Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.4e-184 649.4 329 100.0
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 4.8e-180 634.4 330 98.2
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 7.7e-162 573.9 330 87.9
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 2.8e-151 538.9 376 76.6
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.4e-147 526.6 333 81.4
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 5.0e-145 518.1 333 79.9
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.2e-143 513.5 330 79.7
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 4.7e-143 511.5 330 78.2
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 6.4e-140 501.1 330 77.0
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.8e-139 499.6 332 78.0
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 9.2e-139 497.3 332 76.5
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 1.2e-138 496.9 329 75.7
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 5.0e-137 491.5 336 75.9
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 8.6e-137 490.7 333 75.7
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 1.1e-136 490.3 332 74.4
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 7.3e-136 487.6 332 74.4
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 1.2e-135 486.9 331 74.0
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.2e-135 486.9 332 73.2
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 1.6e-135 486.5 332 73.8
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 3.6e-135 485.3 338 75.7
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 6.2e-135 484.6 331 75.2
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 1.1e-134 483.8 338 74.9
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 1.1e-134 483.8 332 74.7
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.8e-134 483.0 330 72.4
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 2.3e-134 482.6 332 73.5
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 4.0e-134 481.9 332 73.5
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 4.0e-134 481.9 331 74.0
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 8.9e-134 480.7 331 74.0
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 2.6e-133 479.2 332 73.2
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 9.8e-133 477.2 330 71.5
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 9.8e-133 477.2 331 73.7
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 1.3e-132 476.9 329 72.3
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 2.2e-132 476.1 333 73.3
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.9e-132 475.7 331 71.3
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 3.7e-132 475.3 333 73.9
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 8.3e-132 474.2 333 73.3
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 1.1e-131 473.8 338 74.9
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 5.4e-131 471.5 332 72.6
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 9.2e-131 470.7 330 72.7
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.6e-130 469.9 335 74.3
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 2.7e-130 469.2 329 71.7
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 2.7e-130 469.2 331 71.6
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 1.0e-129 467.2 332 71.7
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.3e-129 466.8 332 72.0
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 1.3e-129 466.8 338 72.5
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 1.3e-129 466.8 333 71.8
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.9e-129 465.3 339 72.9
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 1.1e-128 463.8 334 71.6
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 1.9e-128 463.0 333 71.2
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 5.6e-128 461.5 317 72.6
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 7.3e-128 461.1 340 70.9
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 7.3e-128 461.1 340 70.9
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 6.2e-127 458.0 338 71.3
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 1.4e-126 456.8 342 71.9
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 4.0e-126 455.3 333 69.7
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 4.0e-126 455.3 334 71.6
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 6.8e-126 454.5 333 68.2
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 8.9e-126 454.1 333 70.0
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 8.9e-126 454.1 334 68.9
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 1.2e-125 453.8 333 70.0
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.5e-125 453.4 331 69.8
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 2.0e-125 453.0 333 69.7
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.0e-125 453.0 336 71.1
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 2.6e-125 452.6 333 69.4
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 3.4e-125 452.2 336 69.0
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 3.4e-125 452.2 324 71.9
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 4.4e-125 451.8 337 71.2
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.8e-125 451.4 333 69.7
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 1.7e-124 449.9 337 71.2
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 3.7e-124 448.7 333 69.4
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 3.7e-124 448.7 338 71.0
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 1.4e-123 446.8 337 70.9
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 1.9e-123 446.4 333 68.5
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 1.9e-123 446.4 331 70.1
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.4e-123 446.0 333 69.1
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 5.4e-123 444.9 344 68.9
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 7.1e-123 444.5 333 68.5
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.1e-122 443.0 328 66.8
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 1.3e-121 440.3 334 67.7
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 6.6e-121 438.0 334 68.0
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 2.5e-120 436.0 340 67.9
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 2.5e-120 436.0 328 68.6
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 2.5e-120 436.0 328 68.6
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 5.6e-120 434.9 331 67.7
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 1.2e-119 433.7 341 68.0
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 2.8e-119 432.6 323 68.4
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 6.2e-119 431.4 328 65.5
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 1.1e-118 430.6 330 67.3
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.4e-118 430.3 341 68.0
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.5e-117 426.8 330 67.9
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 2.0e-117 426.4 337 68.2
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 9.9e-117 424.1 335 68.1
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 1.3e-116 423.7 337 67.4
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 2.9e-116 422.5 337 65.6
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 6.4e-116 421.4 352 63.1
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 1.4e-115 420.2 332 64.8
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.4e-115 420.2 328 64.9
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 4.1e-115 418.7 339 66.1
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.5e-112 410.2 354 63.6
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.5e-112 410.2 354 63.6
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 2.5e-112 409.5 340 65.0
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 4.9e-108 395.2 356 63.2
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 6.4e-108 394.8 332 63.0
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 2.7e-106 389.4 262 74.4
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.7e-105 386.7 335 62.7
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 9.6e-104 380.9 351 59.3
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 1.3e-103 380.6 351 59.5
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 6.9e-102 374.8 340 58.2
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 1.2e-101 374.0 356 60.7
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 3.8e-100 369.0 282 69.1
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 1.9e-99 366.7 357 58.8
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 3.2e-99 365.9 344 59.3
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 1.6e-98 363.6 328 59.5
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 5.1e-97 358.6 331 57.4
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 1.4e-86 323.9 321 57.6
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 3.1e-86 322.8 322 56.5
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.2e-82 310.8 228 69.3
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.1e-75 287.7 246 66.7
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 3.0e-73 279.6 210 70.0
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 8.8e-73 278.1 350 47.1
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 7.2e-67 258.5 254 57.5
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.2e-66 257.7 273 58.6
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 2.3e-65 253.4 188 70.7
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 1.5e-64 250.8 184 69.6
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 7.2e-59 231.9 357 42.3
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 2.1e-58 230.3 380 41.6
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 8.0e-58 228.4 346 41.9
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 6.3e-55 218.8 353 41.6
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 7.7e-53 211.8 346 42.5
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 3.8e-52 209.5 215 54.4
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 1.1e-46 191.4 226 52.2
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 5.0e-44 182.6 172 50.6
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 1.9e-43 180.6 366 36.6
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 9.5e-35 151.8 373 32.7
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 2.2e-31 140.6 356 34.0
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.6e-29 134.4 116 63.8
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 1.9e-27 127.5 363 32.2
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 1.6e-26 124.4 181 42.0
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 7.5e-24 115.5 84 64.3
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 3.7e-23 113.2 106 52.8
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 6.0e-21 105.9 85 62.4
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 7.8e-21 105.5 81 58.0
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 2.3e-20 104.0 125 48.8
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 8.6e-20 102.1 81 56.8
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.9e-19 100.9 101 54.5
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 2.6e-16 90.5 149 35.6
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 6.4e-15 85.9 55 72.7
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.1e-13 80.9 58 70.7
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 1.7e-12 77.8 41 82.9
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.7e-12 77.8 80 58.8
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 3.0e-12 77.0 72 51.4
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 3.3e-11 73.6 333 24.9
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 1.4e-09 68.2 171 26.3
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.2e-08 65.1 118 34.7
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 5.8e-08 62.8 53 52.8
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 5.4e-06 56.2 43 62.8
ATR0019G039 Amborella trichopoda HOM05D004877 ORTHO05D005942 9.2e-06 55.5 54 55.6


User provided reference genes

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