Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.0e-211 738.8 361 100.0
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 3.4e-179 631.7 359 84.1
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 2.9e-146 522.3 357 70.9
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 7.0e-140 501.1 359 68.0
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 2.7e-139 499.2 321 75.7
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 8.5e-138 494.2 365 66.6
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 1.6e-136 490.0 361 66.8
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 1.8e-135 486.5 352 67.9
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 2.3e-135 486.1 353 68.3
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 2.3e-135 486.1 352 67.0
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 4.0e-135 485.3 353 66.6
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 6.8e-135 484.6 357 66.1
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.5e-134 483.4 359 65.7
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 4.4e-134 481.9 371 65.0
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 5.7e-134 481.5 354 67.5
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.8e-133 479.2 366 65.8
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 1.8e-132 476.5 358 65.9
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 3.1e-132 475.7 356 65.7
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 3.1e-132 475.7 357 65.0
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 2.7e-131 472.6 370 63.2
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 3.5e-131 472.2 354 68.1
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 4.5e-131 471.9 354 64.7
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 5.9e-131 471.5 352 65.3
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 5.0e-130 468.4 359 63.5
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 5.0e-130 468.4 358 64.0
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 6.5e-130 468.0 353 64.3
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 1.9e-129 466.5 354 64.1
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 2.5e-129 466.1 353 66.0
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 3.2e-129 465.7 353 65.2
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 5.5e-129 464.9 355 63.9
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.2e-128 463.8 355 63.4
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 1.6e-128 463.4 355 63.9
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 1.6e-128 463.4 354 63.8
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 4.7e-128 461.8 358 62.8
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 4.7e-128 461.8 352 61.9
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.4e-127 460.3 356 62.4
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 4.0e-127 458.8 358 64.0
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 5.2e-127 458.4 356 62.9
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 3.4e-126 455.7 349 62.8
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 4.4e-126 455.3 355 63.1
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 4.4e-126 455.3 353 62.9
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 7.5e-126 454.5 355 63.4
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 7.5e-126 454.5 405 56.8
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 1.7e-125 453.4 354 63.0
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.7e-125 453.4 360 61.7
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 3.7e-125 452.2 355 63.9
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 4.9e-125 451.8 355 62.8
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 4.1e-124 448.7 354 62.1
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 4.1e-124 448.7 356 61.5
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 9.2e-124 447.6 354 61.9
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 1.2e-123 447.2 355 61.7
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 2.7e-123 446.0 355 61.4
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 4.5e-123 445.3 326 64.7
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 5.9e-123 444.9 353 61.8
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 5.9e-123 444.9 350 61.4
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 5.9e-123 444.9 428 54.7
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 5.9e-123 444.9 354 62.7
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 1.7e-122 443.4 352 62.5
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 2.9e-122 442.6 362 59.4
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 2.9e-122 442.6 353 62.0
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 2.9e-122 442.6 353 62.0
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 3.8e-122 442.2 347 63.7
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 8.6e-122 441.0 353 60.6
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 1.1e-121 440.7 351 61.0
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 1.1e-121 440.7 351 62.4
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 2.5e-121 439.5 350 60.6
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 5.6e-121 438.3 352 61.9
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 9.5e-121 437.6 351 61.0
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 2.1e-120 436.4 426 53.8
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 2.1e-120 436.4 362 58.8
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 2.8e-120 436.0 350 60.3
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 2.8e-120 436.0 350 60.6
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 2.8e-120 436.0 367 61.0
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 4.7e-120 435.3 354 61.3
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 8.0e-120 434.5 351 60.7
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 8.0e-120 434.5 484 49.6
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 2.3e-119 433.0 350 59.7
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 3.0e-119 432.6 351 61.0
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 3.0e-119 432.6 351 60.1
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 3.0e-119 432.6 351 60.1
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 5.2e-119 431.8 350 60.9
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 2.0e-118 429.9 352 59.7
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 2.0e-118 429.9 350 60.0
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 5.7e-118 428.3 351 60.4
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 2.9e-117 426.0 355 60.3
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 2.9e-117 426.0 355 61.1
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 3.7e-117 425.6 355 60.3
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 8.3e-117 424.5 364 59.3
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 5.4e-116 421.8 359 60.2
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 7.0e-116 421.4 361 59.8
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 7.0e-116 421.4 352 61.1
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 5.9e-115 418.3 213 93.4
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 1.3e-114 417.2 322 64.9
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 5.0e-114 415.2 354 59.3
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 1.1e-113 414.1 399 54.6
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 6.6e-106 388.3 353 57.5
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 2.5e-105 386.3 298 63.4
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 9.5e-105 384.4 346 53.8
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 1.2e-104 384.0 357 53.2
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 1.8e-103 380.2 367 53.7
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 1.2e-102 377.5 389 49.4
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 3.4e-102 375.9 359 56.0
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 7.5e-102 374.8 264 66.3
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 1.4e-100 370.5 287 59.9
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 7.8e-99 364.8 364 50.3
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 2.5e-97 359.8 354 53.7
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 8.4e-93 344.7 246 68.7
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 1.2e-91 340.9 293 59.4
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 7.6e-86 321.6 289 56.7
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 2.4e-84 316.6 205 73.2
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 7.8e-83 311.6 419 40.3
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.6e-75 287.3 411 37.5
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 1.0e-74 284.6 364 40.4
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 3.3e-73 279.6 154 80.5
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 4.3e-73 279.3 359 43.5
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 4.8e-72 275.8 375 37.9
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 5.8e-62 242.3 228 56.6
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 5.5e-60 235.7 132 81.1
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.1e-57 228.0 128 77.3
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 6.9e-55 218.8 119 91.6
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 1.6e-51 207.6 259 43.6
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.6e-51 207.6 259 43.6
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 2.4e-39 167.2 175 52.6
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 2.9e-37 160.2 83 86.7
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 8.5e-37 158.7 131 51.9
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 8.5e-37 158.7 201 44.3
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 8.5e-37 158.7 201 44.3
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 2.6e-33 147.1 203 44.3
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 1.2e-25 121.7 75 74.7
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 7.7e-22 109.0 119 52.1
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 3.2e-20 103.6 124 46.0
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 5.2e-18 96.3 202 31.2
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.2e-12 77.0 94 47.9


User provided reference genes

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