Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 5.4e-311 1070.1 526 100.0
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 4.7e-286 987.3 526 92.6
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 3.7e-206 721.8 524 71.9
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 1.5e-162 577.0 542 57.2
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 1.5e-130 470.7 541 49.5
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 3.0e-107 393.3 484 45.0
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 1.8e-104 384.0 489 46.4
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 2.4e-104 383.6 507 45.0
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 2.1e-100 370.5 491 45.0
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 2.7e-100 370.2 479 43.6
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 2.7e-100 370.2 479 43.6
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 5.1e-99 365.9 478 44.4
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 2.5e-98 363.6 488 43.6
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 1.4e-96 357.8 456 44.7
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.8e-96 357.5 515 41.2
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 4.5e-95 352.8 460 45.2
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 5.8e-95 352.4 482 41.5
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 2.9e-94 350.1 454 44.9
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 1.9e-93 347.4 331 53.8
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 5.5e-93 345.9 507 39.8
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.6e-92 344.4 484 42.8
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 2.1e-92 344.0 438 46.1
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 2.7e-92 343.6 438 46.1
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 6.0e-92 342.4 470 42.1
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 7.9e-92 342.0 438 46.1
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 3.9e-91 339.7 438 44.7
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.9e-90 337.4 506 40.3
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 3.3e-90 336.7 464 43.5
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 4.3e-90 336.3 477 40.3
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.1e-89 334.0 452 42.0
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 3.1e-88 330.1 464 40.7
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 6.9e-88 328.9 430 44.2
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 1.5e-87 327.8 473 43.6
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 2.0e-87 327.4 475 40.0
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 2.0e-87 327.4 470 43.0
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 3.4e-87 326.6 515 40.4
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 6.5e-86 322.4 447 41.2
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 6.5e-86 322.4 495 39.8
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 8.4e-86 322.0 483 43.3
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 1.1e-85 321.6 335 50.4
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 2.5e-85 320.5 426 44.1
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 1.2e-84 318.2 468 39.7
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.6e-84 317.8 515 40.2
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 3.5e-84 316.6 437 43.0
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 6.1e-84 315.8 334 47.6
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 1.0e-83 315.1 472 41.5
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 6.7e-83 312.4 503 39.4
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 8.7e-83 312.0 419 41.5
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 7.4e-82 308.9 366 45.6
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 9.7e-82 308.5 441 42.0
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 1.6e-81 307.8 470 39.4
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 4.8e-81 306.2 478 38.7
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 6.3e-81 305.8 333 48.3
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 4.1e-80 303.1 455 41.1
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 9.0e-80 302.0 333 47.1
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.6e-79 300.4 510 37.8
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 3.4e-79 300.1 367 43.9
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 5.9e-79 299.3 312 48.4
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 1.0e-78 298.5 473 37.4
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 1.7e-78 297.7 462 40.9
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 2.9e-78 297.0 441 42.2
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 3.8e-78 296.6 474 38.6
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 5.0e-78 296.2 483 40.4
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 5.0e-78 296.2 429 40.3
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 6.5e-78 295.8 425 42.4
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 6.5e-78 295.8 496 39.3
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 6.5e-78 295.8 499 36.7
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 2.5e-77 293.9 338 44.7
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 3.2e-77 293.5 332 48.2
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 1.0e-75 288.5 355 44.8
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 5.1e-75 286.2 435 40.9
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 6.7e-75 285.8 469 39.2
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 1.1e-74 285.0 305 48.5
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 9.7e-74 282.0 416 40.6
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 2.8e-73 280.4 315 46.0
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 4.8e-73 279.6 411 40.1
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 4.5e-71 273.1 473 38.3
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.0e-70 271.9 404 42.6
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 6.5e-70 269.2 322 45.3
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 1.6e-68 264.6 412 40.3
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 6.1e-68 262.7 474 34.6
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 6.1e-68 262.7 400 39.5
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 2.3e-67 260.8 439 38.0
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 3.9e-67 260.0 416 38.2
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 5.1e-67 259.6 300 46.0
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 1.5e-66 258.1 455 37.8
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 9.7e-66 255.4 448 37.5
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 6.3e-65 252.7 328 44.8
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 1.4e-64 251.5 494 33.4
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 1.2e-63 248.4 321 43.6
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 5.9e-63 246.1 366 39.1
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 7.7e-63 245.7 324 42.0
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 1.2e-60 238.4 315 40.6
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 2.1e-60 237.7 317 40.4
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 8.0e-60 235.7 282 45.4
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 2.3e-59 234.2 432 35.2
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 5.2e-59 233.0 319 42.9
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 7.5e-58 229.2 477 32.9
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 1.2e-55 221.9 302 40.7
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 2.7e-55 220.7 379 36.4
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 1.6e-52 211.5 319 39.8
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 1.6e-52 211.5 250 46.0
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 1.6e-52 211.5 164 58.5
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 4.7e-52 209.9 424 33.0
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 6.1e-52 209.5 410 35.4
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 3.0e-51 207.2 281 42.0
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 8.8e-51 205.7 266 44.4
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 8.8e-51 205.7 266 44.4
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 1.5e-50 204.9 286 41.6
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 1.5e-50 204.9 335 38.5
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 3.4e-50 203.8 317 39.7
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 4.4e-50 203.4 241 46.1
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 7.5e-50 202.6 238 45.4
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 3.7e-49 200.3 260 44.2
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 1.4e-48 198.4 299 42.1
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 1.8e-48 198.0 307 40.7
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 4.1e-48 196.8 312 35.9
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 1.2e-47 195.3 441 34.0
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 4.5e-47 193.4 257 43.6
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 1.7e-46 191.4 303 38.9
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 1.7e-46 191.4 270 41.1
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 1.7e-46 191.4 270 41.1
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 3.8e-46 190.3 270 40.7
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 1.5e-45 188.3 206 43.7
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.5e-45 188.3 353 36.3
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 1.0e-43 182.2 417 33.3
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.8e-43 181.4 259 40.9
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 2.0e-42 177.9 272 36.8
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 3.7e-41 173.7 186 48.9
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 4.1e-40 170.2 231 40.7
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 2.7e-39 167.5 309 32.0
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 3.8e-38 163.7 118 62.7
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 1.8e-35 154.8 109 66.1
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 2.0e-31 141.4 299 31.1
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.9e-29 134.8 286 34.6
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 8.0e-28 129.4 269 33.8
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 6.8e-27 126.3 307 29.3
Phvul.007G142700 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 1.1e-24 119.0 196 37.2
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.4e-24 118.6 213 37.6
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 3.2e-24 117.5 211 35.5
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 3.5e-23 114.0 304 31.9
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 8.6e-22 109.4 76 60.5
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 3.6e-20 104.0 299 29.4
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 4.0e-19 100.5 134 44.0
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.5e-18 98.6 86 52.3
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 2.4e-16 91.3 150 36.7
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 7.1e-16 89.7 116 36.2
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 3.3e-13 80.9 148 33.8
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 5.6e-13 80.1 148 33.8
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 2.1e-12 78.2 172 30.8
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 8.1e-12 76.3 146 30.8
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.4e-11 75.5 224 29.5
SGA_v2.0_scaffold25G11141 Striga asiatica HOM05D004258 ORTHO05D005163 3.5e-07 60.8 76 40.8
Carub.0003s3352 Capsella rubella HOM05D003999 ORTHO05D005219 1.0e-06 59.3 83 33.7
CBR_g54334 Chara braunii HOM05D002415 ORTHO05D002522 1.0e-06 59.3 49 49.0
Pp3c24_14110 Physcomitrium patens HOM05D002415 ORTHO05D002522 1.0e-06 59.3 51 39.2
SGA_v2.0_scaffold28G11967 Striga asiatica HOM05D004258 ORTHO05D005163 1.3e-06 58.9 66 40.9
Psat6g036000 Pisum sativum HOM05D002415 ORTHO05D002522 1.7e-06 58.5 80 35.0
Oeu047167.1 Olea europaea HOM05D004258 ORTHO05D005163 3.9e-06 57.4 51 41.2
Nn3g18920 Nelumbo nucifera HOM05D002415 ORTHO05D002522 6.6e-06 56.6 50 40.0
Sabra15G0007600 Salix brachista HOM05D002415 ORTHO05D002522 6.6e-06 56.6 70 32.9
Solyc11g005730.3 Solanum lycopersicum HOM05D002415 ORTHO05D002522 6.6e-06 56.6 61 34.4
Sopen11g001690 Solanum pennellii HOM05D002415 ORTHO05D002522 6.6e-06 56.6 61 34.4
BraA09t38238Z Brassica rapa HOM05D004447 ORTHO05D005973 8.6e-06 56.2 74 32.4
Peaxi162Scf00012g01926 Petunia axillaris HOM05D002415 ORTHO05D002522 8.6e-06 56.2 71 31.0
Psat5g084240 Pisum sativum HOM05D004258 ORTHO05D005163 8.6e-06 56.2 47 42.6


User provided reference genes

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