Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 2620.5 1326 100.0
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 2531.5 1326 96.7
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 2210.6 1331 84.2
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1900.2 1335 73.3
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1686.4 1338 63.5
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1686.0 1337 65.3
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1670.2 1331 63.1
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1664.0 1335 63.3
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1663.7 1337 63.8
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1640.6 1400 60.6
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1615.5 1287 62.9
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1615.5 1331 62.7
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1605.9 1334 61.1
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1601.6 1335 61.0
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1600.9 1327 60.7
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1597.0 1327 61.1
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1593.9 1339 60.7
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1589.7 1330 61.5
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1587.8 1332 61.5
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1572.4 1331 60.7
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1570.8 1477 55.8
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1570.4 1340 59.9
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1570.4 1342 60.0
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1570.4 1334 60.6
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1568.5 1331 60.6
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1567.0 1343 61.1
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1563.9 1335 60.8
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1562.7 1342 61.1
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1559.7 1334 60.5
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1558.9 1341 60.2
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1558.5 1343 60.3
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1557.3 1353 60.4
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1557.0 1243 62.8
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1554.3 1336 60.2
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1549.3 1293 60.8
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1548.1 1342 60.1
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1548.1 1346 59.7
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1547.3 1331 60.2
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1546.9 1343 60.0
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1542.3 1346 59.1
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1533.9 1344 59.4
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1528.1 1339 59.4
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1510.7 1342 58.0
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1505.7 1343 58.4
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1502.6 1379 57.3
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1500.7 1331 57.9
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1497.3 1336 57.6
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1495.7 1312 58.6
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1494.2 1334 57.4
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1491.9 1337 59.0
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1486.5 1343 57.5
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1486.5 1334 57.3
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1483.0 1341 59.0
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1483.0 1341 57.4
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1481.8 1335 57.4
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1481.5 1311 57.6
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1476.8 1342 57.3
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1473.8 1207 61.7
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1473.4 1342 57.7
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1472.2 1207 61.5
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1466.4 1341 57.9
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1464.5 1325 56.5
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1462.2 1336 57.0
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1461.0 1335 57.5
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1461.0 1342 57.1
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1456.4 1335 56.9
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1449.5 1341 57.1
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1449.1 1341 56.2
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1448.7 1304 56.8
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1440.6 1341 56.7
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1431.8 1345 56.9
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1424.8 1345 55.8
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1381.3 1341 54.7
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1374.4 1322 54.8
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1365.1 1329 54.2
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1364.0 1328 54.4
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1359.0 1257 55.6
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1349.7 1323 54.3
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1348.2 1337 54.3
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1338.9 1327 54.0
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1338.2 1271 54.4
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1334.3 1324 53.7
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1332.8 1335 53.9
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1331.6 1327 53.7
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1325.8 1327 53.5
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1325.8 1327 53.5
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1315.4 1339 52.8
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1255.4 1319 51.6
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1239.6 1315 51.0
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1204.1 1341 48.8
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1200.7 1287 50.0
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1198.7 1333 48.3
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1195.6 986 62.8
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1189.9 1097 56.5
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1130.2 975 59.3
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1128.6 911 62.6
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 9.0e-310 1067.4 1246 48.5
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 5.8e-309 1064.7 861 63.0
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 1.6e-274 950.3 1319 42.5
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 2.0e-272 943.3 1310 43.9
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 6.3e-247 858.6 1286 40.7
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 8.9e-233 811.6 1126 40.6
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 7.5e-232 808.5 1290 39.3
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 4.6e-229 799.3 1282 37.2
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 8.3e-223 778.5 968 45.5
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 8.2e-162 575.9 482 59.3
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 3.8e-151 540.4 589 49.6
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 2.2e-143 514.6 590 49.7
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 5.9e-120 436.8 1143 28.8
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 3.9e-103 380.9 291 62.2
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 2.8e-101 374.8 318 60.4
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 4.0e-100 370.9 324 55.6
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 5.2e-100 370.5 365 53.4
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 3.4e-83 314.7 1064 27.8
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 7.6e-75 287.0 283 58.3
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.7e-66 259.2 201 64.2
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 1.6e-61 242.7 223 54.7
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 3.7e-61 241.5 310 44.2
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.1e-60 238.4 183 64.5
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 4.1e-52 211.5 301 42.2
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.7e-45 188.3 183 51.4
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 9.1e-36 157.1 119 64.7
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 3.6e-32 145.2 660 26.2
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 2.2e-29 136.0 128 57.0
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 3.6e-24 118.6 117 53.0
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 2.0e-19 102.8 100 46.0
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 1.0e-18 100.5 74 66.2
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 4.1e-12 78.6 110 46.4
Ah.01g013690 Amaranthus hybridus HOM05D005691 ORTHO05D007096 9.5e-09 67.4 73 57.5
Ah.14g082590 Amaranthus hybridus HOM05D005691 ORTHO05D007096 9.5e-09 67.4 73 57.5
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 9.5e-09 67.4 72 59.7
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 8.9e-07 60.8 213 26.8


User provided reference genes

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