-40 170.2 127 76.4
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.6e-36 156.0 136 61.0
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 7.6e-36 154.5 175 54.3
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 1.3e-35 153.7 178 55.1
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 1.9e-34 149.8 144 56.9
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 1.9e-34 149.8 179 52.0
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 9.3e-34 147.5 153 51.0
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 1.2e-33 147.1 154 53.2
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 2.1e-33 146.4 169 50.3
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 2.1e-33 146.4 136 58.1
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 4.6e-33 145.2 172 50.6
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 6.0e-33 144.8 159 50.9
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 7.9e-33 144.4 120 60.8
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 1.3e-32 143.7 141 53.9
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 1.8e-32 143.3 146 54.8
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 2.3e-32 142.9 145 51.7
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 3.9e-32 142.1 148 50.7
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 3.9e-32 142.1 130 57.7
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 5.1e-32 141.7 171 50.9
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 8.7e-32 141.0 141 56.0
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 8.7e-32 141.0 137 58.4
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 1.1e-31 140.6 146 54.8
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 1.1e-31 140.6 142 55.6
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.5e-31 140.2 128 55.5
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.9e-31 139.8 120 60.0
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.9e-31 139.8 144 54.2
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 2.5e-31 139.4 167 45.5
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 4.3e-31 138.7 171 49.1
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 5.7e-31 138.3 145 55.9
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 5.7e-31 138.3 145 51.7
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 7.4e-31 137.9 152 52.0
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 7.4e-31 137.9 165 50.9
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 9.7e-31 137.5 139 54.7
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.6e-30 136.7 129 55.0
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.6e-30 136.7 137 56.2
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.6e-30 136.7 140 55.7
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 1.6e-30 136.7 130 52.3
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.2e-30 136.3 141 53.9
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 2.2e-30 136.3 140 52.9
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.2e-30 136.3 145 53.8
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.2e-30 136.3 137 56.2
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 2.8e-30 136.0 131 54.2
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 2.8e-30 136.0 152 48.7
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 3.7e-30 135.6 130 55.4
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 3.7e-30 135.6 136 54.4
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 6.3e-30 134.8 131 54.2
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 8.2e-30 134.4 128 51.6
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.8e-29 133.3 141 52.5
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 3.1e-29 132.5 163 49.1
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 3.1e-29 132.5 146 50.7
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 6.9e-29 131.3 133 51.9
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.5e-28 130.2 135 54.1
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 1.5e-28 130.2 152 48.0
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.5e-28 130.2 137 51.8
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 1.5e-28 130.2 142 52.8
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 2.6e-28 129.4 138 50.7
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 3.4e-28 129.0 141 51.1
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 4.5e-28 128.6 123 50.4
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 4.5e-28 128.6 171 49.7
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 4.5e-28 128.6 173 48.0
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 5.9e-28 128.3 124 51.6
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 7.6e-28 127.9 137 50.4
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 7.6e-28 127.9 143 46.9
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 1.0e-27 127.5 172 47.1
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 1.3e-27 127.1 132 53.8
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.3e-27 127.1 172 45.9
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.7e-27 126.7 170 44.7
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.7e-27 126.7 150 48.7
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 2.2e-27 126.3 132 53.0
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 2.9e-27 125.9 131 53.4
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 2.9e-27 125.9 158 44.3
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.9e-27 125.9 125 48.8
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 6.5e-27 124.8 160 43.1
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 8.5e-27 124.4 136 50.7
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 8.5e-27 124.4 130 50.0
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.1e-26 124.0 145 49.0
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.4e-26 123.6 139 51.8
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 1.4e-26 123.6 161 46.6
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 3.2e-26 122.5 138 51.4
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 3.2e-26 122.5 138 51.4
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 4.2e-26 122.1 135 51.9
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 5.5e-26 121.7 142 47.9
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 7.2e-26 121.3 170 45.3
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 2.1e-25 119.8 169 45.0
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 2.1e-25 119.8 89 65.2
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 3.6e-25 119.0 137 48.9
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 4.6e-25 118.6 134 50.7
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 4.6e-25 118.6 136 47.1
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 6.1e-25 118.2 156 41.7
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 3.9e-24 115.5 138 47.1
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 3.9e-24 115.5 101 58.4
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 6.7e-24 114.8 135 45.9
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 6.7e-24 114.8 146 47.3
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 6.7e-24 114.8 139 46.8
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 6.7e-24 114.8 146 47.3
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 6.7e-24 114.8 175 42.9
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-23 114.0 141 45.4
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 1.1e-23 114.0 141 45.4
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 3.3e-23 112.5 170 41.2
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 5.7e-23 111.7 137 51.1
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 5.7e-23 111.7 118 53.4
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 7.4e-23 111.3 153 44.4
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 9.7e-23 110.9 87 63.2
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 1.3e-22 110.5 91 61.5
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.3e-22 110.5 160 43.8
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 3.7e-22 109.0 91 54.9
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 4.8e-22 108.6 132 45.5
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 6.3e-22 108.2 130 46.9
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 8.2e-22 107.8 172 41.9
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 8.2e-22 107.8 132 43.2
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 8.2e-22 107.8 132 43.2
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 1.1e-21 107.5 91 52.7
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 1.4e-21 107.1 162 41.4
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.8e-21 106.7 82 63.4
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 1.8e-21 106.7 153 41.2
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 5.3e-21 105.1 153 40.5
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 6.9e-21 104.8 87 58.6
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.2e-20 104.0 139 44.6
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.2e-20 104.0 139 44.6
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.2e-20 104.0 139 44.6
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 1.2e-20 104.0 90 55.6
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 3.4e-20 102.4 137 42.3
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 5.9e-20 101.7 148 40.5
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 7.7e-20 101.3 150 39.3
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 7.7e-20 101.3 150 39.3
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 5.0e-19 98.6 120 47.5
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 5.0e-19 98.6 145 39.3
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 8.5e-19 97.8 158 39.9
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 1.1e-18 97.4 150 38.7
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 3.2e-18 95.9 75 64.0
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 7.2e-18 94.7 132 43.2
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 1.2e-17 94.0 125 39.2
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 3.6e-17 92.4 104 46.2
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 4.7e-17 92.0 120 44.2
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 4.7e-17 92.0 172 37.2
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 6.1e-17 91.7 94 52.1
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 7.9e-17 91.3 144 39.6
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 6.7e-16 88.2 152 36.2
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 8.8e-16 87.8 130 42.3
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 1.5e-15 87.0 122 43.4
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 3.3e-15 85.9 61 68.9
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 3.4e-12 75.9 100 42.0
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 4.5e-12 75.5 89 46.1
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 5.9e-12 75.1 127 37.8
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.0e-11 74.3 52 67.3
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 1.3e-11 73.9 162 33.3
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 8.5e-11 71.2 89 40.4
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 5.5e-10 68.6 71 47.9
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 2.7e-09 66.2 90 44.4
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 5.2e-08 62.0 46 63.0
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.6e-07 59.7 150 30.0
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 7.4e-07 58.2 43 65.1
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 4.8e-06 55.5 143 30.8


User provided reference genes

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