Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.2e-173 613.2 333 100.0
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.0e-157 559.3 333 93.7
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 5.8e-149 531.2 336 86.0
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 1.6e-146 523.1 337 84.9
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 7.8e-146 520.8 337 84.3
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 3.0e-145 518.8 337 84.0
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.0e-145 518.8 338 82.2
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 3.0e-145 518.8 337 79.8
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 5.1e-145 518.1 336 83.9
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 1.5e-144 516.5 336 83.6
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 1.9e-144 516.2 337 84.3
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 1.9e-144 516.2 338 83.4
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 2.5e-144 515.8 337 83.4
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 3.3e-144 515.4 336 83.6
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 4.3e-144 515.0 336 83.6
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 1.3e-143 513.5 337 81.3
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 2.1e-143 512.7 336 82.4
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 3.6e-143 511.9 337 83.7
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 4.8e-143 511.5 336 81.5
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 8.1e-143 510.8 340 81.8
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 1.1e-142 510.4 336 83.3
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 2.4e-142 509.2 352 79.8
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 3.1e-142 508.8 338 82.2
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 4.0e-142 508.4 339 82.0
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 5.3e-142 508.1 337 84.0
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 6.9e-142 507.7 337 82.5
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 6.9e-142 507.7 337 82.8
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 6.9e-142 507.7 337 82.8
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 6.9e-142 507.7 337 82.5
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 9.0e-142 507.3 337 82.2
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 9.0e-142 507.3 338 82.0
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 9.0e-142 507.3 338 82.0
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 9.0e-142 507.3 341 81.5
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.5e-141 506.5 337 82.8
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 2.6e-141 505.8 337 82.5
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 3.4e-141 505.4 336 81.8
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 9.9e-141 503.8 337 82.8
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 9.9e-141 503.8 338 81.7
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 1.3e-140 503.4 336 84.2
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.3e-140 503.4 339 82.3
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 1.3e-140 503.4 362 77.1
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 1.7e-140 503.1 338 79.3
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 1.7e-140 503.1 337 82.5
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 3.8e-140 501.9 338 81.7
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 3.8e-140 501.9 339 82.6
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.8e-140 501.9 337 81.6
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 4.9e-140 501.5 337 82.8
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 4.9e-140 501.5 337 81.9
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 6.4e-140 501.1 337 82.2
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 1.9e-139 499.6 335 81.2
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 1.9e-139 499.6 335 81.2
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 2.4e-139 499.2 327 82.9
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 3.2e-139 498.8 338 78.1
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 3.2e-139 498.8 337 82.8
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 3.2e-139 498.8 337 82.8
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 4.2e-139 498.4 339 82.3
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 7.1e-139 497.7 338 78.4
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 7.1e-139 497.7 337 82.5
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 7.1e-139 497.7 337 82.5
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 9.3e-139 497.3 337 81.0
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 2.7e-138 495.7 349 79.9
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 4.6e-138 495.0 336 82.7
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 6.0e-138 494.6 337 81.3
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 7.9e-138 494.2 340 80.9
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 1.0e-137 493.8 336 81.8
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 1.0e-137 493.8 336 81.2
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 1.3e-137 493.4 336 80.4
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 1.3e-137 493.4 336 80.4
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 1.8e-137 493.0 344 78.8
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 2.3e-137 492.7 337 80.7
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 3.9e-137 491.9 359 78.3
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 6.7e-137 491.1 336 81.2
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 8.7e-137 490.7 336 80.4
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 8.7e-137 490.7 340 80.6
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.5e-136 490.0 337 79.5
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 3.3e-136 488.8 355 77.2
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 3.3e-136 488.8 355 77.2
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 9.6e-136 487.3 321 83.2
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 1.3e-135 486.9 372 74.5
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 1.3e-135 486.9 353 78.5
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 2.1e-135 486.1 347 78.4
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 2.1e-135 486.1 337 79.8
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 8.1e-135 484.2 347 77.8
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 1.8e-134 483.0 336 76.2
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 6.9e-134 481.1 363 74.4
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 6.9e-134 481.1 337 78.9
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 2.6e-133 479.2 338 79.9
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 9.9e-133 477.2 340 76.2
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 1.7e-132 476.5 348 77.3
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 2.9e-132 475.7 329 80.2
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 4.9e-132 474.9 331 80.4
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 4.9e-132 474.9 337 78.9
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 6.4e-132 474.6 337 77.7
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 3.2e-131 472.2 321 82.2
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 5.5e-131 471.5 337 79.8
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 9.3e-131 470.7 337 79.2
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.0e-129 467.2 339 76.7
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.8e-129 466.5 325 80.6
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.8e-129 466.5 325 80.6
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 4.3e-128 461.8 321 80.4
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 7.4e-128 461.1 352 76.7
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 9.6e-128 460.7 377 69.8
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 3.4e-125 452.2 334 76.6
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.0e-124 450.7 334 76.9
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 1.0e-124 450.7 305 83.3
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.0e-121 440.7 365 71.0
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.0e-121 440.7 365 71.0
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 2.3e-121 439.5 336 68.5
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 1.0e-116 424.1 284 82.4
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.4e-115 420.2 513 53.0
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 9.1e-110 401.0 334 71.9
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 1.4e-105 387.1 222 85.6
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 9.7e-104 380.9 338 69.2
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 7.0e-102 374.8 274 79.6
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 1.1e-96 357.5 321 68.2
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 1.5e-96 357.1 316 69.3
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 2.6e-93 346.3 254 80.3
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.3e-92 344.0 334 63.5
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 2.7e-90 336.3 277 70.0
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 2.3e-89 333.2 333 61.9
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 1.1e-86 324.3 383 48.6
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 5.2e-81 305.4 329 52.6
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 1.0e-76 291.2 147 91.8
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 4.1e-62 242.7 177 70.6
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 9.2e-62 241.5 208 73.1
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 2.7e-61 240.0 326 46.3
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 6.6e-52 208.8 116 83.6
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 9.2e-46 188.3 165 67.3
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.7e-42 176.0 82 95.1
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 8.7e-36 155.2 95 85.3
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 5.6e-35 152.5 91 83.5
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 1.5e-32 144.4 90 83.3
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 1.6e-21 107.8 55 89.1
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 9.6e-19 98.6 64 81.2
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 7.6e-16 89.0 200 29.5
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 1.0e-15 88.6 201 27.9
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 7.1e-14 82.4 64 62.5
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 1.0e-12 78.6 39 87.2
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.7e-12 75.5 41 90.2
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 7.4e-11 72.4 54 64.8
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.8e-10 70.5 45 73.3
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.4e-09 68.2 89 61.8
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.1e-09 67.0 30 90.0


User provided reference genes

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