Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1127G224 Amborella trichopoda HOM05D003499 ORTHO05D004754 0.0e+00 3288.8 2044 100.0
Nn7g38420 Nelumbo nucifera HOM05D003499 ORTHO05D004754 0.0e+00 1415.6 1868 51.8
GSVIVG01036698001 Vitis vinifera HOM05D003499 ORTHO05D004754 0.0e+00 1407.1 1881 51.4
Gorai.002G110900 Gossypium raimondii HOM05D003499 ORTHO05D004754 0.0e+00 1382.9 1905 47.8
CiPaw.15G111600 Carya illinoinensis HOM05D003499 ORTHO05D004754 0.0e+00 1381.3 1788 49.8
Gohir.A01G100800 Gossypium hirsutum HOM05D003499 ORTHO05D004754 0.0e+00 1379.8 1892 47.6
Gohir.D01G085300 Gossypium hirsutum HOM05D003499 ORTHO05D004754 0.0e+00 1375.5 1905 47.5
Duzib213G0086 Durio zibethinus HOM05D003499 ORTHO05D004754 0.0e+00 1371.3 1797 49.9
Potri.008G080900 Populus trichocarpa HOM05D003499 ORTHO05D004754 0.0e+00 1367.8 1900 48.3
Actinidia26203 Actinidia chinensis HOM05D003499 ORTHO05D004754 0.0e+00 1364.0 1870 47.7
QL04p095880 Quercus lobata HOM05D003499 ORTHO05D004754 0.0e+00 1338.9 1910 48.2
CANSAT56G3760 Cannabis sativa HOM05D003499 ORTHO05D004754 0.0e+00 1330.9 1866 48.8
Prupe.4G125000 Prunus persica HOM05D003499 ORTHO05D004754 0.0e+00 1322.4 1894 47.3
TWI38G0606 Tripterygium wilfordii HOM05D003499 ORTHO05D004754 0.0e+00 1321.6 1871 46.6
Thecc.07G189900 Theobroma cacao HOM05D003499 ORTHO05D004754 0.0e+00 1319.3 1869 46.8
RcHm_v2.0_Chr5g0023031 Rosa chinensis HOM05D003499 ORTHO05D004754 0.0e+00 1315.8 1902 46.3
CiPaw.16G079000 Carya illinoinensis HOM05D003499 ORTHO05D004754 0.0e+00 1315.1 1789 48.6
MD05G1240600 Malus domestica HOM05D003499 ORTHO05D004754 0.0e+00 1313.9 1877 47.4
Manes.16G052800 Manihot esculenta HOM05D003499 ORTHO05D004754 0.0e+00 1301.2 1887 47.0
Aqoxy1G01362 Aquilegia oxysepala HOM05D003499 ORTHO05D004754 0.0e+00 1297.3 1716 50.6
Lalb_Chr01g0015591 Lupinus albus HOM05D003499 ORTHO05D004754 0.0e+00 1295.4 1784 46.8
Dinv19570 Davidia involucrata HOM05D003499 ORTHO05D004754 0.0e+00 1294.3 1800 49.1
Dinv42452 Davidia involucrata HOM05D003499 ORTHO05D004754 0.0e+00 1290.8 1791 47.7
FAN21G2046 Fragaria x ananassa HOM05D003499 ORTHO05D004754 0.0e+00 1283.1 1920 45.4
Atru.chr1.17 Acer truncatum HOM05D003499 ORTHO05D004754 0.0e+00 1274.6 1892 45.3
Lalb_Chr25g0284181 Lupinus albus HOM05D003499 ORTHO05D004754 0.0e+00 1270.4 1891 44.9
FAN16G2389 Fragaria x ananassa HOM05D003499 ORTHO05D004754 0.0e+00 1269.2 1952 44.4
FvH4_3g13850 Fragaria vesca HOM05D003499 ORTHO05D004754 0.0e+00 1266.1 1908 45.0
CDE02G3941 Ceratophyllum demersum HOM05D003499 ORTHO05D004754 0.0e+00 1260.0 1863 45.5
Ciclev10006542m.g Citrus clementina HOM05D003499 ORTHO05D004754 0.0e+00 1252.7 1808 45.7
Lj3g0016310 Lotus japonicus HOM05D003499 ORTHO05D004754 0.0e+00 1251.1 1402 52.9
FAN25G2460 Fragaria x ananassa HOM05D003499 ORTHO05D004754 0.0e+00 1242.3 1923 44.2
Glyma.15G265300 Glycine max HOM05D003499 ORTHO05D004754 0.0e+00 1240.3 1887 44.0
Glyma.08G162300 Glycine max HOM05D003499 ORTHO05D004754 0.0e+00 1227.6 1876 43.8
PSO675G8338 Papaver somniferum HOM05D003499 ORTHO05D004754 0.0e+00 1225.7 1755 46.6
MSTRG.14572 Avicennia marina HOM05D003499 ORTHO05D004754 0.0e+00 1222.6 1886 44.8
Cfa017771 Carpinus fangiana HOM05D003499 ORTHO05D004754 0.0e+00 1221.5 1891 46.3
arahy.Tifrunner.gnm1.ann1.DHQL63 Arachis hypogaea HOM05D003499 ORTHO05D004754 0.0e+00 1218.0 1703 47.7
Cc00_g09120 Coffea canephora HOM05D003499 ORTHO05D004754 0.0e+00 1217.6 1884 44.2
TPR.G3598 Trifolium pratense HOM05D003499 ORTHO05D004754 0.0e+00 1214.9 1870 43.6
Medtr2g063480 Medicago truncatula HOM05D003499 ORTHO05D004754 0.0e+00 1211.4 1796 44.8
Psat0s13g0320 Pisum sativum HOM05D003499 ORTHO05D004754 0.0e+00 1210.7 1891 42.8
Aa31LG4G1710 Aethionema arabicum HOM05D003499 ORTHO05D004754 0.0e+00 1209.1 1934 45.1
Carub.0002s2615 Capsella rubella HOM05D003499 ORTHO05D004754 0.0e+00 1208.4 1907 43.7
TAR626G0290 Trochodendron aralioides HOM05D003499 ORTHO05D004754 0.0e+00 1207.6 1623 50.0
Phvul.005G045700 Phaseolus vulgaris HOM05D003499 ORTHO05D004754 0.0e+00 1200.7 1883 43.5
Thhalv10017995m.g Eutrema salsugineum HOM05D003499 ORTHO05D004754 0.0e+00 1197.6 1783 47.2
Sabra08G0060200 Salix brachista HOM05D003499 ORTHO05D004754 0.0e+00 1197.2 2100 41.7
AT1G79280 Arabidopsis thaliana HOM05D003499 ORTHO05D004754 0.0e+00 1195.3 1399 52.4
AL2G39880 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 0.0e+00 1189.5 1874 45.0
HanXRQChr14g0459251 Helianthus annuus HOM05D003499 ORTHO05D004754 0.0e+00 1188.3 1678 44.5
arahy.Tifrunner.gnm1.ann1.LW990M Arachis hypogaea HOM05D003499 ORTHO05D004754 0.0e+00 1178.7 1795 45.7
CsaV3_7G023140 Cucumis sativus L. HOM05D003499 ORTHO05D004754 0.0e+00 1177.9 1767 46.6
Oeu025990.2 Olea europaea HOM05D003499 ORTHO05D004754 0.0e+00 1175.6 1895 44.5
A07p44380 Brassica napus HOM05D003499 ORTHO05D004754 0.0e+00 1171.8 1796 47.2
CAN.G374.15 Capsicum annuum HOM05D003499 ORTHO05D004754 0.0e+00 1169.8 1908 41.7
EL10Ac8g19951 Beta vulgaris HOM05D003499 ORTHO05D004754 0.0e+00 1167.5 1885 45.0
Nitab4.5_0002333g0110 Nicotiana tabacum HOM05D003499 ORTHO05D004754 0.0e+00 1166.8 1920 42.0
CARHR072950 Cardamine hirsuta HOM05D003499 ORTHO05D004754 0.0e+00 1166.4 1897 44.3
THA.LOC104813306 Tarenaya hassleriana HOM05D003499 ORTHO05D004754 0.0e+00 1165.2 1906 46.3
A07p27200 Brassica napus HOM05D003499 ORTHO05D004754 0.0e+00 1164.8 1864 46.5
Sc05g0008250 Simmondsia chinensis HOM05D003499 ORTHO05D004754 0.0e+00 1159.8 1913 44.5
ECA233G1650 Erigeron canadensis HOM05D003499 ORTHO05D004754 0.0e+00 1159.1 1849 42.3
C06p53180 Brassica napus HOM05D003499 ORTHO05D004754 0.0e+00 1157.9 1796 46.6
VMungo1080G1290 Vigna mungo HOM05D003499 ORTHO05D004754 0.0e+00 1155.6 1886 42.7
Eucgr.F04480 Eucalyptus grandis HOM05D003499 ORTHO05D004754 0.0e+00 1155.2 1822 45.0
Sopen06g018680 Solanum pennellii HOM05D003499 ORTHO05D004754 0.0e+00 1147.5 1901 42.7
BolC6t40336H Brassica oleracea HOM05D003499 ORTHO05D004754 0.0e+00 1144.4 1824 45.9
BraA07t31947Z Brassica rapa HOM05D003499 ORTHO05D004754 0.0e+00 1140.2 1887 45.5
PGSC0003DMG400016328 Solanum tuberosum HOM05D003499 ORTHO05D004754 0.0e+00 1139.4 1880 42.4
PSO541G3284 Papaver somniferum HOM05D003499 ORTHO05D004754 0.0e+00 1130.9 1737 44.8
SGA_v2.0_scaffold239G43999 Striga asiatica HOM05D003499 ORTHO05D004754 0.0e+00 1119.0 1960 41.5
C06p29970 Brassica napus HOM05D003499 ORTHO05D004754 0.0e+00 1118.6 1873 46.7
BolC6t38157H Brassica oleracea HOM05D003499 ORTHO05D004754 0.0e+00 1118.6 1896 46.4
PGR031G3814 Punica granatum HOM05D003499 ORTHO05D004754 0.0e+00 1115.1 1899 43.4
Sp5g34360 Schrenkiella parvula HOM05D003499 ORTHO05D004754 0.0e+00 1108.2 1860 46.9
AUR62014655 Chenopodium quinoa HOM05D003499 ORTHO05D004754 0.0e+00 1105.1 1840 45.2
BraA07t30364Z Brassica rapa HOM05D003499 ORTHO05D004754 0.0e+00 1102.0 1827 46.7
Ah.09g236940 Amaranthus hybridus HOM05D003499 ORTHO05D004754 0.0e+00 1097.8 1821 45.7
Hund21305 Selenicereus undatus HOM05D003499 ORTHO05D004754 0.0e+00 1097.4 1863 45.4
FAN11G2210 Fragaria x ananassa HOM05D003499 ORTHO05D004754 0.0e+00 1095.9 2193 38.8
Lsat_1_v5_gn_8_41780 Lactuca sativa HOM05D003499 ORTHO05D004754 0.0e+00 1090.9 1814 41.3
Migut.H01651 Erythranthe guttata HOM05D003499 ORTHO05D004754 0.0e+00 1089.7 1892 42.5
AUR62012541 Chenopodium quinoa HOM05D003499 ORTHO05D004754 0.0e+00 1086.6 1938 43.7
BcaB02g07209 Brassica carinata HOM05D003499 ORTHO05D004754 9.9e-308 1061.2 1799 46.7
ClCG09G022890 Citrullus lanatus HOM05D003499 ORTHO05D004754 1.1e-306 1057.7 1902 42.2
BcaC08g45365 Brassica carinata HOM05D003499 ORTHO05D004754 1.9e-306 1057.0 1872 45.6
Sed0001737 Sechium edule HOM05D003499 ORTHO05D004754 2.7e-305 1053.1 1800 41.4
Peaxi162Scf00579g00316 Petunia axillaris HOM05D003499 ORTHO05D004754 2.1e-302 1043.5 1885 40.7
DCAR_013704 Daucus carota HOM05D003499 ORTHO05D004754 2.8e-302 1043.1 1875 42.0
Nitab4.5_0005627g0040 Nicotiana tabacum HOM05D003499 ORTHO05D004754 5.8e-300 1035.4 1916 39.9
Rhsim09G0000500 Rhododendron simsii HOM05D003499 ORTHO05D004754 8.4e-299 1031.6 2081 39.0
Pp3c8_8020 Physcomitrium patens HOM05D003499 ORTHO05D004754 1.2e-297 1027.7 1406 45.0
MELO3C012583.2 Cucumis melo HOM05D003499 ORTHO05D004754 1.8e-280 970.7 1517 44.0
Zm00001eb194730 Zea mays HOM05D003499 ORTHO05D004754 3.3e-279 966.5 1853 40.4
Os02g0741500 Oryza sativa ssp. japonica HOM05D003499 ORTHO05D004754 7.6e-276 955.3 1842 40.5
Mapoly0042s0082 Marchantia polymorpha HOM05D003499 ORTHO05D004754 9.4e-274 948.3 1685 41.0
AagrBONN_evm.TU.Sc2ySwM_344.3653 Anthoceros agrestis HOM05D003499 ORTHO05D004754 1.7e-270 937.6 1695 40.4
MBI02_g17882_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 3.0e-264 916.8 928 58.0
HanXRQChr08g0213121 Helianthus annuus HOM05D003499 ORTHO05D004754 9.7e-263 911.8 1649 38.3
HPP92_017349 Vanilla planifolia HOM05D003499 ORTHO05D004754 4.8e-262 909.4 1256 46.1
unitig_578.g16338 Utricularia gibba HOM05D003499 ORTHO05D004754 9.7e-255 885.2 1887 37.0
Hma1.2p1_0151F.1_g066930 Hydrangea macrophylla HOM05D003499 ORTHO05D004754 1.2e-247 861.7 940 53.8
SMO203G0250 Selaginella moellendorffii HOM05D003499 ORTHO05D004754 7.5e-231 805.8 1940 35.1
AL2G39750 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 7.5e-215 752.7 929 47.9
SEGI_36052 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 6.4e-214 749.6 828 53.4
HPP92_017337 Vanilla planifolia HOM05D003499 ORTHO05D004754 1.2e-199 702.2 1025 44.4
Haze_18466 Corylus avellana HOM05D003499 ORTHO05D004754 2.2e-190 671.4 1858 33.8
SEGI_41216 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 1.5e-186 658.7 780 51.3
Solyc06g053570.2 Solanum lycopersicum HOM05D003499 ORTHO05D004754 5.6e-178 630.2 788 47.5
Oeu025989.1 Olea europaea HOM05D003499 ORTHO05D004754 1.2e-172 612.5 1191 40.7
MD10G1218800 Malus domestica HOM05D003499 ORTHO05D004754 7.6e-167 593.2 758 49.2
Sabra16G0005400 Salix brachista HOM05D000228 ORTHO05D001122 2.5e-162 578.2 850 46.7
COL.COLO4_25003 Corchorus olitorius HOM05D003499 ORTHO05D004754 8.8e-155 553.1 1397 33.6
Ca_03376_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 5.1e-147 527.3 1016 39.3
MD10G1218600 Malus domestica HOM05D003499 ORTHO05D004754 2.6e-146 525.0 525 55.6
Ca_03377_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 3.1e-144 518.1 728 45.5
vmacro21306 Vaccinium macrocarpon HOM05D003499 ORTHO05D004754 9.1e-144 516.5 788 44.5
CBR_g33916 Chara braunii HOM05D003499 ORTHO05D004754 2.6e-130 471.9 871 37.8
Sabra11G0075400 Salix brachista HOM05D000228 ORTHO05D001122 6.2e-100 370.9 738 38.6
SEGI_27786 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 1.1e-93 350.1 985 33.6
Sabra16G0132400 Salix brachista HOM05D000228 ORTHO05D001122 1.7e-86 326.2 740 36.5
HPP92_017338 Vanilla planifolia HOM05D003499 ORTHO05D004754 1.3e-81 310.1 327 53.5
Lj2C7G1 Lonicera japonica HOM05D003499 ORTHO05D004754 7.3e-77 294.3 289 54.7
Mapoly2166s0001 Marchantia polymorpha HOM05D003499 ORTHO05D004754 2.7e-71 275.8 505 37.6
Sabra19G0031300 Salix brachista HOM05D000228 ORTHO05D001122 3.9e-70 271.9 316 53.5
MBI02_g17883_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 6.2e-68 264.6 600 43.8
vmacro21307 Vaccinium macrocarpon HOM05D003499 ORTHO05D004754 1.7e-65 256.5 413 41.9
AUR62044736 Chenopodium quinoa HOM05D003499 ORTHO05D004754 2.3e-62 246.1 406 47.5
CBR_g33917 Chara braunii HOM05D003499 ORTHO05D004754 2.5e-61 242.7 376 40.7
PRCOL_00003349 Prasinoderma coloniale HOM05D003499 ORTHO05D004754 1.0e-57 230.7 1444 24.0
MCO03G110 Micromonas commoda HOM05D003499 ORTHO05D004754 5.5e-56 224.9 1378 23.3
Sabra19G0031200 Salix brachista HOM05D000228 ORTHO05D001122 7.9e-55 221.1 488 36.3
Haze_18467 Corylus avellana HOM05D003499 ORTHO05D004754 1.1e-53 217.2 188 66.0
SHI33381 Sapria himalayana HOM05D003499 ORTHO05D004754 2.9e-41 176.0 174 55.2
Haze_18469 Corylus avellana HOM05D003499 ORTHO05D004754 1.2e-39 170.6 280 38.6
HanXRQChr11g0329221 Helianthus annuus HOM05D003499 ORTHO05D004754 3.6e-39 169.1 172 55.8
Cpa.g.sc569.2 Carica papaya HOM05D003499 ORTHO05D004754 1.3e-36 160.6 408 40.9
AL2G39760 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 1.8e-30 140.2 198 47.0
MBI12_g17629_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 6.7e-30 138.3 124 62.1
MBI07_g23017_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 4.1e-27 129.0 158 50.6
Cpa.g.sc31.23 Carica papaya HOM05D003499 ORTHO05D004754 2.0e-26 126.7 99 61.6
MBI18_g13000_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 2.2e-25 123.2 175 44.6
MELO3C012602.2 Cucumis melo HOM05D003499 ORTHO05D004754 1.1e-24 120.9 101 60.4
MBI18_g27146_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 5.5e-24 118.6 191 42.9
MELO3C000424.2 Cucumis melo HOM05D003499 ORTHO05D004754 1.1e-21 110.9 182 51.6
Lj2A6T29 Lonicera japonica HOM05D003499 ORTHO05D004754 7.5e-21 108.2 464 27.2
SalBow6G0003 Salvia bowleyana HOM05D003499 ORTHO05D004754 1.4e-19 104.0 185 38.4
SalBow6G2443 Salvia bowleyana HOM05D003499 ORTHO05D004754 1.4e-19 104.0 185 38.4
SalBow6G6137 Salvia bowleyana HOM05D003136 ORTHO05D003562 1.4e-19 104.0 185 38.4
SHI33383 Sapria himalayana HOM05D000105 ORTHO05D000023 2.4e-19 103.2 148 43.9
MBI18_g33844_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 3.5e-18 99.4 151 39.7
MBI16_g34347_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 1.3e-17 97.4 98 59.2
CDE05G0263 Ceratophyllum demersum HOM05D003499 ORTHO05D004754 7.2e-16 91.7 110 44.5
MBI17_g19041_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 8.0e-15 88.2 97 52.6
MBI03_g24553_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 2.3e-14 86.7 95 52.6
Solyc06g053590.4 Solanum lycopersicum HOM05D003499 ORTHO05D004754 5.2e-14 85.5 578 28.5
Medtr2g450170 Medicago truncatula HOM05D003499 ORTHO05D004754 2.0e-13 83.6 123 49.6
MBI14_g41599_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 9.8e-13 81.3 95 49.5
Sc21g0005210 Simmondsia chinensis HOM05D003499 ORTHO05D004754 1.7e-12 80.5 104 45.2
MBI10_g08630_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 2.8e-12 79.7 127 42.5
Sabra16G0132500 Salix brachista HOM05D000228 ORTHO05D001122 4.8e-12 79.0 89 49.4
Cpa.g.c34987 Carica papaya HOM05D003499 ORTHO05D004754 1.2e-10 74.3 57 66.7
Rhsim03G0230300 Rhododendron simsii HOM05D000285 ORTHO05D004754 2.2e-09 70.1 182 32.4
MBI02_g18804_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 5.0e-09 68.9 100 46.0
MBI10_g16742_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 2.1e-07 63.5 110 40.0
COL.COLO4_35707 Corchorus olitorius HOM05D003499 ORTHO05D004754 1.4e-06 60.8 136 38.2
Rhsim02G0129800 Rhododendron simsii HOM05D003499 ORTHO05D004754 1.4e-06 60.8 263 26.6
HPP92_017348 Vanilla planifolia HOM05D003499 ORTHO05D004754 4.0e-06 59.3 356 26.4
MBI02_g41948_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 5.2e-06 58.9 51 60.8
AL8G20460 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 6.8e-06 58.5 108 37.0
Sc15g0004610 Simmondsia chinensis HOM05D000219 ORTHO05D000226 6.8e-06 58.5 85 40.0


User provided reference genes

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