Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.6e-161 572.8 315 100.0
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 3.2e-157 558.5 333 93.7
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 1.0e-134 483.8 336 81.5
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 2.7e-132 475.7 337 80.4
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.8e-131 473.0 337 79.8
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 5.2e-131 471.5 338 77.8
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 6.7e-131 471.1 337 79.2
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 8.8e-131 470.7 336 79.5
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 2.0e-130 469.5 338 79.3
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 2.6e-130 469.2 336 79.2
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 4.4e-130 468.4 337 74.5
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 7.5e-130 467.6 336 79.2
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 9.7e-130 467.2 337 79.5
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 1.7e-129 466.5 337 76.6
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 1.7e-129 466.5 337 78.6
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 2.2e-129 466.1 336 78.9
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 3.7e-129 465.3 336 78.0
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 8.2e-129 464.2 340 77.6
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 8.2e-129 464.2 337 78.9
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 3.1e-128 462.2 341 77.7
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 4.1e-128 461.8 336 78.6
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 7.0e-128 461.1 337 77.7
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 7.0e-128 461.1 336 76.5
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 7.0e-128 461.1 337 78.3
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 9.1e-128 460.7 337 78.3
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 9.1e-128 460.7 337 78.3
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 9.1e-128 460.7 337 78.3
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 9.1e-128 460.7 337 79.5
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 1.6e-127 459.9 352 75.3
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.6e-127 459.9 316 80.7
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 2.7e-127 459.1 339 77.3
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 3.5e-127 458.8 337 78.0
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 5.9e-127 458.0 338 77.2
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 5.9e-127 458.0 338 77.2
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 5.9e-127 458.0 336 77.4
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 7.7e-127 457.6 338 76.9
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.0e-126 457.2 337 77.7
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.3e-126 456.8 339 78.2
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 1.7e-126 456.4 336 79.5
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 1.7e-126 456.4 362 72.9
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 3.8e-126 455.3 337 77.4
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 5.0e-126 454.9 337 78.0
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 6.5e-126 454.5 337 78.0
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 1.1e-125 453.8 337 77.7
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.1e-125 453.8 337 77.2
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 1.5e-125 453.4 338 74.3
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 1.9e-125 453.0 349 75.6
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 1.9e-125 453.0 337 78.0
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 2.5e-125 452.6 338 76.3
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 4.2e-125 451.8 339 77.6
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 7.2e-125 451.1 337 76.6
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 1.6e-124 449.9 337 78.0
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 1.6e-124 449.9 337 78.0
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 2.7e-124 449.1 338 73.1
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 3.6e-124 448.7 337 77.7
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 3.6e-124 448.7 337 77.7
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 4.7e-124 448.4 335 75.8
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 4.7e-124 448.4 335 75.8
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 4.7e-124 448.4 339 77.3
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 6.1e-124 448.0 327 77.4
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 6.1e-124 448.0 338 73.4
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 8.0e-124 447.6 336 78.3
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 1.4e-123 446.8 336 76.2
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 1.4e-123 446.8 336 76.2
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 2.3e-123 446.0 337 75.7
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 3.0e-123 445.7 336 76.8
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 4.0e-123 445.3 336 77.1
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 4.0e-123 445.3 337 76.6
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 5.2e-123 444.9 340 76.2
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 6.8e-123 444.5 336 76.8
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 8.8e-123 444.1 336 76.2
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 1.5e-122 443.4 344 73.8
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 1.5e-122 443.4 337 76.0
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 2.6e-122 442.6 359 74.1
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 5.7e-122 441.4 340 75.9
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.3e-121 440.3 337 74.5
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 1.3e-121 440.3 355 73.0
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 1.3e-121 440.3 355 73.0
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 1.3e-121 440.3 321 78.5
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 2.2e-121 439.5 353 74.2
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 3.7e-121 438.7 336 74.4
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 1.1e-120 437.2 336 71.4
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 1.4e-120 436.8 337 75.1
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 2.4e-120 436.0 372 69.9
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 5.4e-120 434.9 347 73.2
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 2.0e-119 433.0 347 72.6
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 5.9e-119 431.4 363 69.7
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 2.9e-118 429.1 329 76.0
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 2.9e-118 429.1 340 71.5
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 5.0e-118 428.3 338 74.9
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 1.5e-117 426.8 337 74.5
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 1.5e-117 426.8 348 72.7
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 1.9e-117 426.4 337 73.3
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 3.2e-117 425.6 337 75.4
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 1.2e-116 423.7 331 74.9
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 4.7e-116 421.8 337 74.5
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 6.1e-116 421.4 321 76.9
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 6.1e-116 421.4 337 72.4
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.3e-115 419.5 325 76.3
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.3e-115 419.5 325 76.3
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 5.7e-114 414.8 377 66.8
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 7.5e-114 414.5 352 72.4
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 2.8e-113 412.5 321 75.4
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.8e-110 402.1 334 72.5
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 5.0e-110 401.7 305 78.0
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.0e-107 392.5 365 66.8
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.0e-107 392.5 365 66.8
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 3.4e-106 389.0 336 63.1
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 4.6e-103 378.6 284 77.8
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.9e-101 373.2 513 49.5
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 9.2e-96 354.4 334 67.7
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.5e-93 347.1 255 80.4
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 8.1e-92 341.3 330 66.7
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 2.3e-91 339.7 222 78.4
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 4.0e-91 339.0 259 78.8
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 2.3e-86 323.2 307 67.1
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 1.5e-82 310.5 316 64.6
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 4.6e-79 298.9 262 68.3
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.9e-78 295.8 334 59.0
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 5.2e-75 285.4 333 57.4
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 9.9e-74 281.2 383 44.9
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 1.1e-69 267.7 329 49.5
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 2.3e-62 243.4 147 81.0
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 8.7e-62 241.5 208 73.6
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 2.1e-55 220.3 159 72.3
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 3.7e-52 209.5 326 43.3
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 1.5e-45 187.6 165 66.7
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 4.6e-39 166.0 116 71.6
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 8.2e-36 155.2 95 85.3
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.1e-35 154.8 92 83.7
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 1.4e-32 144.4 90 83.3
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.7e-31 139.4 64 96.9
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.4e-19 100.5 45 100.0
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.8e-14 82.0 64 62.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 1.1e-11 75.1 41 90.2
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 1.8e-11 74.3 201 27.9
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 7.0e-11 72.4 41 82.9
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 9.1e-11 72.0 54 64.8
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.9e-09 67.0 87 63.2
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 2.9e-09 67.0 30 90.0
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.5e-08 64.7 200 27.0
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.3e-06 57.4 29 89.7


User provided reference genes

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