Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 3.6e-291 1004.2 519 100.0
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 1.8e-277 958.7 520 95.8
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 6.6e-224 780.8 502 80.5
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 1.8e-205 719.5 532 70.5
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 4.6e-201 704.9 535 70.1
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 6.0e-201 704.5 466 77.0
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.3e-200 703.4 534 69.1
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 1.3e-200 703.4 525 71.6
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 5.1e-200 701.4 527 69.6
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.9e-199 699.5 534 68.7
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 5.6e-199 698.0 526 69.4
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 9.5e-199 697.2 533 70.9
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 2.8e-198 695.7 522 71.6
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 2.8e-198 695.7 540 68.1
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 3.6e-198 695.3 540 68.1
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 8.9e-197 690.6 534 69.9
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 1.5e-196 689.9 540 67.6
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 3.4e-196 688.7 537 68.7
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 1.7e-195 686.4 558 66.5
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 4.9e-195 684.9 547 66.2
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 6.4e-195 684.5 537 67.8
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 1.1e-194 683.7 458 74.7
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 1.9e-194 682.9 533 68.7
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 2.4e-194 682.6 527 68.3
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 4.1e-194 681.8 462 74.7
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 1.2e-193 680.2 529 69.9
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 2.7e-193 679.1 539 67.0
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 6.0e-193 677.9 553 65.6
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 2.3e-192 676.0 535 68.8
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 3.0e-192 675.6 535 66.7
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 5.1e-192 674.9 542 67.2
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 1.1e-191 673.7 559 64.6
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 7.3e-191 671.0 549 67.4
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 6.2e-190 667.9 535 65.0
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 8.1e-190 667.5 450 74.4
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 1.4e-189 666.8 496 72.6
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.4e-189 666.8 567 64.2
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 3.1e-189 665.6 535 66.4
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.5e-188 663.3 460 73.3
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 1.5e-188 663.3 466 72.3
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 2.0e-188 662.9 533 65.3
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 2.0e-188 662.9 566 63.6
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 4.4e-188 661.8 535 66.0
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 5.8e-188 661.4 588 61.9
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 5.8e-188 661.4 537 64.6
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 2.9e-187 659.1 462 72.7
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 3.8e-187 658.7 441 76.2
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 6.4e-187 657.9 462 71.4
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 2.4e-186 656.0 553 62.6
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 4.2e-186 655.2 489 71.8
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 4.6e-185 651.7 474 69.8
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 6.0e-185 651.4 523 68.3
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 2.3e-184 649.4 534 63.7
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 2.3e-184 649.4 541 65.1
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 1.1e-183 647.1 492 70.1
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 5.6e-183 644.8 474 70.3
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 7.3e-183 644.4 459 72.3
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 7.3e-183 644.4 459 72.3
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 2.1e-182 642.9 459 72.3
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 2.8e-182 642.5 459 72.3
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 2.8e-182 642.5 459 72.3
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 3.6e-182 642.1 534 63.7
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 4.8e-182 641.7 541 65.2
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 6.2e-182 641.3 543 64.8
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 6.2e-182 641.3 538 64.7
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 8.1e-182 641.0 481 69.9
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 8.1e-182 641.0 455 72.5
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 8.1e-182 641.0 531 63.8
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 9.0e-181 637.5 525 66.1
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 4.4e-180 635.2 461 70.7
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 4.9e-179 631.7 539 64.0
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 4.9e-179 631.7 475 67.8
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 8.4e-179 630.9 479 70.1
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 1.9e-178 629.8 512 66.4
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 1.9e-178 629.8 480 69.4
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 9.3e-178 627.5 481 69.9
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 6.0e-177 624.8 548 63.0
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 1.7e-176 623.2 459 70.6
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 3.3e-175 619.0 478 67.8
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 3.3e-175 619.0 503 66.4
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 1.6e-174 616.7 503 66.0
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 4.8e-174 615.1 491 67.6
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 3.4e-172 609.0 472 68.2
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 3.2e-170 602.4 475 69.5
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 9.3e-170 600.9 471 67.1
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 2.7e-169 599.4 463 67.6
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 3.5e-169 599.0 462 70.1
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 2.3e-168 596.3 473 65.1
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 1.5e-164 583.6 473 64.7
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 4.6e-161 572.0 427 70.5
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 4.3e-159 565.5 530 58.9
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 5.1e-152 542.0 375 71.5
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 1.8e-149 533.5 398 66.3
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 1.7e-142 510.4 526 55.3
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 4.5e-140 502.3 540 54.3
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.5e-103 380.9 392 53.6
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 1.6e-97 360.9 298 64.8
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 3.4e-87 326.6 453 41.9
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.7e-83 314.3 271 60.9
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 1.9e-82 310.8 425 41.4
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 9.5e-82 308.5 230 66.5
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 3.1e-80 303.5 167 86.2
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 7.6e-79 298.9 232 64.7
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 1.6e-68 264.6 266 56.0
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 2.1e-65 254.2 200 65.0
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 6.2e-65 252.7 407 38.8
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 2.4e-64 250.8 487 36.1
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 4.8e-57 226.5 262 50.4
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 5.3e-56 223.0 125 80.8
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 1.3e-54 218.4 125 82.4
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 4.2e-53 213.4 148 74.3
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 5.6e-50 203.0 178 57.9
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.2e-44 185.3 167 65.3
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 2.3e-43 181.0 248 40.7
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 3.3e-34 150.6 80 85.0
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 1.9e-29 134.8 221 39.8
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 1.1e-26 125.6 112 65.2
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 7.7e-23 112.8 71 64.8
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 2.7e-20 104.4 95 60.0
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 4.4e-18 97.1 83 65.1
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 4.5e-15 87.0 114 47.4
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 5.9e-15 86.7 53 73.6
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 2.9e-14 84.3 102 53.9
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 4.2e-13 80.5 90 47.8
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 7.2e-13 79.7 82 56.1
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 3.0e-11 74.3 140 41.4
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 4.0e-11 73.9 43 69.8
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 2.2e-09 68.2 131 42.0
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 5.3e-08 63.5 32 93.8
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 1.2e-07 62.4 57 61.4


User provided reference genes

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