Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1089G005 Amborella trichopoda HOM05D003404 ORTHO05D004052 9.7e-201 703.4 380 100.0
MBI06_g16624_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 1.9e-164 582.8 376 83.0
PSO210G7577 Papaver somniferum HOM05D003404 ORTHO05D004052 1.4e-159 566.6 376 81.9
MELO3C016463.2 Cucumis melo HOM05D003404 ORTHO05D004052 3.9e-157 558.5 376 78.7
CsaV3_3G006660 Cucumis sativus L. HOM05D003404 ORTHO05D004052 3.9e-157 558.5 376 77.9
PSO761G0035 Papaver somniferum HOM05D003404 ORTHO05D004052 3.9e-157 558.5 376 80.6
Nn5g27178 Nelumbo nucifera HOM05D003404 ORTHO05D004052 6.6e-157 557.8 376 79.5
TAR376G0925 Trochodendron aralioides HOM05D003404 ORTHO05D004052 4.3e-156 555.1 376 79.3
Sed0011322 Sechium edule HOM05D003404 ORTHO05D004052 9.5e-156 553.9 376 78.5
ECA236G3319 Erigeron canadensis HOM05D003404 ORTHO05D004052 2.8e-155 552.4 376 78.2
Lj5C285G4 Lonicera japonica HOM05D003404 ORTHO05D004052 2.8e-155 552.4 376 78.5
Manes.07G030800 Manihot esculenta HOM05D003404 ORTHO05D004052 3.6e-155 552.0 376 79.5
Aqoxy5G01845 Aquilegia oxysepala HOM05D003404 ORTHO05D004052 2.4e-154 549.3 376 78.2
Gohir.A06G144600 Gossypium hirsutum HOM05D003404 ORTHO05D004052 3.1e-154 548.9 376 77.9
Gorai.010G175500 Gossypium raimondii HOM05D003404 ORTHO05D004052 3.1e-154 548.9 376 77.9
Nitab4.5_0007689g0020 Nicotiana tabacum HOM05D003404 ORTHO05D004052 3.1e-154 548.9 376 77.7
Gohir.D06G150300 Gossypium hirsutum HOM05D003404 ORTHO05D004052 4.0e-154 548.5 376 77.9
Glyma.17G002000 Glycine max HOM05D003404 ORTHO05D004052 5.2e-154 548.1 376 78.7
TWI14G1077 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 6.8e-154 547.7 376 77.1
Nitab4.5_0003247g0080 Nicotiana tabacum HOM05D003404 ORTHO05D004052 1.5e-153 546.6 376 77.4
Potri.004G229300 Populus trichocarpa HOM05D003404 ORTHO05D004052 5.8e-153 544.7 376 77.7
CSS0015679 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D004052 7.6e-153 544.3 376 77.7
Lsat_1_v5_gn_9_83361 Lactuca sativa HOM05D003404 ORTHO05D004052 6.4e-152 541.2 364 78.3
Potri.003G000500 Populus trichocarpa HOM05D003404 ORTHO05D004052 6.4e-152 541.2 376 77.4
Sopen01g045420 Solanum pennellii HOM05D003404 ORTHO05D004052 6.4e-152 541.2 376 75.5
HanXRQChr15g0469691 Helianthus annuus HOM05D003404 ORTHO05D004052 8.4e-152 540.8 376 76.9
VMungo1215G2990 Vigna mungo HOM05D003404 ORTHO05D004052 8.4e-152 540.8 376 77.9
Duzib235G1119 Durio zibethinus HOM05D003404 ORTHO05D004052 1.4e-151 540.0 376 77.7
Duzib192G0569 Durio zibethinus HOM05D003404 ORTHO05D004052 1.9e-151 539.7 376 78.5
Phvul.003G076300 Phaseolus vulgaris HOM05D003404 ORTHO05D004052 1.9e-151 539.7 376 77.7
CiPaw.05G001400 Carya illinoinensis HOM05D003404 ORTHO05D004052 2.4e-151 539.3 375 76.5
HanXRQChr04g0110261 Helianthus annuus HOM05D003404 ORTHO05D004052 3.2e-151 538.9 376 75.5
arahy.Tifrunner.gnm1.ann1.TT7XH0 Arachis hypogaea HOM05D003404 ORTHO05D004052 4.1e-151 538.5 376 77.9
GSVIVG01023143001 Vitis vinifera HOM05D003404 ORTHO05D004052 4.1e-151 538.5 403 74.4
Cfa004441 Carpinus fangiana HOM05D003404 ORTHO05D004052 5.4e-151 538.1 375 77.9
MD07G1304100 Malus domestica HOM05D003404 ORTHO05D004052 5.4e-151 538.1 376 76.6
Solyc01g103010.4 Solanum lycopersicum HOM05D003404 ORTHO05D004052 5.4e-151 538.1 376 75.5
HPP92_001482 Vanilla planifolia HOM05D003404 ORTHO05D004052 5.4e-151 538.1 366 77.6
Haze_09982 Corylus avellana HOM05D003404 ORTHO05D004052 7.1e-151 537.7 375 77.6
RcHm_v2.0_Chr1g0383371 Rosa chinensis HOM05D003404 ORTHO05D004052 7.1e-151 537.7 376 77.1
Thecc.06G019500 Theobroma cacao HOM05D003404 ORTHO05D004052 7.1e-151 537.7 376 77.9
arahy.Tifrunner.gnm1.ann1.F0HWYS Arachis hypogaea HOM05D003404 ORTHO05D004052 9.2e-151 537.3 376 77.9
Ciclev10000063m.g Citrus clementina HOM05D003404 ORTHO05D004052 1.2e-150 537.0 376 76.3
Glyma.07G272400 Glycine max HOM05D003404 ORTHO05D004052 2.1e-150 536.2 376 77.4
CANSAT21G0984 Cannabis sativa HOM05D003404 ORTHO05D004052 6.0e-150 534.6 376 76.9
FvH4_7g33400 Fragaria vesca HOM05D003404 ORTHO05D004052 6.0e-150 534.6 376 76.6
MD01G1232300 Malus domestica HOM05D003404 ORTHO05D004052 6.0e-150 534.6 376 75.8
vmacro19829 Vaccinium macrocarpon HOM05D003404 ORTHO05D004052 7.8e-150 534.3 376 75.3
Prupe.2G322700 Prunus persica HOM05D003404 ORTHO05D004052 1.0e-149 533.9 376 77.1
TWI59G0557 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 1.0e-149 533.9 376 76.3
Atru.chr6.225 Acer truncatum HOM05D003404 ORTHO05D004052 1.7e-149 533.1 376 75.5
Lalb_Chr18g0061171 Lupinus albus HOM05D003404 ORTHO05D004052 1.7e-149 533.1 376 76.3
CDE05G1207 Ceratophyllum demersum HOM05D003404 ORTHO05D004052 3.0e-149 532.3 376 77.4
Medtr4g134620 Medicago truncatula HOM05D003404 ORTHO05D004052 3.9e-149 531.9 376 75.3
Lalb_Chr15g0090861 Lupinus albus HOM05D003404 ORTHO05D004052 6.6e-149 531.2 376 75.8
TPR.G6014 Trifolium pratense HOM05D003404 ORTHO05D004052 2.8e-147 525.8 376 75.0
Lj4g0008829 Lotus japonicus HOM05D003404 ORTHO05D004052 4.7e-147 525.0 376 75.5
DCAR_001727 Daucus carota HOM05D003404 ORTHO05D004052 8.1e-147 524.2 376 75.8
PGR042G3714 Punica granatum HOM05D003404 ORTHO05D004052 1.8e-146 523.1 376 76.1
Rhsim05G0115300 Rhododendron simsii HOM05D003404 ORTHO05D004052 1.8e-146 523.1 406 70.2
CAN.G855.55 Capsicum annuum HOM05D003404 ORTHO05D004052 4.0e-146 521.9 374 75.4
Psat4g002640 Pisum sativum HOM05D003404 ORTHO05D004052 1.2e-145 520.4 376 74.5
Actinidia26195 Actinidia chinensis HOM05D003404 ORTHO05D004052 1.5e-145 520.0 376 74.7
QL02p103380 Quercus lobata HOM05D003404 ORTHO05D004052 2.0e-145 519.6 364 77.5
Oeu028473.1 Olea europaea HOM05D003404 ORTHO05D004052 4.4e-145 518.5 363 73.0
unitig_27.g24934 Utricularia gibba HOM05D003404 ORTHO05D004052 6.4e-144 514.6 381 73.5
Peaxi162Scf00011g01927 Petunia axillaris HOM05D003404 ORTHO05D004052 1.4e-143 513.5 376 74.2
Aa31LG2G7580 Aethionema arabicum HOM05D003404 ORTHO05D004052 1.9e-143 513.1 376 73.4
Migut.B00720 Erythranthe guttata HOM05D003404 ORTHO05D004052 3.2e-143 512.3 376 73.4
SGA_v2.0_scaffold254G45235 Striga asiatica HOM05D003404 ORTHO05D004052 3.2e-143 512.3 376 73.1
MSTRG.16466 Avicennia marina HOM05D003404 ORTHO05D004052 1.2e-142 510.4 376 72.9
ClCG10G007400 Citrullus lanatus HOM05D003404 ORTHO05D004052 1.6e-142 510.0 362 76.0
Os02g0167700 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 1.6e-142 510.0 376 74.2
Sc12g0008780 Simmondsia chinensis HOM05D003404 ORTHO05D004052 3.5e-142 508.8 376 71.0
BcaC06g31227 Brassica carinata HOM05D003404 ORTHO05D004052 1.3e-141 506.9 376 71.8
BolC7t43839H Brassica oleracea HOM05D003404 ORTHO05D004052 1.3e-141 506.9 376 71.8
Cc02_g23620 Coffea canephora HOM05D003404 ORTHO05D004052 1.3e-141 506.9 402 70.1
AT2G02560 Arabidopsis thaliana HOM05D003404 ORTHO05D004052 1.7e-141 506.5 376 72.6
AL5G11830 Arabidopsis lyrata HOM05D003404 ORTHO05D004052 2.3e-141 506.1 376 72.1
Thhalv10003535m.g Eutrema salsugineum HOM05D003404 ORTHO05D004052 3.0e-141 505.8 376 72.6
MBI06_g14248_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 3.9e-141 505.4 376 74.2
CARHR145090 Cardamine hirsuta HOM05D003404 ORTHO05D004052 2.5e-140 502.7 376 72.1
Carub.0005s0156 Capsella rubella HOM05D003404 ORTHO05D004052 3.3e-140 502.3 376 71.3
THA.LOC104805135 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 3.3e-140 502.3 376 72.3
EL10Ac6g13982 Beta vulgaris HOM05D003404 ORTHO05D004052 7.3e-140 501.1 376 72.3
Sabra01G0174500 Salix brachista HOM05D003404 ORTHO05D004052 6.2e-139 498.0 376 69.4
Sp2g13790 Schrenkiella parvula HOM05D003404 ORTHO05D004052 1.8e-138 496.5 376 71.3
Ah.03g136760 Amaranthus hybridus HOM05D003404 ORTHO05D004052 2.4e-138 496.1 376 72.6
C02p50810 Brassica napus HOM05D003404 ORTHO05D004052 2.4e-138 496.1 376 70.5
BcaC03g17156 Brassica carinata HOM05D003404 ORTHO05D004052 5.3e-138 495.0 376 70.5
BolC2t11162H Brassica oleracea HOM05D003404 ORTHO05D004052 5.3e-138 495.0 376 70.2
BraA06t27242Z Brassica rapa HOM05D003404 ORTHO05D004052 9.0e-138 494.2 376 71.3
BraA02t08325Z Brassica rapa HOM05D003404 ORTHO05D004052 1.5e-137 493.4 376 69.9
C07p33270 Brassica napus HOM05D003404 ORTHO05D004052 2.6e-137 492.7 365 72.1
Ca_13528_v3 Cicer arietinum L. HOM05D003404 ORTHO05D004052 7.6e-137 491.1 458 59.2
THA.LOC104801780 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 1.3e-136 490.3 376 70.7
BcaB07g30328 Brassica carinata HOM05D003404 ORTHO05D004052 4.9e-136 488.4 376 69.7
A02p33040 Brassica napus HOM05D003404 ORTHO05D004052 3.5e-134 482.3 402 65.9
A06p43570 Brassica napus HOM05D003404 ORTHO05D004052 6.7e-133 478.0 365 71.2
Mapoly0029s0003 Marchantia polymorpha HOM05D003404 ORTHO05D004052 9.0e-130 467.6 372 68.3
Zm00001eb207390 Zea mays HOM05D003404 ORTHO05D004052 1.2e-129 467.2 376 70.2
COL.COLO4_31122 Corchorus olitorius HOM05D003404 ORTHO05D004052 1.5e-129 466.8 352 70.7
SMO364G0878 Selaginella moellendorffii HOM05D003404 ORTHO05D004052 1.5e-129 466.8 373 67.6
Pp3c8_3260 Physcomitrium patens HOM05D003404 ORTHO05D004052 1.3e-128 463.8 372 67.5
Eucgr.G00074 Eucalyptus grandis HOM05D003404 ORTHO05D004052 6.0e-126 454.9 326 76.7
Dinv29635 Davidia involucrata HOM05D003404 ORTHO05D004052 1.0e-125 454.1 313 78.6
Pp3c4_6460 Physcomitrium patens HOM05D003404 ORTHO05D004052 1.0e-125 454.1 372 66.9
Sabra03G0000100 Salix brachista HOM05D003404 ORTHO05D004052 4.3e-116 422.2 455 54.5
Os02g0169800 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 2.9e-112 409.5 290 72.8
Dinv29680 Davidia involucrata HOM05D003404 ORTHO05D004052 8.5e-112 407.9 292 76.7
AagrBONN_evm.TU.Sc2ySwM_228.3869 Anthoceros agrestis HOM05D003404 ORTHO05D004052 2.9e-104 382.9 373 58.4
BcaC06g31226 Brassica carinata HOM05D003404 ORTHO05D004052 6.5e-104 381.7 276 70.7
FAN01G2685 Fragaria x ananassa HOM05D003404 ORTHO05D004052 7.2e-95 351.7 376 56.9
AUR62042960 Chenopodium quinoa HOM05D003404 ORTHO05D004052 1.5e-92 344.0 376 53.5
AUR62043067 Chenopodium quinoa HOM05D003404 ORTHO05D004052 1.7e-91 340.5 376 52.9
CBR_g18772 Chara braunii HOM05D003404 ORTHO05D004052 3.1e-90 336.3 300 62.0
FAN03G0122 Fragaria x ananassa HOM05D003404 ORTHO05D004052 3.2e-87 326.2 362 56.1
FAN10G3720 Fragaria x ananassa HOM05D003404 ORTHO05D004052 9.1e-74 281.6 198 71.7
FAN10G0829 Fragaria x ananassa HOM05D003404 ORTHO05D004052 2.7e-73 280.0 198 71.2
SHI05020 Sapria himalayana HOM05D003404 ORTHO05D004052 4.2e-71 272.7 369 46.3
BcaC06g34049 Brassica carinata HOM05D003404 ORTHO05D004052 2.6e-68 263.5 195 68.2
Cre03.g177053 Chlamydomonas reinhardtii HOM05D003404 ORTHO05D004052 3.1e-61 240.0 407 40.0
SEGI_37814 Sequoiadendron giganteum HOM05D003404 ORTHO05D004052 5.2e-61 239.2 191 65.4
Haze_26135 Corylus avellana HOM05D003404 ORTHO05D004052 6.6e-56 222.2 384 33.9
PRCOL_00003487 Prasinoderma coloniale HOM05D003404 ORTHO05D004052 1.4e-45 188.0 349 37.5
MCO07G702 Micromonas commoda HOM05D003404 ORTHO05D004052 2.4e-42 177.2 389 36.5
Lsat_1_v5_gn_8_101580 Lactuca sativa HOM05D001355 ORTHO05D004052 3.2e-42 176.8 172 61.6
Hund15376 Selenicereus undatus HOM05D003404 ORTHO05D004052 8.1e-38 162.2 139 63.3
Hund15388 Selenicereus undatus HOM05D003404 ORTHO05D004052 1.1e-37 161.8 345 40.0
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 1.8e-29 134.4 152 53.3
Actinidia01639 Actinidia chinensis HOM05D003404 ORTHO05D004052 6.4e-27 125.9 76 82.9
Cfa023835 Carpinus fangiana HOM05D003404 ORTHO05D004052 4.2e-26 123.2 417 30.2
RcHm_v2.0_Chr3g0481561 Rosa chinensis HOM05D003404 ORTHO05D029456 1.9e-23 114.4 91 67.0
Lsat_1_v5_gn_6_52600 Lactuca sativa HOM05D003404 ORTHO05D016190 5.6e-23 112.8 82 69.5
TPR.G7178 Trifolium pratense HOM05D003404 ORTHO05D004052 5.3e-21 106.3 82 64.6
PGSC0003DMG400025772 Solanum tuberosum HOM05D001465 ORTHO05D001434 2.9e-19 100.5 267 34.1
Actinidia04155 Actinidia chinensis HOM05D003404 ORTHO05D004052 1.8e-16 91.3 287 26.1
FvH4_3g22840 Fragaria vesca HOM05D003404 ORTHO05D004052 5.1e-16 89.7 89 57.3
TPR.G40778 Trifolium pratense HOM05D003404 ORTHO05D004052 6.7e-16 89.4 69 59.4
TPR.G35220 Trifolium pratense HOM05D003404 ORTHO05D037367 1.9e-15 87.8 78 61.5
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 3.3e-15 87.0 60 70.0
TPR.G15895 Trifolium pratense HOM05D003404 ORTHO05D004052 3.1e-13 80.5 58 63.8
TPR.G35216 Trifolium pratense HOM05D003404 ORTHO05D037367 6.5e-11 72.8 70 72.9
VMungo1080G1281 Vigna mungo HOM05D003404 ORTHO05D004052 4.2e-10 70.1 37 86.5
Zm00001eb006600 Zea mays HOM05D003404 ORTHO05D004052 1.0e-08 65.5 42 71.4
TPR.G21811 Trifolium pratense HOM05D002870 ORTHO05D003241 2.3e-08 64.3 61 49.2
BcaC06g31225 Brassica carinata HOM05D003404 ORTHO05D004052 5.1e-08 63.2 63 65.1
Psat4g002600 Pisum sativum HOM05D003404 ORTHO05D037367 2.1e-06 57.8 61 70.5
TPR.G21366 Trifolium pratense HOM05D003404 ORTHO05D004052 3.7e-06 57.0 48 66.7


User provided reference genes

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