Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016777 Chenopodium quinoa HOM05D000725 ORTHO05D003141 7.8e-132 473.8 235 100.0
AUR62011280 Chenopodium quinoa HOM05D000725 ORTHO05D003141 5.8e-119 431.0 276 81.2
EL10Ac9g21686 Beta vulgaris HOM05D000725 ORTHO05D003141 1.2e-76 290.4 278 57.9
Ah.01g019080 Amaranthus hybridus HOM05D000725 ORTHO05D003141 1.4e-59 233.8 275 51.3
Sc14g0002030 Simmondsia chinensis HOM05D000725 ORTHO05D003141 3.3e-42 176.0 281 39.5
Ciclev10027795m.g Citrus clementina HOM05D000725 ORTHO05D003141 3.7e-33 146.0 274 35.0
CiPaw.05G070200 Carya illinoinensis HOM05D000725 ORTHO05D003141 1.1e-32 144.4 250 37.6
Manes.04G086500 Manihot esculenta HOM05D000725 ORTHO05D003141 1.6e-31 140.6 266 34.6
QL11p045293 Quercus lobata HOM05D000725 ORTHO05D003141 3.8e-30 136.0 286 32.9
Lalb_Chr19g0132271 Lupinus albus HOM05D000725 ORTHO05D003141 8.5e-30 134.8 272 33.8
VMungo1127G0892 Vigna mungo HOM05D000725 ORTHO05D003141 8.5e-30 134.8 273 34.4
CiPaw.06G132300 Carya illinoinensis HOM05D000725 ORTHO05D003141 3.6e-28 129.4 263 34.2
TPR.G1890 Trifolium pratense HOM05D000725 ORTHO05D003141 4.7e-28 129.0 279 31.9
arahy.Tifrunner.gnm1.ann1.XRRC6E Arachis hypogaea HOM05D000725 ORTHO05D003141 1.8e-27 127.1 274 33.2
Lj1g0015165 Lotus japonicus HOM05D000725 ORTHO05D003141 1.8e-27 127.1 256 34.0
arahy.Tifrunner.gnm1.ann1.S1J40P Arachis hypogaea HOM05D000725 ORTHO05D003141 2.3e-27 126.7 274 32.5
Nitab4.5_0003234g0070 Nicotiana tabacum HOM05D000725 ORTHO05D003141 2.3e-27 126.7 280 33.6
Hund06249 Selenicereus undatus HOM05D000725 ORTHO05D003141 3.0e-27 126.3 196 41.8
Nitab4.5_0012853g0020 Nicotiana tabacum HOM05D000725 ORTHO05D003141 5.2e-27 125.6 276 32.2
Glyma.12G236100 Glycine max HOM05D000725 ORTHO05D003141 6.8e-27 125.2 254 32.7
Lalb_Chr01g0008001 Lupinus albus HOM05D000725 ORTHO05D003141 6.8e-27 125.2 285 30.9
Sed0009304 Sechium edule HOM05D000725 ORTHO05D003141 6.8e-27 125.2 278 31.7
Dinv23485 Davidia involucrata HOM05D000725 ORTHO05D003141 1.2e-26 124.4 246 33.3
Medtr8g037345 Medicago truncatula HOM05D000725 ORTHO05D003141 1.2e-26 124.4 289 32.5
Phvul.011G210600 Phaseolus vulgaris HOM05D000725 ORTHO05D003141 1.2e-26 124.4 257 34.6
Rhsim05G0070700 Rhododendron simsii HOM05D000725 ORTHO05D003141 2.0e-26 123.6 268 32.8
TWI79G0585 Tripterygium wilfordii HOM05D000725 ORTHO05D003141 2.0e-26 123.6 267 34.1
Sed0003616 Sechium edule HOM05D000725 ORTHO05D003141 3.4e-26 122.9 258 31.8
Manes.11G082500 Manihot esculenta HOM05D000725 ORTHO05D003141 4.4e-26 122.5 280 30.4
Oeu041616.1 Olea europaea HOM05D000725 ORTHO05D003141 4.4e-26 122.5 260 31.9
Ca_23901_v3 Cicer arietinum L. HOM05D000725 ORTHO05D003141 7.5e-26 121.7 270 31.1
Eucgr.G01701 Eucalyptus grandis HOM05D000725 ORTHO05D003141 9.8e-26 121.3 270 33.7
Potri.009G120700 Populus trichocarpa HOM05D000725 ORTHO05D003141 1.7e-25 120.6 247 34.0
Peaxi162Scf00016g00426 Petunia axillaris HOM05D000725 ORTHO05D003141 2.2e-25 120.2 291 32.3
MELO3C023332.2 Cucumis melo HOM05D000725 ORTHO05D003141 2.8e-25 119.8 262 32.1
Dinv42034 Davidia involucrata HOM05D000725 ORTHO05D003141 4.9e-25 119.0 254 32.7
Lj5g0015696 Lotus japonicus HOM05D000725 ORTHO05D003141 6.3e-25 118.6 262 32.8
TWI75G0750 Tripterygium wilfordii HOM05D000725 ORTHO05D003141 6.3e-25 118.6 242 34.7
Cc02_g17200 Coffea canephora HOM05D000725 ORTHO05D003141 1.1e-24 117.9 253 30.8
Prupe.8G090000 Prunus persica HOM05D000725 ORTHO05D003141 1.1e-24 117.9 253 35.2
ClCG11G004110 Citrullus lanatus HOM05D000725 ORTHO05D003141 2.4e-24 116.7 285 32.3
Thecc.02G079900 Theobroma cacao HOM05D000725 ORTHO05D003141 2.4e-24 116.7 265 31.7
CANSAT11G1287 Cannabis sativa HOM05D000725 ORTHO05D003141 3.1e-24 116.3 265 32.5
CsaV3_2G015070 Cucumis sativus L. HOM05D000725 ORTHO05D003141 5.4e-24 115.5 264 30.7
MD10G1068100 Malus domestica HOM05D000725 ORTHO05D003141 1.2e-23 114.4 261 33.3
PGR042G0782 Punica granatum HOM05D000725 ORTHO05D003141 2.0e-23 113.6 248 35.5
PGR042G3366 Punica granatum HOM05D000725 ORTHO05D003141 2.0e-23 113.6 256 34.8
Haze_02322 Corylus avellana HOM05D000725 ORTHO05D003141 3.5e-23 112.8 290 29.0
Psat4g193880 Pisum sativum HOM05D000725 ORTHO05D003141 3.5e-23 112.8 284 30.6
Gohir.A12G042200 Gossypium hirsutum HOM05D000725 ORTHO05D003141 5.9e-23 112.1 263 31.9
vmacro17455 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 1.0e-22 111.3 276 28.3
Psat7g126840 Pisum sativum HOM05D000725 ORTHO05D003141 2.9e-22 109.8 310 29.7
CAN.G1544.11 Capsicum annuum HOM05D000725 ORTHO05D003141 3.8e-22 109.4 290 30.3
Lj5g0009315 Lotus japonicus HOM05D000725 ORTHO05D003141 5.0e-22 109.0 249 31.3
Gohir.D12G030100 Gossypium hirsutum HOM05D000725 ORTHO05D003141 1.1e-21 107.8 263 30.0
Sopen01g052160 Solanum pennellii HOM05D000725 ORTHO05D003141 1.1e-21 107.8 285 30.5
Gorai.008G031000 Gossypium raimondii HOM05D000725 ORTHO05D003141 1.5e-21 107.5 263 30.0
PGSC0003DMG400030952 Solanum tuberosum HOM05D000725 ORTHO05D003141 1.5e-21 107.5 289 31.1
Lj5g0003943 Lotus japonicus HOM05D000725 ORTHO05D003141 1.9e-21 107.1 272 31.6
Solyc01g109970.3 Solanum lycopersicum HOM05D000725 ORTHO05D003141 2.5e-21 106.7 285 30.2
Actinidia02233 Actinidia chinensis HOM05D000725 ORTHO05D003141 3.3e-21 106.3 277 27.8
Lj3g0000422 Lotus japonicus HOM05D000725 ORTHO05D003141 4.3e-21 105.9 258 31.4
Lj6g0012773 Lotus japonicus HOM05D000725 ORTHO05D003141 4.3e-21 105.9 281 31.7
GSVIVG01024225001 Vitis vinifera HOM05D000725 ORTHO05D003141 5.6e-21 105.5 301 27.9
FAN24G2419 Fragaria x ananassa HOM05D000725 ORTHO05D003141 7.3e-21 105.1 262 31.7
SHI05568 Sapria himalayana HOM05D000725 ORTHO05D003141 7.3e-21 105.1 284 29.2
FAN27G2965 Fragaria x ananassa HOM05D000725 ORTHO05D003141 9.5e-21 104.8 252 32.1
Lj6g0007539 Lotus japonicus HOM05D000725 ORTHO05D003141 1.2e-20 104.4 257 32.3
Atru.chr5.3086 Acer truncatum HOM05D000725 ORTHO05D003141 2.8e-20 103.2 243 31.7
RcHm_v2.0_Chr6g0266061 Rosa chinensis HOM05D000725 ORTHO05D003141 4.7e-20 102.4 260 31.2
FAN15G1535 Fragaria x ananassa HOM05D000725 ORTHO05D003141 1.0e-19 101.3 253 31.2
GSVIVG01024512001 Vitis vinifera HOM05D000725 ORTHO05D003141 1.4e-19 100.9 295 28.8
FvH4_2g09760 Fragaria vesca HOM05D000725 ORTHO05D003141 2.3e-19 100.1 253 30.8
DCAR_003655 Daucus carota HOM05D000725 ORTHO05D003141 3.0e-19 99.8 267 27.7
TAR381G1393 Trochodendron aralioides HOM05D000725 ORTHO05D003141 3.0e-19 99.8 289 33.6
vmacro02076 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 8.9e-19 98.2 268 28.0
Lj5A193T102 Lonicera japonica HOM05D000725 ORTHO05D003141 1.2e-18 97.8 312 26.9
RcHm_v2.0_Chr1g0330471 Rosa chinensis HOM05D000725 ORTHO05D003141 1.5e-18 97.4 263 29.7
Migut.B00205 Erythranthe guttata HOM05D000725 ORTHO05D003141 2.0e-18 97.1 282 27.0
Actinidia27877 Actinidia chinensis HOM05D000725 ORTHO05D003141 3.4e-18 96.3 282 27.7
TPR.G23932 Trifolium pratense HOM05D000725 ORTHO05D003141 1.1e-16 91.3 355 26.2
Cpa.g.sc1026.2 Carica papaya HOM05D000725 ORTHO05D003141 1.8e-16 90.5 283 25.8
COL.COLO4_25995 Corchorus olitorius HOM05D000725 ORTHO05D003141 4.1e-16 89.4 282 28.0
Glyma.13G201800 Glycine max HOM05D000725 ORTHO05D003141 2.0e-15 87.0 343 25.4
Rhsim11G0180800 Rhododendron simsii HOM05D000725 ORTHO05D003141 1.3e-14 84.3 293 28.0
AL3G52550 Arabidopsis lyrata HOM05D000725 ORTHO05D003141 3.9e-14 82.8 298 26.8
MSTRG.16829 Avicennia marina HOM05D000725 ORTHO05D003141 1.5e-13 80.9 316 23.4
Potri.004G159000 Populus trichocarpa HOM05D000725 ORTHO05D003141 3.3e-13 79.7 342 23.4
Aqoxy5G01538 Aquilegia oxysepala HOM05D000725 ORTHO05D003141 1.6e-12 77.4 166 33.1
Gorai.013G034700 Gossypium raimondii HOM05D000725 ORTHO05D003141 1.6e-12 77.4 340 24.4
Medtr2g437480 Medicago truncatula HOM05D000725 ORTHO05D003141 2.1e-12 77.0 52 69.2
Gohir.A13G032200 Gossypium hirsutum HOM05D000725 ORTHO05D003141 2.8e-12 76.6 351 23.9
Sp3g29660 Schrenkiella parvula HOM05D000725 ORTHO05D003141 3.6e-12 76.3 315 24.8
Lj7A123T30 Lonicera japonica HOM05D000725 ORTHO05D003141 4.7e-12 75.9 55 61.8
CSS0026816 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D003141 6.2e-12 75.5 208 27.9
QL11p045326 Quercus lobata HOM05D000725 ORTHO05D003141 6.2e-12 75.5 54 61.1
THA.LOC104819623 Tarenaya hassleriana HOM05D000725 ORTHO05D003141 6.2e-12 75.5 303 24.8
DCAR_028963 Daucus carota HOM05D000725 ORTHO05D003141 1.0e-11 74.7 54 57.4
Gohir.D13G030500 Gossypium hirsutum HOM05D000725 ORTHO05D003141 1.0e-11 74.7 352 23.9
AUR62013100 Chenopodium quinoa HOM05D000725 ORTHO05D003141 1.4e-11 74.3 54 55.6
TAR625G0592 Trochodendron aralioides HOM05D000725 ORTHO05D003141 1.4e-11 74.3 56 66.1
QL11p045305 Quercus lobata HOM05D000725 ORTHO05D003141 1.8e-11 73.9 54 61.1
BcaC01g03023 Brassica carinata HOM05D000394 ORTHO05D003141 2.3e-11 73.6 291 26.1
C03p57010 Brassica napus HOM05D000394 ORTHO05D003141 2.3e-11 73.6 291 26.1
BolC3t17979H Brassica oleracea HOM05D000394 ORTHO05D003141 2.3e-11 73.6 291 26.1
Carub.0003s3016 Capsella rubella HOM05D000725 ORTHO05D003141 4.0e-11 72.8 335 23.6
DCAR_001556 Daucus carota HOM05D000725 ORTHO05D003141 4.0e-11 72.8 54 53.7
VMungo1127G1148 Vigna mungo HOM05D000725 ORTHO05D003141 4.0e-11 72.8 83 48.2
CDE03G0261 Ceratophyllum demersum HOM05D000725 ORTHO05D003141 5.2e-11 72.4 86 45.3
MBI11_g32386_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D003141 5.2e-11 72.4 54 64.8
CANSAT11G1508 Cannabis sativa HOM05D000725 ORTHO05D003141 8.9e-11 71.6 55 50.9
CSS0026935 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D003141 1.2e-10 71.2 54 57.4
Cc00_g19470 Coffea canephora HOM05D000725 ORTHO05D003141 1.2e-10 71.2 54 57.4
BraA03t13708Z Brassica rapa HOM05D000394 ORTHO05D003141 1.5e-10 70.9 288 23.3
AUR62010106 Chenopodium quinoa HOM05D000725 ORTHO05D003141 1.5e-10 70.9 53 52.8
A03p45780 Brassica napus HOM05D000394 ORTHO05D003141 2.0e-10 70.5 288 23.3
AT2G16390 Arabidopsis thaliana HOM05D000725 ORTHO05D003141 2.6e-10 70.1 267 23.6
Duzib248G0474 Durio zibethinus HOM05D000725 ORTHO05D003141 2.6e-10 70.1 55 60.0
ECA240G2411 Erigeron canadensis HOM05D000725 ORTHO05D003141 2.6e-10 70.1 51 62.7
RcHm_v2.0_Chr6g0266081 Rosa chinensis HOM05D000725 ORTHO05D003141 2.6e-10 70.1 54 57.4
Aqoxy5G01532 Aquilegia oxysepala HOM05D000725 ORTHO05D003141 3.4e-10 69.7 40 72.5
Phvul.011G210800 Phaseolus vulgaris HOM05D000725 ORTHO05D003141 3.4e-10 69.7 84 45.2
HanXRQChr12g0374341 Helianthus annuus HOM05D000725 ORTHO05D003141 7.5e-10 68.6 44 63.6
Hund06399 Selenicereus undatus HOM05D000725 ORTHO05D003141 7.5e-10 68.6 54 53.7
CDE06G1623 Ceratophyllum demersum HOM05D000725 ORTHO05D003141 9.8e-10 68.2 87 42.5
HanXRQChr03g0069371 Helianthus annuus HOM05D000725 ORTHO05D003141 9.8e-10 68.2 51 60.8
PSO210G6882 Papaver somniferum HOM05D000725 ORTHO05D003141 9.8e-10 68.2 40 67.5
PSO832G3117 Papaver somniferum HOM05D000725 ORTHO05D003141 9.8e-10 68.2 40 67.5
Carub.0004s0050 Capsella rubella HOM05D000725 ORTHO05D003141 1.3e-09 67.8 225 25.3
AT2G21450 Arabidopsis thaliana HOM05D000725 ORTHO05D003141 2.2e-09 67.0 200 25.0
HanXRQChr03g0069421 Helianthus annuus HOM05D000725 ORTHO05D003141 3.7e-09 66.2 49 55.1
PSO731G0040 Papaver somniferum HOM05D000725 ORTHO05D003141 3.7e-09 66.2 339 22.4
Prupe.8G089900 Prunus persica HOM05D000725 ORTHO05D003141 6.4e-09 65.5 54 53.7
PSO700G0205 Papaver somniferum HOM05D000725 ORTHO05D003141 8.3e-09 65.1 343 22.7
PSO063G2790 Papaver somniferum HOM05D000725 ORTHO05D003141 1.1e-08 64.7 40 65.0
PSO782G2318 Papaver somniferum HOM05D000725 ORTHO05D003141 1.1e-08 64.7 40 65.0
Ah.01g009440 Amaranthus hybridus HOM05D000725 ORTHO05D003141 1.4e-08 64.3 54 48.1
SGA_v2.0_scaffold58G20498 Striga asiatica HOM05D000725 ORTHO05D003141 1.4e-08 64.3 45 57.8
AL4G10630 Arabidopsis lyrata HOM05D000725 ORTHO05D003141 1.9e-08 63.9 197 25.4
Actinidia11757 Actinidia chinensis HOM05D000725 ORTHO05D003141 2.4e-08 63.5 126 27.8
C04p62740 Brassica napus HOM05D000725 ORTHO05D003141 9.2e-08 61.6 202 29.7
COL.COLO4_25997 Corchorus olitorius HOM05D000725 ORTHO05D003141 9.2e-08 61.6 40 55.0
ECA234G1026 Erigeron canadensis HOM05D000725 ORTHO05D003141 9.2e-08 61.6 46 54.3
BolC4t27758H Brassica oleracea HOM05D000725 ORTHO05D003141 1.2e-07 61.2 202 26.2
CAN.G9.13 Capsicum annuum HOM05D000725 ORTHO05D003141 1.2e-07 61.2 45 64.4
COL.COLO4_15200 Corchorus olitorius HOM05D000725 ORTHO05D003141 1.6e-07 60.8 59 52.5
ECA234G2709 Erigeron canadensis HOM05D000725 ORTHO05D003141 1.6e-07 60.8 48 50.0
BcaB06g28665 Brassica carinata HOM05D000725 ORTHO05D003141 2.0e-07 60.5 197 25.9
BraA03t12293Z Brassica rapa HOM05D000725 ORTHO05D003141 2.0e-07 60.5 204 26.0
Aa31LG8G13750 Aethionema arabicum HOM05D000725 ORTHO05D003141 3.5e-07 59.7 54 51.9
A02p25850 Brassica napus HOM05D000725 ORTHO05D003141 3.5e-07 59.7 197 27.9
Thhalv10000722m.g Eutrema salsugineum HOM05D000725 ORTHO05D003141 3.5e-07 59.7 200 28.0
BraA04t18064Z Brassica rapa HOM05D000725 ORTHO05D003141 6.0e-07 58.9 198 27.8
Lsat_1_v5_gn_5_120421 Lactuca sativa HOM05D000725 ORTHO05D003141 6.0e-07 58.9 41 58.5
EL10Ac9g21454 Beta vulgaris HOM05D000725 ORTHO05D003141 7.8e-07 58.5 37 59.5
BcaB08g34646 Brassica carinata HOM05D000725 ORTHO05D003141 7.8e-07 58.5 54 50.0
GSVIVG01023832001 Vitis vinifera HOM05D000725 ORTHO05D003141 1.3e-06 57.8 54 50.0
CARHR106640 Cardamine hirsuta HOM05D000725 ORTHO05D003141 1.7e-06 57.4 37 59.5
ATR0665G425 Amborella trichopoda HOM05D000725 ORTHO05D003141 2.3e-06 57.0 61 44.3
BcaC02g07841 Brassica carinata HOM05D000725 ORTHO05D003141 2.3e-06 57.0 197 25.9
A04p25600 Brassica napus HOM05D000725 ORTHO05D003141 5.0e-06 55.8 199 26.6
Thhalv10022532m.g Eutrema salsugineum HOM05D000725 ORTHO05D003141 5.0e-06 55.8 47 51.1
Sp4g15610 Schrenkiella parvula HOM05D000725 ORTHO05D003141 8.6e-06 55.1 233 24.5


User provided reference genes

Program Settings