Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 0.0e+00 1099.7 566 100.0
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.2e-215 753.4 570 74.2
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.2e-178 630.6 566 62.0
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 1.6e-178 630.2 545 62.8
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.9e-177 625.9 566 61.8
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 3.3e-176 622.5 563 62.2
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.2e-175 620.5 567 60.8
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 5.2e-174 615.1 559 61.2
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 5.2e-174 615.1 559 61.2
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.7e-172 610.1 545 62.0
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 5.4e-171 605.1 564 59.4
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 4.6e-170 602.1 567 58.9
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 4.6e-170 602.1 559 59.2
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 7.8e-170 601.3 563 59.1
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 1.7e-169 600.1 560 60.0
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 3.0e-169 599.4 554 60.6
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 2.5e-168 596.3 558 59.3
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 2.5e-168 596.3 564 58.5
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 4.3e-168 595.5 559 58.5
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 9.5e-168 594.3 559 58.1
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 3.6e-167 592.4 556 60.4
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.7e-167 592.0 566 57.2
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 4.7e-167 592.0 557 60.5
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.0e-167 591.3 577 56.8
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 2.3e-166 589.7 559 59.4
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 3.1e-166 589.3 565 58.1
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 4.0e-166 589.0 559 57.6
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.2e-165 587.4 558 59.1
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.6e-165 586.3 564 58.2
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 3.4e-165 585.9 560 59.1
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 4.4e-165 585.5 563 57.4
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.7e-164 583.6 564 56.7
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.9e-164 582.8 558 59.0
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.4e-163 580.5 585 57.1
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 1.9e-163 580.1 558 57.9
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.4e-163 579.7 579 55.4
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 9.2e-163 577.8 567 56.8
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 2.0e-162 576.6 558 57.7
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 4.6e-162 575.5 554 57.6
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 7.8e-162 574.7 568 56.7
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 1.0e-161 574.3 558 57.3
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 1.3e-161 573.9 562 57.5
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 3.0e-161 572.8 556 58.3
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 3.0e-161 572.8 558 57.0
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 5.0e-161 572.0 555 57.8
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 5.0e-161 572.0 554 58.5
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 8.6e-161 571.2 566 57.1
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 1.1e-160 570.9 564 57.1
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 2.5e-160 569.7 563 56.1
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 2.5e-160 569.7 538 58.6
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 9.5e-160 567.8 556 58.1
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 9.5e-160 567.8 560 55.7
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 9.5e-160 567.8 561 56.1
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 9.5e-160 567.8 558 56.1
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 1.2e-159 567.4 559 55.6
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 1.2e-159 567.4 559 55.6
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.2e-159 567.4 562 57.1
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 1.6e-159 567.0 544 57.2
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 2.8e-159 566.2 562 57.3
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 2.8e-159 566.2 575 55.7
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 6.2e-159 565.1 559 55.6
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 6.2e-159 565.1 559 55.6
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 8.1e-159 564.7 559 55.5
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 1.1e-158 564.3 559 55.3
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 1.1e-158 564.3 559 55.3
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 1.1e-158 564.3 561 56.5
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 1.1e-158 564.3 565 56.3
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 1.1e-158 564.3 564 56.7
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 1.4e-158 563.9 559 58.3
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 1.4e-158 563.9 559 58.0
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 2.3e-158 563.1 559 55.3
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 5.2e-158 562.0 555 58.2
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 6.8e-158 561.6 559 54.9
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 6.8e-158 561.6 555 58.2
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 1.2e-157 560.8 559 55.1
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 2.0e-157 560.1 559 55.1
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 2.0e-157 560.1 559 56.9
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 2.6e-157 559.7 561 57.4
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 3.4e-157 559.3 584 54.5
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 3.4e-157 559.3 558 57.0
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 7.5e-157 558.1 559 54.7
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 1.3e-156 557.4 561 54.5
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 5.4e-155 552.0 559 55.1
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 1.2e-154 550.8 559 56.2
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 2.3e-153 546.6 561 54.0
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 8.6e-153 544.7 562 53.9
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.5e-152 543.9 562 53.7
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 8.1e-151 538.1 628 51.4
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 3.4e-149 532.7 542 55.0
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 1.7e-148 530.4 563 54.7
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 3.5e-146 522.7 496 58.1
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 2.3e-145 520.0 547 53.7
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 4.7e-143 512.3 581 50.3
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 2.4e-142 510.0 511 56.9
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 2.9e-140 503.1 566 52.8
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 2.1e-138 496.9 512 55.7
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.8e-135 486.5 528 52.3
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 4.8e-135 485.7 562 50.7
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 3.4e-133 479.6 559 51.5
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.4e-133 479.2 587 49.4
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 9.3e-131 471.5 528 51.1
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 1.1e-128 464.5 567 50.1
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 5.3e-126 455.7 526 49.0
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 1.2e-122 444.5 471 53.1
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.5e-117 427.6 428 58.2
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 9.0e-110 401.7 440 53.4
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.2e-107 393.3 494 46.4
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 8.7e-105 385.2 380 58.9
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 2.0e-101 374.0 535 42.8
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 4.2e-99 366.3 551 41.4
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 3.4e-93 346.7 521 42.0
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 4.5e-93 346.3 449 47.0
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 3.6e-90 336.7 561 39.8
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 9.7e-88 328.6 333 57.1
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 9.7e-88 328.6 542 41.5
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 1.2e-85 321.6 320 58.8
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 1.0e-81 308.5 471 39.9
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.0e-81 307.0 277 61.4
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 7.7e-77 292.4 424 44.3
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.4e-70 271.6 195 69.2
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 1.9e-67 261.2 184 71.2
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 1.6e-66 258.1 174 71.8
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.1e-62 243.8 316 46.2
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.5e-59 234.2 184 64.7
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 3.3e-59 233.8 162 74.1
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 8.3e-55 219.2 315 40.6
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.3e-52 211.8 150 67.3
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 8.0e-50 202.6 115 86.1
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.2e-49 199.9 198 54.5
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.6e-45 188.3 291 42.6
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 2.7e-45 187.6 113 83.2
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.2e-42 178.7 434 32.0
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.1e-41 175.6 128 67.2
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.0e-40 171.4 175 54.3
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 8.6e-36 156.0 327 34.3
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 7.6e-32 142.9 106 67.9
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.9e-31 141.0 110 63.6
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 4.9e-23 113.6 105 55.2
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 4.2e-22 110.5 142 46.5
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 9.3e-22 109.4 83 63.9
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.7e-20 105.1 113 49.6
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 1.9e-19 101.7 88 60.2
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 9.6e-19 99.4 89 56.2
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.3e-18 99.0 86 57.0
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 1.5e-16 92.0 55 83.6
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 5.8e-16 90.1 71 63.4
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 2.2e-15 88.2 71 62.0
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 8.4e-15 86.3 76 61.8
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 4.2e-14 84.0 56 73.2
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 2.7e-13 81.3 142 36.6
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 3.5e-13 80.9 53 75.5
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 7.9e-13 79.7 82 52.4
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 2.6e-08 64.7 113 37.2
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 3.4e-08 64.3 212 31.6
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 4.5e-08 63.9 312 25.3
CDE02G0724 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.3e-07 62.4 54 59.3
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 4.9e-07 60.5 36 77.8
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 7.1e-06 56.6 36 80.6


User provided reference genes

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