Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 5.4e-81 304.3 155 100.0
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 7.4e-30 134.4 123 59.3
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.3e-29 133.7 119 59.7
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 1.6e-29 133.3 126 56.3
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 1.6e-29 133.3 119 59.7
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 1.6e-29 133.3 126 54.8
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 2.1e-29 132.9 128 53.9
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 4.8e-29 131.7 128 56.2
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 1.4e-28 130.2 120 59.2
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 1.4e-28 130.2 128 55.5
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 1.4e-28 130.2 128 55.5
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 1.4e-28 130.2 128 55.5
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 3.1e-28 129.0 119 58.0
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 6.9e-28 127.9 124 56.5
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 1.5e-27 126.7 132 49.2
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 2.0e-27 126.3 119 55.5
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 2.6e-27 125.9 125 54.4
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 2.6e-27 125.9 125 53.6
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 3.4e-27 125.6 130 54.6
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 3.4e-27 125.6 128 56.2
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 4.5e-27 125.2 127 49.6
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 5.8e-27 124.8 125 52.8
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 5.8e-27 124.8 122 55.7
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 1.0e-26 124.0 121 56.2
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 1.3e-26 123.6 126 50.8
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.3e-26 123.6 128 55.5
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 2.2e-26 122.9 126 52.4
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 2.9e-26 122.5 126 52.4
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 4.9e-26 121.7 119 53.8
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 6.5e-26 121.3 127 48.0
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 8.4e-26 120.9 116 55.2
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.4e-25 120.2 119 57.1
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.2e-25 119.0 119 55.5
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 3.2e-25 119.0 125 55.2
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 3.2e-25 119.0 126 54.8
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 3.2e-25 119.0 128 50.8
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 4.2e-25 118.6 121 56.2
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 7.1e-25 117.9 120 56.7
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 9.3e-25 117.5 119 54.6
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.2e-24 117.1 118 56.8
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.2e-24 117.1 132 48.5
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 1.6e-24 116.7 134 50.7
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 1.6e-24 116.7 129 48.8
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 4.6e-24 115.2 118 52.5
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 6.0e-24 114.8 116 50.9
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 6.0e-24 114.8 123 53.7
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 6.0e-24 114.8 134 49.3
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 7.9e-24 114.4 118 55.9
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 7.9e-24 114.4 124 54.0
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 7.9e-24 114.4 124 52.4
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.3e-23 113.6 135 49.6
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 1.3e-23 113.6 129 44.2
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 2.3e-23 112.8 143 49.0
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 2.3e-23 112.8 113 52.2
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 2.3e-23 112.8 118 50.8
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.3e-23 112.8 121 54.5
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 3.0e-23 112.5 120 50.8
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 5.1e-23 111.7 117 55.6
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 6.7e-23 111.3 118 54.2
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 8.7e-23 110.9 116 51.7
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 8.7e-23 110.9 128 46.9
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 1.1e-22 110.5 117 47.0
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.1e-22 110.5 115 55.7
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 1.3e-21 107.1 121 49.6
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 2.1e-21 106.3 119 49.6
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 2.8e-21 105.9 143 44.8
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 2.8e-21 105.9 119 50.4
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 8.2e-21 104.4 122 46.7
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 8.2e-21 104.4 120 47.5
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.4e-20 102.8 122 47.5
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 3.1e-20 102.4 129 42.6
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 3.1e-20 102.4 131 48.9
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 4.0e-20 102.1 126 45.2
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 5.3e-20 101.7 126 43.7
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 5.3e-20 101.7 134 43.3
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 1.5e-19 100.1 104 54.8
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 1.5e-19 100.1 119 47.9
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.6e-19 99.4 118 46.6
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 4.5e-19 98.6 127 45.7
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 7.6e-19 97.8 118 46.6
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.7e-18 96.7 126 43.7
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.2e-18 96.3 120 47.5
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.2e-18 96.3 131 45.0
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.9e-18 95.9 129 45.0
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 3.8e-18 95.5 115 49.6
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 5.0e-18 95.1 127 43.3
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 6.5e-18 94.7 129 43.4
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 8.4e-18 94.4 90 54.4
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.1e-17 94.0 125 45.6
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 1.9e-17 93.2 120 46.7
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 1.9e-17 93.2 88 56.8
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 4.2e-17 92.0 90 48.9
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 7.1e-17 91.3 129 43.4
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 7.1e-17 91.3 129 42.6
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 7.1e-17 91.3 132 40.9
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 9.3e-17 90.9 147 41.5
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 1.2e-16 90.5 128 43.0
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.6e-16 90.1 121 45.5
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 1.6e-16 90.1 131 42.0
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 1.6e-16 90.1 131 42.0
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 2.1e-16 89.7 91 50.5
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 2.1e-16 89.7 131 42.0
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 2.1e-16 89.7 142 40.1
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 2.1e-16 89.7 142 40.1
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.1e-16 89.7 120 45.0
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 2.7e-16 89.4 88 54.5
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.5e-16 89.0 122 47.5
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.5e-16 89.0 87 54.0
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 6.1e-16 88.2 129 41.1
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 6.1e-16 88.2 131 41.2
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 6.1e-16 88.2 129 41.1
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 6.1e-16 88.2 131 41.2
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 6.1e-16 88.2 129 41.9
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 6.1e-16 88.2 115 45.2
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 7.9e-16 87.8 121 50.4
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 7.9e-16 87.8 129 41.9
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 1.8e-15 86.7 89 49.4
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 2.3e-15 86.3 153 37.9
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 2.3e-15 86.3 153 37.9
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 2.3e-15 86.3 153 37.9
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 2.3e-15 86.3 133 39.1
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 3.0e-15 85.9 120 41.7
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 3.9e-15 85.5 149 38.3
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 3.9e-15 85.5 148 37.2
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 6.7e-15 84.7 126 41.3
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 6.7e-15 84.7 133 37.6
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 6.7e-15 84.7 104 44.2
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 6.7e-15 84.7 128 39.8
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 6.7e-15 84.7 144 39.6
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 1.1e-14 84.0 128 39.8
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 1.5e-14 83.6 122 41.0
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 3.3e-14 82.4 127 40.9
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 4.3e-14 82.0 121 40.5
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 7.4e-14 81.3 87 43.7
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 9.7e-14 80.9 73 58.9
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 1.3e-13 80.5 102 45.1
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.6e-13 80.1 143 37.1
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 2.8e-13 79.3 90 45.6
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 3.7e-13 79.0 89 44.9
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.4e-12 77.0 149 35.6
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 6.9e-12 74.7 80 50.0
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 6.9e-12 74.7 80 46.2
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 6.9e-12 74.7 141 34.8
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 1.5e-11 73.6 71 54.9
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.1e-08 63.2 67 53.7
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 2.7e-08 62.8 114 37.7
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 7.9e-08 61.2 128 32.8
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.3e-07 59.7 90 41.1
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 5.7e-06 55.1 61 49.2


User provided reference genes

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