Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 4.1e-298 1027.3 530 100.0
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 2.2e-195 686.0 520 68.7
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 1.5e-194 683.3 515 69.5
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 3.2e-194 682.2 516 68.6
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 1.2e-193 680.2 515 69.9
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 2.1e-193 679.5 516 69.4
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 2.7e-193 679.1 522 69.5
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 1.0e-192 677.2 522 68.6
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 8.8e-192 674.1 517 70.0
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 2.6e-191 672.5 536 64.9
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 4.4e-191 671.8 520 66.3
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.3e-190 670.2 517 69.6
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 2.2e-190 669.5 520 67.9
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 2.8e-190 669.1 490 71.2
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 2.8e-190 669.1 520 67.9
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 3.7e-190 668.7 490 70.4
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 6.3e-190 667.9 516 67.2
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 6.3e-190 667.9 520 67.9
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 1.1e-189 667.2 485 70.5
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 1.4e-189 666.8 531 66.7
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 3.1e-189 665.6 526 67.5
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 4.1e-189 665.2 487 71.9
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 7.0e-189 664.5 523 69.2
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 1.2e-188 663.7 511 69.1
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 2.0e-188 662.9 523 65.8
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 5.9e-188 661.4 491 69.7
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 7.7e-188 661.0 510 67.3
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 7.7e-188 661.0 514 69.3
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 3.8e-187 658.7 515 68.2
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 8.5e-187 657.5 482 70.5
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 1.5e-186 656.8 511 67.9
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 3.2e-186 655.6 518 67.4
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 1.6e-185 653.3 516 66.7
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 3.6e-185 652.1 456 74.6
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 4.0e-184 648.7 516 66.3
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 4.0e-184 648.7 517 66.7
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 5.2e-184 648.3 489 69.3
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 8.8e-184 647.5 524 64.9
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 2.0e-183 646.4 536 64.0
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 2.0e-183 646.4 523 66.5
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 7.5e-183 644.4 536 63.8
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 9.8e-183 644.0 569 62.4
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.3e-182 643.7 536 63.8
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 1.7e-182 643.3 523 64.6
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 3.7e-182 642.1 536 63.8
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 7.0e-181 637.9 536 63.8
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 4.5e-180 635.2 482 67.2
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 1.0e-179 634.0 521 65.1
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 1.1e-178 630.6 468 69.9
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 2.8e-177 625.9 479 69.1
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 2.3e-176 622.9 487 66.5
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 4.0e-176 622.1 511 65.4
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 6.8e-176 621.3 523 64.2
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 6.8e-176 621.3 488 66.2
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 1.2e-175 620.5 515 64.5
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 1.5e-175 620.2 501 64.7
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 7.5e-175 617.8 478 67.8
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 2.2e-174 616.3 495 65.5
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 2.9e-174 615.9 501 65.1
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 6.4e-174 614.8 478 67.4
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 1.8e-173 613.2 489 65.6
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 2.0e-172 609.8 478 66.3
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 4.6e-172 608.6 517 63.4
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 2.3e-171 606.3 518 63.5
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 3.0e-171 605.9 514 62.8
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 2.5e-170 602.8 506 63.2
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 4.3e-170 602.1 518 63.1
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 5.6e-170 601.7 506 63.0
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 9.5e-170 600.9 517 62.5
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 1.6e-169 600.1 504 63.3
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 1.6e-169 600.1 504 63.3
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 4.7e-169 598.6 507 63.3
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 1.0e-168 597.4 506 63.0
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 1.8e-168 596.7 515 62.5
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 3.1e-168 595.9 496 63.7
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 1.2e-167 594.0 490 64.7
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 1.5e-167 593.6 521 61.6
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 4.4e-167 592.0 525 62.7
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 1.7e-166 590.1 518 60.4
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 3.2e-165 585.9 530 59.2
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 5.4e-165 585.1 520 61.0
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 1.2e-164 583.9 516 61.6
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 3.5e-164 582.4 520 60.8
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 7.8e-164 581.3 544 59.4
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 7.8e-164 581.3 524 60.3
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 8.6e-163 577.8 528 59.7
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 8.9e-160 567.8 395 71.6
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 1.4e-157 560.5 465 65.2
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 1.9e-154 550.1 499 59.7
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 1.6e-153 547.0 483 59.6
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 3.6e-153 545.8 491 60.7
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 8.9e-152 541.2 506 59.5
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 4.4e-151 538.9 436 63.8
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 2.9e-150 536.2 447 64.7
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 5.8e-143 511.9 436 59.6
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.2e-111 407.9 361 61.2
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 6.3e-97 359.0 277 66.4
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 2.4e-96 357.1 280 64.6
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 1.1e-85 321.6 470 43.0
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 1.2e-84 318.2 279 62.7
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 5.7e-82 309.3 278 60.4
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 6.5e-78 295.8 430 40.9
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 6.1e-76 289.3 167 79.6
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 1.7e-73 281.2 240 62.5
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 2.0e-66 257.7 203 65.0
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 1.4e-64 251.5 499 35.9
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 7.0e-64 249.2 392 38.0
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 9.5e-53 212.2 265 47.5
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 2.1e-52 211.1 151 72.2
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 6.2e-52 209.5 125 73.6
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 8.9e-51 205.7 125 76.0
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.4e-48 198.4 167 67.7
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 3.3e-45 187.2 254 41.3
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 7.3e-45 186.0 185 53.5
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 8.7e-30 136.0 111 72.1
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 1.5e-29 135.2 80 73.8
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 9.6e-29 132.5 233 39.9
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 9.9e-26 122.5 92 67.4
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 1.3e-22 112.1 84 71.4
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 9.9e-18 95.9 72 55.6
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 4.2e-16 90.5 116 52.6
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 5.4e-16 90.1 53 73.6
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 9.3e-16 89.4 103 55.3
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 2.3e-14 84.7 151 41.7
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 3.0e-14 84.3 81 65.4
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 2.8e-12 77.8 94 42.6
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 5.3e-11 73.6 65 69.2
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 2.9e-09 67.8 45 60.0
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 1.4e-08 65.5 138 37.7
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 4.6e-07 60.5 32 84.4


User provided reference genes

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