Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 5.5e-113 411.0 208 100.0
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 3.9e-103 378.3 264 77.7
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 2.9e-98 362.1 208 87.0
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 2.5e-89 332.4 220 77.7
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.2e-83 313.5 207 74.9
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 2.7e-80 302.4 235 66.0
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 2.7e-75 285.8 208 67.8
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 1.7e-74 283.1 209 70.3
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 8.5e-74 280.8 205 70.7
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 1.5e-73 280.0 219 65.3
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 9.4e-73 277.3 212 67.9
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 1.2e-72 276.9 212 68.4
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 1.2e-72 276.9 210 69.5
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 2.1e-72 276.2 219 63.5
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 4.7e-72 275.0 218 65.1
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 8.0e-72 274.2 211 66.4
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 1.8e-71 273.1 219 65.8
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 2.0e-70 269.6 209 67.0
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 3.4e-70 268.9 219 64.4
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 4.4e-70 268.5 208 66.3
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 7.5e-70 267.7 211 63.5
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 1.3e-69 266.9 208 64.4
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 2.8e-69 265.8 219 61.6
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 4.8e-69 265.0 208 63.5
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 1.8e-68 263.1 218 61.9
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 3.1e-68 262.3 221 62.0
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 3.5e-67 258.8 219 59.8
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 5.9e-67 258.1 220 61.8
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 2.9e-66 255.8 219 58.4
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 6.6e-66 254.6 175 69.7
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 1.1e-65 253.8 220 61.4
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 1.1e-65 253.8 221 60.6
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.1e-65 253.8 220 58.6
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.5e-65 252.7 182 70.9
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.3e-65 252.3 220 61.4
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.2e-65 251.9 220 61.4
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 5.5e-65 251.5 220 60.0
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 7.2e-65 251.1 221 57.9
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 9.5e-65 250.8 220 60.9
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 1.6e-64 250.0 221 60.2
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 2.1e-64 249.6 220 60.5
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.8e-64 249.2 220 60.5
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.8e-64 249.2 220 60.5
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.8e-64 249.2 220 60.5
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.0e-63 247.3 220 60.0
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.0e-63 247.3 220 60.0
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.0e-63 247.3 220 60.0
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.4e-63 246.9 220 60.0
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.4e-63 246.9 220 59.5
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 1.4e-63 246.9 204 63.2
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 1.8e-63 246.5 215 59.1
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-63 246.1 220 60.0
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 3.0e-63 245.7 223 59.6
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 4.0e-63 245.4 223 58.7
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 4.0e-63 245.4 223 59.6
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 8.9e-63 244.2 223 59.6
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 2.0e-62 243.0 223 59.6
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 2.6e-62 242.7 221 58.4
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 3.4e-62 242.3 266 54.1
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 7.5e-62 241.1 193 61.7
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 9.8e-62 240.7 223 57.8
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.2e-61 239.6 161 75.2
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 2.2e-61 239.6 223 57.8
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 2.8e-61 239.2 223 58.3
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 3.7e-61 238.8 210 60.5
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 4.9e-61 238.4 219 59.4
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 4.9e-61 238.4 221 57.0
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 8.3e-61 237.7 223 59.2
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 1.8e-60 236.5 220 56.4
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 4.1e-60 235.3 211 58.3
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 5.4e-60 235.0 224 58.5
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 7.0e-60 234.6 256 54.3
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 9.2e-60 234.2 212 59.0
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 1.6e-59 233.4 222 56.3
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 1.6e-59 233.4 210 61.0
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 2.0e-59 233.0 225 58.7
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 2.7e-59 232.6 203 58.6
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 4.5e-59 231.9 249 53.4
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 5.9e-59 231.5 220 57.3
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 7.8e-59 231.1 222 55.9
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.7e-58 229.9 219 57.1
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 2.9e-58 229.2 214 57.9
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 5.0e-58 228.4 222 55.0
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 6.6e-58 228.0 219 56.6
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 4.3e-57 225.3 184 61.4
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 5.6e-57 224.9 227 55.9
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 7.3e-57 224.6 223 56.1
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 1.6e-56 223.4 227 55.5
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 6.1e-56 221.5 185 61.1
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 8.0e-56 221.1 219 53.9
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 1.4e-55 220.3 224 52.7
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.4e-55 220.3 187 61.0
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.4e-55 220.3 187 60.4
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 1.8e-55 219.9 221 52.9
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 2.3e-55 219.5 219 53.4
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 3.1e-55 219.2 224 52.7
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 3.1e-55 219.2 202 58.9
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.2e-54 217.2 222 52.7
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 2.0e-54 216.5 218 51.8
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 4.4e-54 215.3 219 52.5
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 9.8e-54 214.2 252 49.6
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 2.2e-53 213.0 218 51.4
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 3.7e-53 212.2 238 50.4
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 4.9e-53 211.8 218 50.9
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 8.3e-53 211.1 218 51.4
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 1.4e-52 210.3 218 50.9
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 1.4e-52 210.3 218 50.9
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.2e-52 209.1 198 58.1
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 4.1e-52 208.8 218 50.5
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 7.0e-52 208.0 218 50.0
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 7.0e-52 208.0 218 50.0
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 2.0e-51 206.5 218 50.0
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 3.5e-51 205.7 218 49.5
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 4.6e-51 205.3 178 60.7
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 1.3e-50 203.8 218 49.1
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 2.3e-50 203.0 185 60.5
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 6.6e-50 201.4 232 48.3
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 6.6e-50 201.4 234 48.7
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 1.1e-49 200.7 226 48.2
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 3.3e-49 199.1 133 73.7
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-47 193.0 159 64.2
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.2e-46 190.7 190 55.3
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 1.7e-42 176.8 346 35.5
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 5.6e-41 171.8 134 67.9
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.2e-40 170.6 152 62.5
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 2.8e-40 169.5 168 57.1
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 1.3e-37 160.6 193 52.3
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 1.7e-37 160.2 150 58.0
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.9e-37 159.5 148 58.8
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 1.2e-35 154.1 100 77.0
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 1.6e-35 153.7 157 56.1
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 5.1e-34 148.7 134 62.7
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 1.6e-32 143.7 136 61.8
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 5.8e-30 135.2 182 45.6
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 7.6e-30 134.8 116 59.5
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 2.2e-29 133.3 171 43.9
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 4.9e-29 132.1 137 55.5
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 1.4e-28 130.6 140 54.3
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 9.2e-28 127.9 169 42.0
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 2.5e-25 119.8 93 62.4
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 5.6e-25 118.6 180 37.8
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 7.3e-25 118.2 94 64.9
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 1.2e-22 110.9 143 45.5
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 7.6e-22 108.2 90 55.6
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 6.4e-21 105.1 140 45.7
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 2.4e-20 103.2 106 49.1
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 2.5e-17 93.2 165 40.0
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.2e-14 84.3 62 56.5
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 8.7e-10 68.2 66 53.0
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 1.6e-08 63.9 50 52.0
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 1.1e-07 61.2 147 29.3
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 3.1e-07 59.7 199 29.1
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 2.0e-06 57.0 161 29.2


User provided reference genes

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