Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1928.7 1015 100.0
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1681.8 969 91.5
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1441.4 1027 77.8
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1415.2 983 76.5
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1367.4 970 76.9
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1219.1 982 67.9
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1219.1 989 68.6
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1218.0 986 67.7
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1206.0 989 66.3
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1201.8 987 67.6
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1200.3 1041 63.9
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1198.0 985 67.3
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1196.8 984 66.1
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1195.6 974 66.3
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1190.3 984 67.1
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1189.1 990 66.3
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1187.6 987 65.9
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1186.8 984 66.4
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1186.8 984 66.4
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1184.1 984 66.9
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1182.5 984 66.4
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1182.2 997 65.4
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1182.2 980 66.0
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1181.0 991 67.1
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1178.3 979 66.9
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1177.9 979 65.8
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1177.2 981 65.5
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1176.0 979 66.3
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1174.5 979 66.1
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1172.5 1001 65.2
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1167.5 982 65.0
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1166.8 1010 63.7
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1163.7 979 65.7
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1163.7 1030 62.6
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1162.1 985 64.8
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1161.4 1029 62.8
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1161.0 1038 64.0
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1159.8 1018 63.0
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1158.3 984 65.5
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1157.9 1037 63.6
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1154.0 975 64.9
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1154.0 993 64.5
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1153.7 977 66.0
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1153.7 975 65.0
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1153.7 1006 64.3
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1153.7 1060 62.5
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1152.1 1038 63.8
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1152.1 1015 63.3
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1149.0 1031 61.7
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1149.0 1041 62.6
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1146.0 982 64.8
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1145.2 994 64.2
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1145.2 1019 63.1
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1142.9 979 65.2
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1138.6 983 64.6
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1132.1 985 63.9
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1127.1 1157 55.9
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1122.8 986 63.5
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1120.9 987 63.9
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1117.8 986 63.8
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1117.1 980 63.0
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1116.3 980 64.2
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1115.5 977 63.6
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1115.5 977 63.6
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1114.8 977 63.5
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1114.4 977 63.6
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1113.6 973 63.5
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1109.4 980 63.0
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1108.2 980 63.0
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1106.3 977 63.8
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1105.9 977 62.4
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1104.0 975 63.4
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1103.2 971 61.8
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1103.2 980 63.0
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1102.8 974 63.7
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1097.8 977 62.5
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1088.6 976 61.9
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1077.4 976 61.6
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 9.9e-309 1063.5 986 58.3
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 3.9e-305 1051.6 983 60.8
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 1.8e-302 1042.7 987 60.2
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 1.5e-296 1023.1 822 67.3
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 9.3e-291 1003.8 944 60.5
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 4.6e-290 1001.5 846 64.7
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 4.8e-287 991.5 923 61.9
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 2.4e-286 989.2 831 66.4
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 2.7e-282 975.7 1004 55.1
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 3.0e-281 972.2 1009 55.5
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 8.7e-281 970.7 878 62.8
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 6.9e-278 961.1 718 71.9
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 7.4e-264 914.4 943 57.1
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 7.5e-248 861.3 1065 47.2
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 1.1e-246 857.4 984 52.0
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.4e-246 857.1 1012 49.8
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 4.0e-241 839.0 1069 47.1
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 1.0e-236 824.3 1000 47.9
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 6.8e-233 811.6 710 62.3
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 2.8e-194 683.3 906 48.1
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 4.9e-191 672.5 596 63.6
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 2.3e-188 663.7 784 51.7
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 7.9e-181 638.6 620 57.9
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 3.1e-177 626.7 666 54.8
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 5.7e-171 605.9 543 62.6
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 2.2e-146 524.2 974 34.4
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 9.1e-137 492.3 562 51.8
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 9.1e-129 465.7 390 63.1
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 7.7e-120 436.0 370 61.4
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 4.4e-115 420.2 360 62.2
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 1.7e-114 418.3 983 30.8
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 1.4e-113 415.2 359 59.6
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 8.0e-109 399.4 289 70.2
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.3e-103 381.3 305 64.9
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 3.3e-102 377.5 226 84.1
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 5.8e-99 366.7 932 30.7
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 1.4e-97 362.1 1291 26.7
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 9.2e-97 359.4 395 51.1
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 2.1e-96 358.2 226 78.8
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 1.0e-95 355.9 226 81.4
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.1e-81 309.3 289 55.7
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 2.8e-77 294.7 168 88.1
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 1.1e-76 292.7 222 69.4
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.5e-70 271.6 248 59.3
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.4e-68 265.0 202 64.9
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 4.2e-65 254.2 139 92.1
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 1.0e-58 233.0 181 67.4
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.9e-54 218.8 140 75.0
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 8.2e-53 213.4 204 57.8
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.9e-50 204.9 131 74.0
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 2.7e-48 198.4 256 46.9
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 3.6e-48 198.0 104 94.2
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.0e-47 196.4 131 71.8
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 1.1e-41 176.4 161 61.5
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 7.2e-41 173.7 757 26.9
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 6.1e-40 170.6 94 90.4
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 7.4e-38 163.7 122 71.3
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.3e-34 152.9 109 67.0
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 1.3e-29 136.3 150 54.7
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 5.9e-27 127.5 203 44.8
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.0e-26 126.7 86 73.3
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 2.2e-26 125.6 80 75.0
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 9.4e-25 120.2 165 41.8
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 2.7e-24 118.6 139 50.4
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 2.6e-22 112.1 85 63.5
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 1.2e-14 86.7 42 92.9
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 2.5e-09 68.9 45 80.0


User provided reference genes

Program Settings