Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62026510 Chenopodium quinoa HOM05D000207 ORTHO05D004956 1.5e-138 496.1 239 100.0
AUR62026315 Chenopodium quinoa HOM05D000207 ORTHO05D004956 2.2e-49 199.9 112 87.5
CsaV3_6G051140 Cucumis sativus L. HOM05D000207 ORTHO05D004956 2.5e-45 186.4 90 96.7
Sc25g0003710 Simmondsia chinensis HOM05D000207 ORTHO05D004956 4.3e-45 185.7 87 98.9
Lsat_1_v5_gn_6_103061 Lactuca sativa HOM05D000207 ORTHO05D004956 7.3e-45 184.9 89 93.3
Duzib043G0002 Durio zibethinus HOM05D000207 ORTHO05D004956 9.6e-45 184.5 86 100.0
Duzib160G0169 Durio zibethinus HOM05D000207 ORTHO05D004956 9.6e-45 184.5 86 100.0
Duzib235G1015 Durio zibethinus HOM05D000207 ORTHO05D004956 1.2e-44 184.1 86 98.8
Gohir.A05G111600 Gossypium hirsutum HOM05D000207 ORTHO05D004956 1.2e-44 184.1 86 98.8
Gohir.D05G112000 Gossypium hirsutum HOM05D000207 ORTHO05D004956 1.2e-44 184.1 86 98.8
Gorai.009G116200 Gossypium raimondii HOM05D000207 ORTHO05D004956 1.2e-44 184.1 86 98.8
Hund03049 Selenicereus undatus HOM05D000207 ORTHO05D004956 1.2e-44 184.1 86 98.8
Cc03_g05640 Coffea canephora HOM05D000207 ORTHO05D004956 2.1e-44 183.3 86 96.5
CANSAT54G2786 Cannabis sativa HOM05D000207 ORTHO05D004956 2.8e-44 183.0 86 97.7
MELO3C007190.2 Cucumis melo HOM05D000207 ORTHO05D004956 2.8e-44 183.0 86 98.8
Potri.008G168000 Populus trichocarpa HOM05D000207 ORTHO05D004956 2.8e-44 183.0 86 97.7
GSVIVG01027834001 Vitis vinifera HOM05D000207 ORTHO05D004956 2.8e-44 183.0 86 97.7
ClCG01G024000 Citrullus lanatus HOM05D000207 ORTHO05D004956 3.6e-44 182.6 86 97.7
PGR031G0434 Punica granatum HOM05D000207 ORTHO05D004956 3.6e-44 182.6 86 97.7
Thecc.06G005500 Theobroma cacao HOM05D000207 ORTHO05D004956 3.6e-44 182.6 86 97.7
TWI53G1374 Tripterygium wilfordii HOM05D000207 ORTHO05D004956 3.6e-44 182.6 86 97.7
Atru.chr4.2043 Acer truncatum HOM05D000207 ORTHO05D004956 4.7e-44 182.2 86 96.5
Atru.chr4.2046 Acer truncatum HOM05D000207 ORTHO05D004956 4.7e-44 182.2 86 96.5
Manes.15G041801 Manihot esculenta HOM05D000207 ORTHO05D004956 4.7e-44 182.2 86 96.5
Potri.010G070500 Populus trichocarpa HOM05D000207 ORTHO05D004956 4.7e-44 182.2 86 97.7
Hund11897 Selenicereus undatus HOM05D000207 ORTHO05D004956 4.7e-44 182.2 86 97.7
BcaB02g08614 Brassica carinata HOM05D000207 ORTHO05D000606 6.2e-44 181.8 86 96.5
BcaC06g35508 Brassica carinata HOM05D000207 ORTHO05D004956 6.2e-44 181.8 86 96.5
A04p07690 Brassica napus HOM05D000207 ORTHO05D000606 6.2e-44 181.8 86 96.5
A07p09140 Brassica napus HOM05D000207 ORTHO05D004956 6.2e-44 181.8 86 96.5
C04p41370 Brassica napus HOM05D000207 ORTHO05D000606 6.2e-44 181.8 86 96.5
C07p14090 Brassica napus HOM05D000207 ORTHO05D004956 6.2e-44 181.8 86 96.5
BolC7t41906H Brassica oleracea HOM05D000207 ORTHO05D004956 6.2e-44 181.8 86 96.5
BraA07t28708Z Brassica rapa HOM05D000207 ORTHO05D004956 6.2e-44 181.8 86 96.5
CANSAT78G1427 Cannabis sativa HOM05D000207 ORTHO05D004956 6.2e-44 181.8 86 96.5
Ciclev10013219m.g Citrus clementina HOM05D000207 ORTHO05D004956 6.2e-44 181.8 86 96.5
Thhalv10021852m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 6.2e-44 181.8 86 96.5
Nitab4.5_0001379g0120 Nicotiana tabacum HOM05D000207 ORTHO05D004956 6.2e-44 181.8 86 97.7
Nitab4.5_0003038g0050 Nicotiana tabacum HOM05D000207 ORTHO05D004956 6.2e-44 181.8 86 97.7
Solyc08g069080.4 Solanum lycopersicum HOM05D000207 ORTHO05D004956 6.2e-44 181.8 86 97.7
Sopen04g004070 Solanum pennellii HOM05D000207 ORTHO05D004956 6.2e-44 181.8 86 97.7
PGSC0003DMG400025301 Solanum tuberosum HOM05D000207 ORTHO05D004956 6.2e-44 181.8 86 97.7
THA.LOC104808632 Tarenaya hassleriana HOM05D000207 ORTHO05D004956 6.2e-44 181.8 86 96.5
TAR365G0659 Trochodendron aralioides HOM05D000207 ORTHO05D004956 6.2e-44 181.8 86 96.5
Aqoxy1G01024 Aquilegia oxysepala HOM05D000207 ORTHO05D004956 8.1e-44 181.4 86 96.5
CSS0020261 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004956 8.1e-44 181.4 86 97.7
Sopen08g022730 Solanum pennellii HOM05D000207 ORTHO05D004956 1.1e-43 181.0 86 96.5
HPP92_005049 Vanilla planifolia HOM05D000207 ORTHO05D004956 1.1e-43 181.0 100 85.0
BcaC02g09324 Brassica carinata HOM05D000207 ORTHO05D004956 1.4e-43 180.6 86 95.3
BolC4t25716H Brassica oleracea HOM05D000207 ORTHO05D004956 1.4e-43 180.6 86 95.3
CARHR099290 Cardamine hirsuta HOM05D000207 ORTHO05D004956 1.4e-43 180.6 86 95.3
COL.COLO4_26870 Corchorus olitorius HOM05D000207 ORTHO05D004956 1.4e-43 180.6 86 95.3
MELO3C006416.2 Cucumis melo HOM05D000207 ORTHO05D004956 1.4e-43 180.6 86 96.5
CsaV3_3G012020 Cucumis sativus L. HOM05D000207 ORTHO05D004956 1.4e-43 180.6 86 96.5
Eucgr.E04319 Eucalyptus grandis HOM05D000207 ORTHO05D004956 1.4e-43 180.6 86 95.3
Thhalv10026688m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 1.4e-43 180.6 86 95.3
Nn1g06872 Nelumbo nucifera HOM05D000207 ORTHO05D004956 1.4e-43 180.6 86 95.3
Sp3g20990 Schrenkiella parvula HOM05D000207 ORTHO05D004956 1.4e-43 180.6 86 95.3
Solyc04g008890.3 Solanum lycopersicum HOM05D000207 ORTHO05D004956 1.4e-43 180.6 86 96.5
Lsat_1_v5_gn_3_117461 Lactuca sativa HOM05D000207 ORTHO05D004956 1.8e-43 180.3 86 95.3
HanXRQChr03g0091521 Helianthus annuus HOM05D000207 ORTHO05D004956 2.4e-43 179.9 86 95.3
HanXRQChr13g0421281 Helianthus annuus HOM05D000207 ORTHO05D004956 2.4e-43 179.9 86 95.3
Os08g0444100 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 2.4e-43 179.9 86 94.2
PSO170G5684 Papaver somniferum HOM05D000207 ORTHO05D004956 2.4e-43 179.9 86 95.3
PSO198G0064 Papaver somniferum HOM05D000207 ORTHO05D004956 2.4e-43 179.9 86 95.3
PSO210G1216 Papaver somniferum HOM05D000207 ORTHO05D004956 2.4e-43 179.9 86 95.3
Ciclev10006856m.g Citrus clementina HOM05D000207 ORTHO05D004956 3.1e-43 179.5 86 95.3
ECA232G2626 Erigeron canadensis HOM05D000207 ORTHO05D004956 3.1e-43 179.5 86 95.3
ECA240G3918 Erigeron canadensis HOM05D000207 ORTHO05D004956 3.1e-43 179.5 86 95.3
Os08g0278966 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 3.1e-43 179.5 86 94.2
Sp7g12410 Schrenkiella parvula HOM05D000207 ORTHO05D004956 3.1e-43 179.5 86 94.2
AL7G41900 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 4.0e-43 179.1 86 94.2
Carub.0003s2357 Capsella rubella HOM05D000207 ORTHO05D004956 4.0e-43 179.1 86 94.2
CDE06G2823 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 4.0e-43 179.1 86 95.3
ClCG05G004290 Citrullus lanatus HOM05D000207 ORTHO05D004956 4.0e-43 179.1 86 95.3
Sed0003648 Sechium edule HOM05D000207 ORTHO05D004956 4.0e-43 179.1 86 95.3
Sed0023527 Sechium edule HOM05D000207 ORTHO05D004956 4.0e-43 179.1 86 95.3
Actinidia39908 Actinidia chinensis HOM05D000207 ORTHO05D004956 5.2e-43 178.7 86 95.3
DCAR_024259 Daucus carota HOM05D000207 ORTHO05D004956 5.2e-43 178.7 86 94.2
Dinv27061 Davidia involucrata HOM05D000207 ORTHO05D004956 5.2e-43 178.7 86 95.3
MD03G1200200 Malus domestica HOM05D000207 ORTHO05D004956 5.2e-43 178.7 86 95.3
Hma1.2p1_0992F.1_g245270 Hydrangea macrophylla HOM05D000207 ORTHO05D004956 6.9e-43 178.3 85 95.3
PSO210G6748 Papaver somniferum HOM05D000207 ORTHO05D004956 9.0e-43 177.9 86 93.0
Prupe.4G214000 Prunus persica HOM05D000207 ORTHO05D004956 9.0e-43 177.9 86 95.3
AL3G37970 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 1.2e-42 177.6 86 93.0
AT3G23325 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 1.2e-42 177.6 86 93.0
AT4G14342 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 1.2e-42 177.6 86 93.0
Dinv36552 Davidia involucrata HOM05D000207 ORTHO05D004956 1.2e-42 177.6 87 94.3
MSTRG.21917 Avicennia marina HOM05D000207 ORTHO05D004956 1.5e-42 177.2 86 95.3
Migut.N00279 Erythranthe guttata HOM05D000207 ORTHO05D004956 1.5e-42 177.2 86 95.3
Lalb_Chr02g0158811 Lupinus albus HOM05D000207 ORTHO05D004956 1.5e-42 177.2 86 93.0
PGSC0003DMG400026872 Solanum tuberosum HOM05D000207 ORTHO05D004956 1.5e-42 177.2 87 96.6
Glyma.08G291500 Glycine max HOM05D000207 ORTHO05D004956 2.0e-42 176.8 88 89.8
Mapoly0001s0403 Marchantia polymorpha HOM05D000207 ORTHO05D004956 2.0e-42 176.8 86 93.0
CiPaw.02G111100 Carya illinoinensis HOM05D000207 ORTHO05D004956 2.6e-42 176.4 86 94.2
MD11G1217300 Malus domestica HOM05D000207 ORTHO05D004956 2.6e-42 176.4 86 93.0
unitig_748.g7329 Utricularia gibba HOM05D000207 ORTHO05D000606 2.6e-42 176.4 86 94.2
Glyma.18G132700 Glycine max HOM05D000207 ORTHO05D004956 3.4e-42 176.0 86 91.9
Lj3g0015983 Lotus japonicus HOM05D000207 ORTHO05D004956 3.4e-42 176.0 86 91.9
Phvul.003G055200 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 4.4e-42 175.6 86 91.9
FAN25G2312 Fragaria x ananassa HOM05D000207 ORTHO05D004956 5.8e-42 175.3 86 93.0
RcHm_v2.0_Chr5g0039761 Rosa chinensis HOM05D000207 ORTHO05D004956 7.6e-42 174.9 86 93.0
Ca_08207_v3 Cicer arietinum L. HOM05D000207 ORTHO05D004956 9.9e-42 174.5 86 89.5
Psat4g126040 Pisum sativum HOM05D000207 ORTHO05D004956 9.9e-42 174.5 86 89.5
Psat6g018880 Pisum sativum HOM05D000207 ORTHO05D004956 9.9e-42 174.5 86 89.5
Actinidia11350 Actinidia chinensis HOM05D000207 ORTHO05D004956 1.7e-41 173.7 86 93.0
AagrBONN_evm.TU.Sc2ySwM_344.2015 Anthoceros agrestis HOM05D000207 ORTHO05D004956 1.7e-41 173.7 86 93.0
FvH4_3g22750 Fragaria vesca HOM05D000207 ORTHO05D004956 1.7e-41 173.7 86 91.9
FvH4_7g05750 Fragaria vesca HOM05D000207 ORTHO05D004956 1.7e-41 173.7 86 91.9
FAN16G2624 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.7e-41 173.7 86 91.9
Migut.G00508 Erythranthe guttata HOM05D000207 ORTHO05D004956 2.9e-41 172.9 86 91.9
Medtr8g062750 Medicago truncatula HOM05D000207 ORTHO05D004956 6.4e-41 171.8 86 87.2
CBR_g8906 Chara braunii HOM05D000207 ORTHO05D004956 8.4e-41 171.4 86 89.5
FAN16G2286 Fragaria x ananassa HOM05D000207 ORTHO05D004956 8.4e-41 171.4 86 90.7
SMO232G0034 Selaginella moellendorffii HOM05D000207 ORTHO05D004956 1.1e-40 171.0 85 89.4
Medtr3g019300 Medicago truncatula HOM05D000207 ORTHO05D004956 1.9e-40 170.2 86 87.2
Medtr3g019310 Medicago truncatula HOM05D000207 ORTHO05D004956 1.9e-40 170.2 86 87.2
FAN14G2395 Fragaria x ananassa HOM05D000709 ORTHO05D004956 5.4e-40 168.7 86 88.4
MBI07_g16899_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 2.1e-39 166.8 106 76.4
vmacro15450 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 2.1e-39 166.8 109 77.1
FAN05G5047 Fragaria x ananassa HOM05D000709 ORTHO05D004956 3.5e-39 166.0 86 87.2
FAN09G1394 Fragaria x ananassa HOM05D000709 ORTHO05D004956 3.5e-39 166.0 86 87.2
FAN01G2221 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.3e-38 163.3 102 77.5
AUR62021059 Chenopodium quinoa HOM05D000003 ORTHO05D020420 5.1e-38 162.2 123 62.6
FAN02G2410 Fragaria x ananassa HOM05D000709 ORTHO05D004956 1.1e-37 161.0 86 84.9
MCO09G487 Micromonas commoda HOM05D000207 ORTHO05D004956 5.6e-37 158.7 86 82.6
Phvul.009G163800 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 7.3e-37 158.3 76 92.1
Sabra10G0036900 Salix brachista HOM05D000207 ORTHO05D004956 2.0e-34 150.2 78 88.5
EL10Ac3g04993 Beta vulgaris HOM05D000001 ORTHO05D000003 2.6e-34 149.8 70 98.6
Oeu005091.1 Olea europaea HOM05D000207 ORTHO05D004956 2.6e-34 149.8 70 98.6
arahy.Tifrunner.gnm1.ann1.Q94Q39 Arachis hypogaea HOM05D000677 ORTHO05D000727 4.5e-34 149.1 73 93.2
vmacro21393 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 4.5e-34 149.1 74 94.6
Sabra08G0128000 Salix brachista HOM05D000207 ORTHO05D004956 5.8e-34 148.7 70 97.1
PGSC0003DMG400029581 Solanum tuberosum HOM05D000207 ORTHO05D004956 5.8e-34 148.7 72 94.4
vmacro21388 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 5.8e-34 148.7 72 95.8
Cpa.g.c34811.1 Carica papaya HOM05D000207 ORTHO05D004956 7.6e-34 148.3 70 95.7
QL06p018332 Quercus lobata HOM05D000207 ORTHO05D004956 7.6e-34 148.3 70 97.1
BraA04t16461Z Brassica rapa HOM05D000207 ORTHO05D000606 9.9e-34 147.9 71 94.4
VMungo1127G0964 Vigna mungo HOM05D000207 ORTHO05D004956 1.3e-33 147.5 74 89.2
Zm00001eb176950 Zea mays HOM05D000207 ORTHO05D004956 1.3e-33 147.5 70 95.7
HPP92_005064 Vanilla planifolia HOM05D000207 ORTHO05D004956 1.7e-33 147.1 70 95.7
FAN06G2225 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.2e-33 146.7 92 75.0
SalBow3G2895 Salvia bowleyana HOM05D000207 ORTHO05D004956 2.2e-33 146.7 74 93.2
CiPaw.01G183100 Carya illinoinensis HOM05D000207 ORTHO05D004956 2.9e-33 146.4 70 95.7
Aa31LG9G3040 Aethionema arabicum HOM05D001185 ORTHO05D002551 3.8e-33 146.0 70 94.3
arahy.Tifrunner.gnm1.ann1.AU04TH Arachis hypogaea HOM05D000207 ORTHO05D004956 3.8e-33 146.0 70 94.3
arahy.Tifrunner.gnm1.ann1.DCT04E Arachis hypogaea HOM05D000207 ORTHO05D004956 3.8e-33 146.0 70 94.3
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 3.8e-33 146.0 70 94.3
RcHm_v2.0_Chr7g0179491 Rosa chinensis HOM05D000207 ORTHO05D004956 3.8e-33 146.0 80 82.5
AUR62041309 Chenopodium quinoa HOM05D000003 ORTHO05D000007 8.4e-33 144.8 123 54.5
Cre14.g627900 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D004956 8.4e-33 144.8 83 74.7
PSO063G3293 Papaver somniferum HOM05D000207 ORTHO05D004956 1.1e-32 144.4 70 92.9
Cfa022948 Carpinus fangiana HOM05D000411 ORTHO05D004956 1.4e-32 144.1 69 95.7
FAN03G1535 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.4e-32 143.3 70 92.9
FAN10G1241 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.4e-32 143.3 70 92.9
arahy.Tifrunner.gnm1.ann1.6C1XPZ Arachis hypogaea HOM05D000207 ORTHO05D004956 7.1e-32 141.7 70 91.4
AUR62014610 Chenopodium quinoa HOM05D000003 ORTHO05D011948 2.1e-31 140.2 128 53.1
PRCOL_00006150 Prasinoderma coloniale HOM05D000207 ORTHO05D004956 2.1e-31 140.2 86 72.1
unitig_32.g11701 Utricularia gibba HOM05D000207 ORTHO05D004956 1.5e-29 134.0 95 72.6
MBI16_g42515_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 4.3e-29 132.5 78 80.8
CAN.G274.30 Capsicum annuum HOM05D000207 ORTHO05D004956 5.3e-27 125.6 58 96.6
vmacro12999 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 2.6e-26 123.2 64 92.2
MD12G1011100 Malus domestica HOM05D000207 ORTHO05D004956 1.7e-25 120.6 79 75.9
CDE02G4280 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 2.9e-25 119.8 57 93.0
A06p07840 Brassica napus HOM05D000207 ORTHO05D004956 4.9e-25 119.0 59 89.8
Lj4g0019776 Lotus japonicus HOM05D000207 ORTHO05D004956 9.3e-24 114.8 86 66.3
VMungo0251G1197 Vigna mungo HOM05D000207 ORTHO05D004956 3.5e-23 112.8 53 94.3
AagrBONN_evm.TU.Sc2ySwM_369.181 Anthoceros agrestis HOM05D000207 ORTHO05D004956 1.3e-22 110.9 57 84.2
Pp3c25_1640 Physcomitrium patens HOM05D000207 ORTHO05D004956 4.3e-21 105.9 56 80.4
Lj4g0025571 Lotus japonicus HOM05D000207 ORTHO05D004956 1.3e-20 104.4 76 67.1
Gohir.1Z049411 Gossypium hirsutum HOM05D000207 ORTHO05D004956 2.0e-18 97.1 45 97.8
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 2.2e-17 93.6 46 87.0
AUR62005088 Chenopodium quinoa HOM05D000157 ORTHO05D020420 4.9e-17 92.4 117 43.6
AUR62035763 Chenopodium quinoa HOM05D000003 ORTHO05D000006 4.2e-16 89.4 93 48.4
A09p67600 Brassica napus HOM05D000207 ORTHO05D004956 9.3e-16 88.2 41 92.7
Eucgr.L00218 Eucalyptus grandis HOM05D000207 ORTHO05D004956 7.9e-15 85.1 44 88.6
AagrBONN_evm.TU.Sc2ySwM_344.4872 Anthoceros agrestis HOM05D000170 ORTHO05D000159 1.8e-11 73.9 36 91.7
vmacro16885 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 6.9e-11 72.0 39 87.2
AUR62002977 Chenopodium quinoa HOM05D006650 ORTHO05D008401 1.1e-08 64.7 64 45.3
MBI13_g27727_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 1.4e-08 64.3 34 82.4
Ah.14g081440 Amaranthus hybridus HOM05D000207 ORTHO05D004956 7.2e-08 62.0 36 75.0
Peaxi162Scf00681g00334 Petunia axillaris HOM05D000207 ORTHO05D004956 9.4e-08 61.6 29 96.6
Zm00001eb114180 Zea mays HOM05D000207 ORTHO05D004956 3.6e-07 59.7 36 77.8


User provided reference genes

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