Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004519 Chenopodium quinoa HOM05D003441 ORTHO05D004516 3.4e-211 738.0 359 100.0
AUR62010445 Chenopodium quinoa HOM05D003441 ORTHO05D004516 1.5e-89 334.0 546 42.1
AUR62030470 Chenopodium quinoa HOM05D003441 ORTHO05D004516 1.9e-89 333.6 546 42.1
Ciclev10019088m.g Citrus clementina HOM05D003441 ORTHO05D004516 5.6e-81 305.4 479 42.8
Ah.12g058870 Amaranthus hybridus HOM05D003441 ORTHO05D004516 1.6e-80 303.9 537 39.5
Actinidia28364 Actinidia chinensis HOM05D003441 ORTHO05D004516 4.7e-80 302.4 504 40.9
RcHm_v2.0_Chr7g0197061 Rosa chinensis HOM05D003441 ORTHO05D004516 1.1e-79 301.2 503 41.2
TWI81G0502 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 3.1e-79 299.7 508 41.1
Nitab4.5_0001522g0040 Nicotiana tabacum HOM05D003441 ORTHO05D004516 5.2e-79 298.9 503 41.2
Cc08_g15010 Coffea canephora HOM05D003441 ORTHO05D004516 8.9e-79 298.1 502 41.0
FAN13G0786 Fragaria x ananassa HOM05D003441 ORTHO05D004516 8.9e-79 298.1 503 41.2
CSS0029160 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 1.2e-78 297.7 503 41.0
CSS0043381 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 1.2e-78 297.7 503 41.0
Gohir.D03G149600 Gossypium hirsutum HOM05D003441 ORTHO05D004516 2.0e-78 297.0 504 41.5
Atru.chr9.2153 Acer truncatum HOM05D003441 ORTHO05D004516 2.6e-78 296.6 506 41.1
CAN.G532.8 Capsicum annuum HOM05D003441 ORTHO05D004516 2.6e-78 296.6 502 41.2
FvH4_5g02840 Fragaria vesca HOM05D003441 ORTHO05D004516 2.6e-78 296.6 503 41.0
FAN04G2979 Fragaria x ananassa HOM05D003441 ORTHO05D004516 2.6e-78 296.6 503 41.0
FAN08G0848 Fragaria x ananassa HOM05D003441 ORTHO05D004516 2.6e-78 296.6 503 41.0
TPR.G12826 Trifolium pratense HOM05D003441 ORTHO05D004516 2.6e-78 296.6 501 40.9
Solyc08g081340.4 Solanum lycopersicum HOM05D003441 ORTHO05D004516 4.4e-78 295.8 501 41.3
Sopen08g029660 Solanum pennellii HOM05D003441 ORTHO05D004516 4.4e-78 295.8 501 41.3
TWI15G1061 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 7.5e-78 295.0 505 40.6
CANSAT25G0732 Cannabis sativa HOM05D003441 ORTHO05D004516 9.9e-78 294.7 507 40.8
Prupe.5G104000 Prunus persica HOM05D003441 ORTHO05D004516 1.3e-77 294.3 503 41.4
MSTRG.11971 Avicennia marina HOM05D003441 ORTHO05D004516 1.7e-77 293.9 502 40.6
Duzib205G0291 Durio zibethinus HOM05D003441 ORTHO05D004516 1.7e-77 293.9 504 40.5
Peaxi162Scf00074g02032 Petunia axillaris HOM05D003441 ORTHO05D004516 1.7e-77 293.9 504 40.9
THA.LOC104817891 Tarenaya hassleriana HOM05D003441 ORTHO05D004516 1.7e-77 293.9 505 40.6
GSVIVG01019392001 Vitis vinifera HOM05D003441 ORTHO05D004516 1.7e-77 293.9 504 40.9
Medtr8g098675 Medicago truncatula HOM05D003441 ORTHO05D004516 2.2e-77 293.5 502 40.2
TWI15G1203 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 2.2e-77 293.5 505 40.2
MELO3C005694.2 Cucumis melo HOM05D003441 ORTHO05D004516 4.9e-77 292.4 506 40.3
Dinv37619 Davidia involucrata HOM05D003441 ORTHO05D004516 4.9e-77 292.4 506 40.5
MD06G1087900 Malus domestica HOM05D003441 ORTHO05D004516 4.9e-77 292.4 505 41.2
Lalb_Chr05g0224631 Lupinus albus HOM05D003441 ORTHO05D004516 6.4e-77 292.0 502 40.2
VMungo0251G2080 Vigna mungo HOM05D003441 ORTHO05D004516 6.4e-77 292.0 502 40.0
Migut.E01191 Erythranthe guttata HOM05D003441 ORTHO05D004516 8.3e-77 291.6 504 40.5
Manes.02G021700 Manihot esculenta HOM05D003441 ORTHO05D004516 8.3e-77 291.6 502 40.6
Lalb_Chr16g0390181 Lupinus albus HOM05D003441 ORTHO05D004516 1.9e-76 290.4 502 40.0
Thecc.03G282800 Theobroma cacao HOM05D003441 ORTHO05D004516 1.9e-76 290.4 504 40.7
Eucgr.E00638 Eucalyptus grandis HOM05D003441 ORTHO05D004516 2.4e-76 290.0 504 40.1
Lj2C182G1 Lonicera japonica HOM05D003441 ORTHO05D004516 2.4e-76 290.0 504 39.9
Glyma.05G209700 Glycine max HOM05D003441 ORTHO05D004516 3.2e-76 289.7 502 39.6
Cfa012202 Carpinus fangiana HOM05D003441 ORTHO05D004516 4.1e-76 289.3 504 40.1
Nn6g33339 Nelumbo nucifera HOM05D003441 ORTHO05D004516 4.1e-76 289.3 480 40.6
CsaV3_5G002620 Cucumis sativus L. HOM05D003441 ORTHO05D004516 5.4e-76 288.9 506 39.9
Gorai.007G023800 Gossypium raimondii HOM05D003441 ORTHO05D004516 5.4e-76 288.9 504 40.7
QL12p032410 Quercus lobata HOM05D003441 ORTHO05D004516 5.4e-76 288.9 504 40.5
Psat7g031680 Pisum sativum HOM05D003441 ORTHO05D004516 7.1e-76 288.5 502 40.2
Sed0019074 Sechium edule HOM05D003441 ORTHO05D004516 7.1e-76 288.5 506 39.9
CiPaw.12G091100 Carya illinoinensis HOM05D003441 ORTHO05D004516 9.2e-76 288.1 505 40.2
arahy.Tifrunner.gnm1.ann1.5RI6ER Arachis hypogaea HOM05D003441 ORTHO05D004516 1.2e-75 287.7 502 40.0
arahy.Tifrunner.gnm1.ann1.75Q964 Arachis hypogaea HOM05D003441 ORTHO05D004516 1.2e-75 287.7 502 40.0
ClCG01G002520 Citrullus lanatus HOM05D003441 ORTHO05D004516 1.2e-75 287.7 502 40.0
Sabra01G0076300 Salix brachista HOM05D003441 ORTHO05D004516 1.2e-75 287.7 504 39.7
SalBow1G4213 Salvia bowleyana HOM05D003441 ORTHO05D004516 1.2e-75 287.7 502 40.2
Phvul.002G291500 Phaseolus vulgaris HOM05D003441 ORTHO05D004516 1.6e-75 287.3 502 40.2
Cpa.g.sc180.13 Carica papaya HOM05D003441 ORTHO05D004516 2.1e-75 287.0 503 40.2
Potri.001G101300 Populus trichocarpa HOM05D003441 ORTHO05D004516 2.1e-75 287.0 502 40.0
Aa31LG5G13590 Aethionema arabicum HOM05D003441 ORTHO05D004516 2.7e-75 286.6 504 39.7
Ca_10937_v3 Cicer arietinum L. HOM05D003441 ORTHO05D004516 2.7e-75 286.6 502 39.8
Gohir.A11G022800 Gossypium hirsutum HOM05D003441 ORTHO05D004516 2.7e-75 286.6 504 40.3
Lj4g0015025 Lotus japonicus HOM05D003441 ORTHO05D004516 3.5e-75 286.2 502 40.0
PGR042G0359 Punica granatum HOM05D003441 ORTHO05D004516 7.8e-75 285.0 502 40.2
COL.COLO4_34498 Corchorus olitorius HOM05D003441 ORTHO05D004516 1.0e-74 284.6 502 39.4
ECA246G2088 Erigeron canadensis HOM05D003441 ORTHO05D004516 1.3e-74 284.3 506 39.5
AL7G48050 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 1.7e-74 283.9 505 39.6
Glyma.08G016400 Glycine max HOM05D003441 ORTHO05D004516 2.3e-74 283.5 502 39.4
AT5G41370 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 3.0e-74 283.1 505 39.6
MBI04_g41820_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 3.9e-74 282.7 504 39.7
TAR636G0201 Trochodendron aralioides HOM05D003441 ORTHO05D004516 3.9e-74 282.7 506 39.9
Gorai.003G156900 Gossypium raimondii HOM05D003441 ORTHO05D004516 5.1e-74 282.3 530 39.4
Gohir.A03G019400 Gossypium hirsutum HOM05D003441 ORTHO05D004516 8.6e-74 281.6 526 39.7
AL7G48070 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 1.5e-73 280.8 503 39.2
HanXRQChr17g0533461 Helianthus annuus HOM05D003441 ORTHO05D004516 1.5e-73 280.8 506 39.5
ATR0661G194 Amborella trichopoda HOM05D003441 ORTHO05D004516 2.5e-73 280.0 510 38.6
HPP92_021979 Vanilla planifolia HOM05D003441 ORTHO05D004516 3.3e-73 279.6 504 38.9
A04p14500 Brassica napus HOM05D003441 ORTHO05D004516 4.3e-73 279.3 504 38.7
C04p48400 Brassica napus HOM05D003441 ORTHO05D004516 4.3e-73 279.3 504 38.7
BolC4t26434H Brassica oleracea HOM05D003441 ORTHO05D004516 4.3e-73 279.3 504 38.7
BraA04t17095Z Brassica rapa HOM05D003441 ORTHO05D004516 4.3e-73 279.3 504 38.7
HanXRQChr06g0165951 Helianthus annuus HOM05D003441 ORTHO05D004516 5.6e-73 278.9 506 39.5
BcaC02g08964 Brassica carinata HOM05D003441 ORTHO05D004516 7.3e-73 278.5 504 38.5
BcaB06g27616 Brassica carinata HOM05D003441 ORTHO05D004516 1.2e-72 277.7 504 38.7
Lsat_1_v5_gn_3_6121 Lactuca sativa HOM05D003441 ORTHO05D004516 1.2e-72 277.7 506 38.9
CDE12G0607 Ceratophyllum demersum HOM05D003441 ORTHO05D004516 1.6e-72 277.3 504 39.3
AT5G41360 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 3.6e-72 276.2 504 39.1
Carub.0007s3412 Capsella rubella HOM05D003441 ORTHO05D004516 8.1e-72 275.0 504 38.9
Nitab4.5_0001220g0100 Nicotiana tabacum HOM05D003441 ORTHO05D004516 2.4e-71 273.5 497 39.2
PSO478G5020 Papaver somniferum HOM05D003441 ORTHO05D004516 5.2e-71 272.3 503 39.4
Oeu030097.4 Olea europaea HOM05D003441 ORTHO05D004516 6.8e-71 271.9 545 36.9
PGSC0003DMG400012332 Solanum tuberosum HOM05D003441 ORTHO05D004516 1.2e-70 271.2 472 40.3
Haze_08814 Corylus avellana HOM05D003441 ORTHO05D004516 1.5e-70 270.8 468 39.7
EL10Ac5g12531 Beta vulgaris HOM05D003441 ORTHO05D004516 2.6e-70 270.0 497 39.0
BcaB02g07896 Brassica carinata HOM05D003441 ORTHO05D004516 3.4e-70 269.6 502 38.0
Sp7g00580 Schrenkiella parvula HOM05D003441 ORTHO05D004516 5.8e-70 268.9 504 38.5
SpUn0010_0060 Schrenkiella parvula HOM05D003441 ORTHO05D004516 5.8e-70 268.9 504 38.5
A07p20760 Brassica napus HOM05D003441 ORTHO05D004516 7.6e-70 268.5 509 37.9
BraA07t29768Z Brassica rapa HOM05D003441 ORTHO05D004516 7.6e-70 268.5 509 37.9
Aqoxy1G00680 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 1.3e-69 267.7 504 38.1
Nitab4.5_0004114g0020 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.7e-69 267.3 474 40.1
Hund10975 Selenicereus undatus HOM05D003441 ORTHO05D004516 3.8e-69 266.2 473 39.7
Rhsim02G0234100 Rhododendron simsii HOM05D003441 ORTHO05D004516 4.9e-69 265.8 560 36.8
Nitab4.5_0002290g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 6.4e-69 265.4 507 38.1
Duzib084G0223 Durio zibethinus HOM05D003441 ORTHO05D004516 2.4e-68 263.5 487 38.6
Carub.0007s3411 Capsella rubella HOM05D003441 ORTHO05D004516 5.4e-68 262.3 504 37.9
SGA_v2.0_scaffold144G35916 Striga asiatica HOM05D003441 ORTHO05D004516 7.1e-68 261.9 503 38.8
DCAR_005566 Daucus carota HOM05D003441 ORTHO05D004516 9.2e-68 261.5 473 38.9
Thhalv10027651m.g Eutrema salsugineum HOM05D003441 ORTHO05D004516 9.2e-68 261.5 510 37.5
Lj8A218G25 Lonicera japonica HOM05D003441 ORTHO05D004516 2.7e-67 260.0 472 38.6
CARHR212960 Cardamine hirsuta HOM05D003441 ORTHO05D004516 1.3e-66 257.7 504 37.7
FvH4_7g07850 Fragaria vesca HOM05D003441 ORTHO05D004516 1.3e-66 257.7 471 38.4
Nitab4.5_0004008g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.1e-65 254.6 512 37.1
AagrBONN_evm.TU.Sc2ySwM_368.2338 Anthoceros agrestis HOM05D003441 ORTHO05D004516 3.3e-65 253.1 502 36.7
Aqoxy5G02024 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 2.1e-64 250.4 506 37.0
PGSC0003DMG400026783 Solanum tuberosum HOM05D003441 ORTHO05D004516 4.0e-63 246.1 509 35.4
FAN01G0379 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.5e-62 244.2 476 37.6
HPP92_022012 Vanilla planifolia HOM05D003441 ORTHO05D004516 7.6e-62 241.9 468 36.8
SMO347G0324 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 4.2e-60 236.1 501 35.1
FAN18G3267 Fragaria x ananassa HOM05D003441 ORTHO05D004516 9.3e-60 235.0 312 45.5
Mapoly0037s0100 Marchantia polymorpha HOM05D003441 ORTHO05D004516 1.2e-59 234.6 504 35.3
SMO115G0252 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 3.5e-59 233.0 502 35.1
FAN10G3500 Fragaria x ananassa HOM05D003441 ORTHO05D004516 3.0e-58 229.9 512 33.2
Sc07g0009820 Simmondsia chinensis HOM05D003441 ORTHO05D004516 3.0e-58 229.9 312 45.2
Pp3c6_13890 Physcomitrium patens HOM05D003441 ORTHO05D004516 2.5e-57 226.9 509 35.6
PSO017G3334 Papaver somniferum HOM05D003441 ORTHO05D004516 7.3e-57 225.3 503 34.6
PSO421G0274 Papaver somniferum HOM05D003441 ORTHO05D004516 7.3e-57 225.3 503 34.6
AUR62022736 Chenopodium quinoa HOM05D003441 ORTHO05D004516 1.3e-56 224.6 358 43.0
C06p19750 Brassica napus HOM05D003441 ORTHO05D004516 4.0e-55 219.5 441 36.7
FAN03G2549 Fragaria x ananassa HOM05D003441 ORTHO05D004516 2.6e-54 216.9 509 33.6
SEGI_31025 Sequoiadendron giganteum HOM05D003441 ORTHO05D004516 3.4e-54 216.5 311 43.4
CARHR183180 Cardamine hirsuta HOM05D003441 ORTHO05D004516 5.8e-54 215.7 307 43.0
RcHm_v2.0_Chr1g0341861 Rosa chinensis HOM05D003441 ORTHO05D004516 5.8e-54 215.7 543 33.1
FAN06G2516 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.3e-53 214.5 521 33.4
Os01g0691600 Oryza sativa ssp. japonica HOM05D003441 ORTHO05D004516 2.9e-53 213.4 312 42.3
FvH4_7g08220 Fragaria vesca HOM05D003441 ORTHO05D004516 3.8e-53 213.0 312 42.0
ECA246G1863 Erigeron canadensis HOM05D003441 ORTHO05D004516 3.5e-51 206.5 506 33.8
Zm00001eb156220 Zea mays HOM05D003441 ORTHO05D004516 1.0e-50 204.9 312 41.7
BcaC08g44524 Brassica carinata HOM05D003441 ORTHO05D004516 1.8e-47 194.1 390 36.9
BolC6t37164H Brassica oleracea HOM05D003441 ORTHO05D004516 1.7e-45 187.6 390 35.9
RcHm_v2.0_Chr1g0341621 Rosa chinensis HOM05D003441 ORTHO05D004516 9.3e-44 181.8 318 39.0
Gohir.D11G022333 Gossypium hirsutum HOM05D003441 ORTHO05D004516 6.0e-43 179.1 168 60.7
CBR_g34305 Chara braunii HOM05D003441 ORTHO05D004516 3.0e-42 176.8 465 32.5
Lsat_1_v5_gn_2_120601 Lactuca sativa HOM05D003441 ORTHO05D004516 3.0e-42 176.8 231 44.2
Cre06.g297016 Chlamydomonas reinhardtii HOM05D003441 ORTHO05D004516 1.5e-41 174.5 312 36.9
PRCOL_00001151 Prasinoderma coloniale HOM05D003441 ORTHO05D004516 1.5e-41 174.5 509 29.5
SHI07186 Sapria himalayana HOM05D003441 ORTHO05D004516 1.5e-41 174.5 167 55.1
unitig_62.g23538 Utricularia gibba HOM05D003441 ORTHO05D004516 1.5e-41 174.5 167 56.3
SalBow1G5824 Salvia bowleyana HOM05D003441 ORTHO05D004516 4.3e-41 172.9 176 54.0
FAN13G0171 Fragaria x ananassa HOM05D003441 ORTHO05D004516 2.9e-37 160.2 300 36.7
Gohir.D11G022366 Gossypium hirsutum HOM05D003441 ORTHO05D004516 4.6e-35 152.9 248 44.0
unitig_62.g23537 Utricularia gibba HOM05D003441 ORTHO05D004516 4.6e-35 152.9 263 39.9
FAN08G2634 Fragaria x ananassa HOM05D003441 ORTHO05D004516 6.1e-35 152.5 319 34.2
RcHm_v2.0_Chr7g0203931 Rosa chinensis HOM05D003441 ORTHO05D004516 1.0e-34 151.8 315 34.6
MCO01G486 Micromonas commoda HOM05D003441 ORTHO05D004516 8.7e-34 148.7 313 32.6
Lsat_1_v5_gn_2_120581 Lactuca sativa HOM05D003441 ORTHO05D004516 2.2e-32 144.1 255 38.4
FAN18G4545 Fragaria x ananassa HOM05D003441 ORTHO05D004516 4.1e-31 139.8 244 38.1
Haze_26458 Corylus avellana HOM05D003441 ORTHO05D004516 1.0e-29 135.2 310 30.0
QL02p047919 Quercus lobata HOM05D003441 ORTHO05D004516 5.0e-29 132.9 86 72.1
QL02p047967 Quercus lobata HOM05D003441 ORTHO05D004516 6.5e-29 132.5 86 70.9
FAN04G2533 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.9e-28 131.0 311 32.2
FAN06G0185 Fragaria x ananassa HOM05D003441 ORTHO05D004516 9.4e-28 128.6 250 39.6
CAN.G8.43 Capsicum annuum HOM05D000808 ORTHO05D001769 3.6e-27 126.7 134 56.0
Cfa023957 Carpinus fangiana HOM05D003441 ORTHO05D004516 3.9e-26 123.2 315 28.9
SEGI_12688 Sequoiadendron giganteum HOM05D003441 ORTHO05D000001 1.9e-20 104.4 209 37.8
SEGI_39024 Sequoiadendron giganteum HOM05D003441 ORTHO05D004516 4.7e-19 99.8 166 34.9
Gohir.A01G154260 Gossypium hirsutum HOM05D003441 ORTHO05D046774 5.7e-17 92.8 57 77.2
Glyma.18G257500 Glycine max HOM05D003441 ORTHO05D046774 2.8e-16 90.5 55 76.4
BolC6t37163H Brassica oleracea HOM05D003441 ORTHO05D004516 7.7e-14 82.4 109 44.0
SHI07185 Sapria himalayana HOM05D000105 ORTHO05D000023 7.7e-14 82.4 56 67.9
RcHm_v2.0_Chr1g0341611 Rosa chinensis HOM05D003441 ORTHO05D004516 2.2e-13 80.9 149 38.3
FvH4_5g19420 Fragaria vesca HOM05D003441 ORTHO05D004516 5.0e-13 79.7 130 37.7
CAN.G1569.25 Capsicum annuum HOM05D000808 ORTHO05D000863 6.5e-13 79.3 52 73.1
MBI04_g35068_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 2.8e-08 63.9 97 41.2
BcaC08g44523 Brassica carinata HOM05D003441 ORTHO05D004516 4.8e-08 63.2 97 40.2


User provided reference genes

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