Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 8.6e-41 169.9 84 100.0
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 4.3e-40 167.5 82 100.0
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 1.6e-39 165.6 82 98.8
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 2.3e-17 92.0 71 62.0
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 3.0e-17 91.7 70 64.3
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 3.9e-17 91.3 84 57.1
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 7.3e-16 87.0 67 64.2
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 7.3e-16 87.0 68 58.8
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 1.6e-15 85.9 88 52.3
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 4.7e-15 84.3 67 64.2
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 6.2e-15 84.0 67 62.7
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 8.1e-15 83.6 82 51.2
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 1.1e-14 83.2 71 60.6
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 1.1e-14 83.2 72 58.3
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 1.8e-14 82.4 75 54.7
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 3.1e-14 81.6 73 54.8
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 8.9e-14 80.1 67 59.7
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 2.0e-13 79.0 67 58.2
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 2.6e-13 78.6 67 58.2
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 2.6e-13 78.6 67 58.2
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 4.4e-13 77.8 72 55.6
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 5.8e-13 77.4 66 59.1
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 5.8e-13 77.4 65 56.9
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 5.8e-13 77.4 64 56.2
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 5.8e-13 77.4 71 54.9
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 5.8e-13 77.4 83 48.2
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 7.6e-13 77.0 69 53.6
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 7.6e-13 77.0 69 55.1
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 7.6e-13 77.0 65 56.9
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 7.6e-13 77.0 67 56.7
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 7.6e-13 77.0 67 56.7
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 7.6e-13 77.0 69 56.5
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 9.9e-13 76.6 65 55.4
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 9.9e-13 76.6 76 53.9
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 9.9e-13 76.6 66 59.1
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 1.3e-12 76.3 71 53.5
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 1.7e-12 75.9 64 54.7
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 2.2e-12 75.5 71 53.5
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 2.2e-12 75.5 71 53.5
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 2.2e-12 75.5 69 53.6
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 2.2e-12 75.5 67 53.7
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 2.9e-12 75.1 70 58.6
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 2.9e-12 75.1 70 58.6
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 2.9e-12 75.1 64 59.4
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 2.9e-12 75.1 70 55.7
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 2.9e-12 75.1 76 56.6
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 2.9e-12 75.1 71 54.9
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 3.8e-12 74.7 74 51.4
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 3.8e-12 74.7 70 58.6
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 3.8e-12 74.7 70 58.6
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 3.8e-12 74.7 70 58.6
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 3.8e-12 74.7 71 52.1
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 3.8e-12 74.7 66 62.1
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 3.8e-12 74.7 66 62.1
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 6.4e-12 73.9 69 55.1
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 6.4e-12 73.9 70 55.7
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 6.4e-12 73.9 66 54.5
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 6.4e-12 73.9 71 52.1
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 8.4e-12 73.6 65 58.5
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 8.4e-12 73.6 70 55.7
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 8.4e-12 73.6 64 51.6
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 1.1e-11 73.2 65 56.9
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 1.9e-11 72.4 69 55.1
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 1.9e-11 72.4 71 52.1
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 1.9e-11 72.4 71 52.1
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 2.4e-11 72.0 64 54.7
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 2.4e-11 72.0 71 52.1
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 3.2e-11 71.6 64 56.2
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 5.4e-11 70.9 67 49.3
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 1.2e-10 69.7 69 52.2
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 2.7e-10 68.6 69 52.2
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 3.5e-10 68.2 65 49.2
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.5e-10 68.2 79 48.1
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.5e-10 68.2 79 48.1
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 6.0e-10 67.4 70 51.4
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 1.0e-09 66.6 64 51.6
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 1.0e-09 66.6 71 52.1
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 1.3e-09 66.2 70 50.0
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 3.9e-09 64.7 69 47.8
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 3.9e-09 64.7 72 47.2
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 5.1e-09 64.3 64 50.0
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 5.1e-09 64.3 69 49.3
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 6.6e-09 63.9 72 47.2
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 8.7e-09 63.5 68 47.1
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.1e-08 63.2 72 47.2
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 1.1e-08 63.2 64 48.4
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 1.9e-08 62.4 70 48.6
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 2.5e-08 62.0 71 46.5
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 3.3e-08 61.6 69 46.4
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 4.3e-08 61.2 88 42.0
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 1.2e-07 59.7 92 40.2
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 1.6e-07 59.3 71 45.1
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 2.1e-07 58.9 70 44.3
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 3.6e-07 58.2 70 44.3
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 3.6e-07 58.2 70 44.3
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 3.6e-07 58.2 72 45.8
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 4.7e-07 57.8 77 42.9
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 3.1e-06 55.1 70 42.9
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 3.1e-06 55.1 70 42.9
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 4.0e-06 54.7 75 42.7


User provided reference genes

Program Settings