Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62005648 Chenopodium quinoa HOM05D005653 ORTHO05D007013 0.0e+00 1175.6 590 100.0
AUR62028902 Chenopodium quinoa HOM05D005653 ORTHO05D007013 8.4e-268 926.8 590 82.0
Cfa009387 Carpinus fangiana HOM05D005653 ORTHO05D007013 1.0e-225 786.9 589 67.9
RcHm_v2.0_Chr4g0429841 Rosa chinensis HOM05D005653 ORTHO05D007013 1.0e-225 786.9 589 67.7
Prupe.1G222900 Prunus persica HOM05D005653 ORTHO05D007013 1.5e-224 783.1 589 67.4
arahy.Tifrunner.gnm1.ann1.8E8WMD Arachis hypogaea HOM05D005653 ORTHO05D007013 7.5e-224 780.8 581 68.0
arahy.Tifrunner.gnm1.ann1.K5AHSV Arachis hypogaea HOM05D005653 ORTHO05D007013 7.5e-224 780.8 581 68.0
FvH4_4g23470 Fragaria vesca HOM05D005653 ORTHO05D007013 1.3e-223 780.0 586 67.1
QL03p051746 Quercus lobata HOM05D005653 ORTHO05D007013 1.7e-223 779.6 585 66.8
Sabra03G0123700 Salix brachista HOM05D005653 ORTHO05D007013 3.7e-223 778.5 614 65.3
TAR374G1158 Trochodendron aralioides HOM05D005653 ORTHO05D007013 3.7e-223 778.5 586 67.4
FAN07G0042 Fragaria x ananassa HOM05D005653 ORTHO05D007013 4.8e-223 778.1 586 66.9
MD13G1122300 Malus domestica HOM05D005653 ORTHO05D007013 5.3e-222 774.6 589 66.9
Manes.12G008600 Manihot esculenta HOM05D005653 ORTHO05D007013 9.1e-222 773.9 589 65.9
Thecc.02G202100 Theobroma cacao HOM05D005653 ORTHO05D007013 7.7e-221 770.8 586 68.1
Medtr7g022310 Medicago truncatula HOM05D005653 ORTHO05D007013 3.8e-220 768.5 589 66.4
Lsat_1_v5_gn_8_147520 Lactuca sativa HOM05D005653 ORTHO05D007013 8.5e-220 767.3 589 65.5
GSVIVG01010526001 Vitis vinifera HOM05D005653 ORTHO05D007013 1.1e-219 766.9 580 66.9
Eucgr.B03521 Eucalyptus grandis HOM05D005653 ORTHO05D007013 1.9e-219 766.1 586 66.2
PGR102G3026 Punica granatum HOM05D005653 ORTHO05D007013 2.5e-219 765.8 589 65.4
Ciclev10031168m.g Citrus clementina HOM05D005653 ORTHO05D007013 5.5e-219 764.6 586 65.7
Actinidia39799 Actinidia chinensis HOM05D005653 ORTHO05D007013 7.2e-219 764.2 589 65.4
Aqoxy5G03294 Aquilegia oxysepala HOM05D005653 ORTHO05D007013 7.2e-219 764.2 588 66.5
Psat3g188000 Pisum sativum HOM05D005653 ORTHO05D007013 2.1e-218 762.7 586 65.5
Glyma.02G097200 Glycine max HOM05D005653 ORTHO05D007013 3.6e-218 761.9 586 65.7
Glyma.18G284300 Glycine max HOM05D005653 ORTHO05D007013 4.7e-218 761.5 584 65.4
TWI18G0855 Tripterygium wilfordii HOM05D005653 ORTHO05D007013 8.0e-218 760.8 586 66.7
CSS0037525 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 1.0e-217 760.4 589 66.4
CSS0048785 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 1.0e-217 760.4 589 66.4
Lj3A1072T24 Lonicera japonica HOM05D005653 ORTHO05D007013 1.0e-217 760.4 588 65.8
PSO478G2696 Papaver somniferum HOM05D005653 ORTHO05D007013 1.0e-217 760.4 586 66.4
Ca_07130_v3 Cicer arietinum L. HOM05D005653 ORTHO05D007013 1.4e-217 760.0 587 65.4
FAN12G1333 Fragaria x ananassa HOM05D005653 ORTHO05D007013 2.3e-217 759.2 622 63.0
Potri.003G168800 Populus trichocarpa HOM05D005653 ORTHO05D007013 2.3e-217 759.2 588 65.6
Sabra01G0042500 Salix brachista HOM05D005653 ORTHO05D007013 4.0e-217 758.4 587 65.6
Gohir.D01G100300 Gossypium hirsutum HOM05D005653 ORTHO05D007013 5.2e-217 758.1 586 66.9
PSO017G4941 Papaver somniferum HOM05D005653 ORTHO05D007013 5.2e-217 758.1 586 65.9
Gorai.002G181300 Gossypium raimondii HOM05D005653 ORTHO05D007013 1.2e-216 756.9 586 66.7
Gohir.A01G153900 Gossypium hirsutum HOM05D005653 ORTHO05D007013 2.6e-216 755.7 586 66.4
HanXRQChr08g0209781 Helianthus annuus HOM05D005653 ORTHO05D007013 4.4e-216 755.0 589 65.0
VMungo1383G3612 Vigna mungo HOM05D005653 ORTHO05D007013 2.2e-215 752.7 584 64.4
MELO3C022321.2 Cucumis melo HOM05D005653 ORTHO05D007013 3.7e-215 751.9 586 65.4
THA.LOC104820527 Tarenaya hassleriana HOM05D005653 ORTHO05D007013 4.8e-215 751.5 582 64.4
ClCG06G002070 Citrullus lanatus HOM05D005653 ORTHO05D007013 1.1e-214 750.4 589 65.2
MBI11_g05337_MAGBIO Magnolia biondii HOM05D005653 ORTHO05D007013 1.4e-214 750.0 584 65.2
Lj1g0002640 Lotus japonicus HOM05D005653 ORTHO05D007013 7.0e-214 747.7 581 65.6
Dinv17587 Davidia involucrata HOM05D005653 ORTHO05D007013 2.0e-213 746.1 589 66.4
Rhsim12G0094700 Rhododendron simsii HOM05D005653 ORTHO05D007013 2.0e-213 746.1 584 65.1
Sed0008245 Sechium edule HOM05D005653 ORTHO05D007013 2.0e-213 746.1 589 64.7
DCAR_024662 Daucus carota HOM05D005653 ORTHO05D007013 2.7e-213 745.7 586 63.8
Migut.K01002 Erythranthe guttata HOM05D005653 ORTHO05D007013 1.0e-212 743.8 589 65.2
Solyc05g015860.4 Solanum lycopersicum HOM05D005653 ORTHO05D007013 2.2e-212 742.7 584 64.9
Lalb_Chr10g0092041 Lupinus albus HOM05D005653 ORTHO05D007013 3.8e-212 741.9 589 64.5
Aa31sc146G110 Aethionema arabicum HOM05D005653 ORTHO05D007013 2.5e-211 739.2 583 64.2
Haze_12446 Corylus avellana HOM05D005653 ORTHO05D007013 4.2e-211 738.4 589 65.0
Atru.BG.292.p Acer truncatum HOM05D005653 ORTHO05D007013 7.2e-211 737.6 570 67.4
C03p74690 Brassica napus HOM05D005653 ORTHO05D007013 7.2e-211 737.6 586 62.6
BraA08t34547Z Brassica rapa HOM05D005653 ORTHO05D007013 3.6e-210 735.3 586 62.5
BolC3t19717H Brassica oleracea HOM05D005653 ORTHO05D007013 5.7e-208 728.0 586 61.9
ECA233G0831 Erigeron canadensis HOM05D005653 ORTHO05D007013 7.5e-208 727.6 569 65.2
AT1G27980 Arabidopsis thaliana HOM05D005653 ORTHO05D007013 1.3e-207 726.9 583 62.6
Ah.03g135980 Amaranthus hybridus HOM05D005653 ORTHO05D007013 2.2e-207 726.1 640 62.3
Carub.0001s2643 Capsella rubella HOM05D005653 ORTHO05D007013 3.7e-207 725.3 583 62.3
AL1G41470 Arabidopsis lyrata HOM05D005653 ORTHO05D007013 6.3e-207 724.5 583 62.1
Thhalv10009378m.g Eutrema salsugineum HOM05D005653 ORTHO05D007013 6.3e-207 724.5 583 62.6
Cc11_g17180 Coffea canephora HOM05D005653 ORTHO05D007013 5.4e-206 721.5 586 64.2
Duzib268G1459 Durio zibethinus HOM05D005653 ORTHO05D007013 3.5e-205 718.8 586 64.7
Hund06105 Selenicereus undatus HOM05D005653 ORTHO05D007013 3.5e-205 718.8 646 59.6
A08p25960 Brassica napus HOM05D005653 ORTHO05D007013 4.5e-205 718.4 616 59.3
Nn4g22260 Nelumbo nucifera HOM05D005653 ORTHO05D007013 4.5e-205 718.4 619 62.0
Sp1g24170 Schrenkiella parvula HOM05D005653 ORTHO05D007013 2.9e-204 715.7 582 61.5
Peaxi162Scf00128g01533 Petunia axillaris HOM05D005653 ORTHO05D007013 6.6e-204 714.5 587 62.2
SalBow2G0115 Salvia bowleyana HOM05D005653 ORTHO05D007013 1.1e-203 713.8 588 62.2
PGSC0003DMG400019810 Solanum tuberosum HOM05D005653 ORTHO05D007013 1.5e-200 703.4 582 62.7
HPP92_006272 Vanilla planifolia HOM05D005653 ORTHO05D007013 3.4e-200 702.2 585 60.3
CDE05G3552 Ceratophyllum demersum HOM05D005653 ORTHO05D007013 4.6e-197 691.8 586 59.2
SEGI_37890 Sequoiadendron giganteum HOM05D005653 ORTHO05D007013 1.5e-195 686.8 586 58.0
unitig_26.g10407 Utricularia gibba HOM05D005653 ORTHO05D007013 3.6e-194 682.2 584 60.1
EL10Ac6g13536 Beta vulgaris HOM05D005653 ORTHO05D007013 2.2e-191 672.9 590 63.1
Os01g0100900 Oryza sativa ssp. japonica HOM05D005653 ORTHO05D007013 1.4e-190 670.2 580 60.5
CARHR027410 Cardamine hirsuta HOM05D005653 ORTHO05D007013 1.6e-189 666.8 548 61.5
Zm00001eb334070 Zea mays HOM05D005653 ORTHO05D007013 1.3e-183 647.1 626 56.5
Nitab4.5_0000340g0070 Nicotiana tabacum HOM05D005653 ORTHO05D007013 3.7e-183 645.6 580 58.8
vmacro16096 Vaccinium macrocarpon HOM05D005653 ORTHO05D007013 4.9e-183 645.2 611 57.0
SHI17985 Sapria himalayana HOM05D005653 ORTHO05D007013 5.4e-182 641.7 626 54.8
CANSAT01G0083 Cannabis sativa HOM05D005653 ORTHO05D007013 6.0e-181 638.3 619 57.7
Mapoly0064s0066 Marchantia polymorpha HOM05D005653 ORTHO05D007013 9.9e-176 620.9 588 54.3
CiPaw.05G107200 Carya illinoinensis HOM05D005653 ORTHO05D007013 1.9e-174 616.7 459 67.5
SMO117G0322 Selaginella moellendorffii HOM05D005653 ORTHO05D007013 3.1e-169 599.4 594 52.5
Phvul.008G017200 Phaseolus vulgaris HOM05D005653 ORTHO05D007013 6.9e-169 598.2 459 66.2
CsaV3_6G008140 Cucumis sativus L. HOM05D005653 ORTHO05D007013 2.6e-168 596.3 459 66.0
Sc04g0010280 Simmondsia chinensis HOM05D005653 ORTHO05D007013 7.6e-168 594.7 473 66.8
Pp3c25_6390 Physcomitrium patens HOM05D005653 ORTHO05D007013 1.1e-158 564.3 584 50.3
Sopen05g011500 Solanum pennellii HOM05D005653 ORTHO05D007013 3.7e-146 522.7 415 65.1
Atru.chr11.2357 Acer truncatum HOM05D005653 ORTHO05D007013 7.1e-142 508.4 323 76.5
COL.COLO4_05008 Corchorus olitorius HOM05D005653 ORTHO05D007013 1.2e-141 507.7 320 78.4
TPR.G2913 Trifolium pratense HOM05D005653 ORTHO05D007013 3.7e-138 496.1 323 72.8
CAN.G789.4 Capsicum annuum HOM05D005653 ORTHO05D007013 6.7e-132 475.3 315 72.7
CBR_g49954 Chara braunii HOM05D005653 ORTHO05D007013 7.7e-128 461.8 540 45.0
ATR0561G119 Amborella trichopoda HOM05D005653 ORTHO05D007013 1.4e-126 457.6 317 68.8
PRCOL_00004852 Prasinoderma coloniale HOM05D005653 ORTHO05D007013 2.7e-109 400.2 593 40.0
HanXRQChr08g0209891 Helianthus annuus HOM05D005653 ORTHO05D007013 9.1e-97 358.6 319 58.3
Cre03.g155051 Chlamydomonas reinhardtii HOM05D005653 ORTHO05D007013 1.4e-92 344.7 603 35.7
MCO01G158 Micromonas commoda HOM05D005653 ORTHO05D007013 1.4e-92 344.7 532 39.8
SGA_v2.0_scaffold46G17389 Striga asiatica HOM05D005653 ORTHO05D007013 1.8e-89 334.3 241 67.2
COL.COLO4_05009 Corchorus olitorius HOM05D005653 ORTHO05D007013 5.6e-78 296.2 177 79.7
Cfa025335 Carpinus fangiana HOM05D005653 ORTHO05D007013 6.2e-77 292.7 549 34.6
CAN.G789.3 Capsicum annuum HOM05D005653 ORTHO05D007013 1.4e-73 281.6 173 75.7
Haze_26914 Corylus avellana HOM05D005653 ORTHO05D007013 2.4e-73 280.8 573 32.6
ATR0561G080 Amborella trichopoda HOM05D005653 ORTHO05D007013 9.5e-70 268.9 173 72.3
Actinidia34022 Actinidia chinensis HOM05D005653 ORTHO05D007013 2.6e-67 260.8 256 53.9
SGA_v2.0_scaffold46G17390 Striga asiatica HOM05D005653 ORTHO05D007013 7.1e-57 226.1 153 69.9
Cpa.g.c35206 Carica papaya HOM05D005653 ORTHO05D007013 3.2e-49 200.7 145 65.5
Sc02g0005360 Simmondsia chinensis HOM05D005653 ORTHO05D007013 2.5e-38 164.5 99 79.8
Sc02g0005380 Simmondsia chinensis HOM05D005653 ORTHO05D007013 8.1e-37 159.5 99 77.8
BcaC05g26610 Brassica carinata HOM05D005653 ORTHO05D007013 5.6e-30 136.7 378 31.2
Hma1.2p1_0862F.1_g229925 Hydrangea macrophylla HOM05D005653 ORTHO05D007013 4.0e-28 130.6 104 64.4
C05p26600 Brassica napus HOM05D005653 ORTHO05D007013 2.6e-27 127.9 329 33.1
Potri.001G059001 Populus trichocarpa HOM05D005653 ORTHO05D007013 7.1e-25 119.8 75 73.3
Nn1g00005 Nelumbo nucifera HOM05D005653 ORTHO05D007013 1.1e-20 105.9 58 77.6
Nn1g02921 Nelumbo nucifera HOM05D005653 ORTHO05D007013 1.1e-20 105.9 58 77.6
A09p38200 Brassica napus HOM05D005653 ORTHO05D007013 1.9e-14 85.1 68 60.3
BraA09t39333Z Brassica rapa HOM05D005653 ORTHO05D007013 3.7e-13 80.9 95 46.3
Oeu050735.1 Olea europaea HOM05D005653 ORTHO05D007013 8.2e-13 79.7 79 49.4
MD15G1195400 Malus domestica HOM05D002350 ORTHO05D000091 6.9e-12 76.6 80 50.0
Sc02g0005350 Simmondsia chinensis HOM05D005653 ORTHO05D007013 1.7e-10 72.0 56 66.1
Sc02g0005370 Simmondsia chinensis HOM05D005653 ORTHO05D007013 2.9e-10 71.2 55 67.3
MELO3C032670.2 Cucumis melo HOM05D011747 ORTHO05D007013 5.0e-10 70.5 48 64.6
RcHm_v2.0_Chr4g0396231 Rosa chinensis HOM05D005653 ORTHO05D007013 1.1e-09 69.3 87 46.0
BolC5t31379H Brassica oleracea HOM05D005653 ORTHO05D007013 2.5e-09 68.2 52 63.5
MELO3C031393.2 Cucumis melo HOM05D005653 ORTHO05D005467 2.5e-09 68.2 47 63.8
Actinidia18467 Actinidia chinensis HOM05D005653 ORTHO05D007013 2.7e-08 64.7 89 44.9
CARHR035100 Cardamine hirsuta HOM05D005653 ORTHO05D007013 3.6e-08 64.3 32 93.8
Actinidia40343 Actinidia chinensis HOM05D000263 ORTHO05D010929 6.1e-08 63.5 74 44.6
Pp3c8_7810 Physcomitrium patens HOM05D001138 ORTHO05D001015 6.1e-08 63.5 434 21.2
CARHR229380 Cardamine hirsuta HOM05D005653 ORTHO05D007013 1.8e-07 62.0 53 50.9
Actinidia18655 Actinidia chinensis HOM05D005653 ORTHO05D007013 2.3e-07 61.6 46 65.2
Actinidia35048 Actinidia chinensis HOM05D000945 ORTHO05D056219 5.7e-06 57.0 59 55.9


User provided reference genes

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