Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.6e-205 719.2 354 100.0
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 6.7e-71 271.9 409 41.3
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 2.8e-69 266.5 393 42.2
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 2.2e-66 256.9 359 41.8
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.9e-66 256.5 398 40.5
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 6.5e-66 255.4 380 39.5
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 8.5e-66 255.0 427 39.1
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 3.2e-65 253.1 405 39.8
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 7.2e-65 251.9 352 42.9
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.1e-64 250.4 398 41.2
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 2.1e-64 250.4 390 42.3
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 2.7e-64 250.0 376 40.7
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 3.6e-64 249.6 390 40.3
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 3.6e-64 249.6 378 39.7
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 3.6e-64 249.6 397 40.8
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 1.0e-63 248.1 399 38.1
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 1.0e-63 248.1 397 40.6
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 3.0e-63 246.5 361 39.1
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 4.0e-63 246.1 361 40.4
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 5.2e-63 245.7 380 38.9
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 1.2e-62 244.6 366 43.4
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 3.4e-62 243.0 399 40.9
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 4.4e-62 242.7 399 39.3
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 5.7e-62 242.3 355 40.8
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 9.8e-62 241.5 401 39.9
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 2.2e-61 240.4 397 36.8
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.2e-61 240.4 404 36.9
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.2e-61 240.4 404 36.9
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.7e-61 239.6 397 36.8
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 3.7e-61 239.6 353 42.8
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.8e-61 239.2 389 39.6
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 4.8e-61 239.2 397 39.0
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 6.3e-61 238.8 394 36.8
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 6.3e-61 238.8 393 39.2
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.4e-60 237.7 397 38.8
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.4e-60 237.7 383 39.4
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.8e-60 237.3 398 38.9
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 1.8e-60 237.3 363 42.1
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.4e-60 236.9 397 36.5
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 4.1e-60 236.1 363 39.9
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 9.1e-60 235.0 411 38.0
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 9.1e-60 235.0 390 38.7
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.0e-59 233.8 397 38.0
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 2.0e-59 233.8 385 39.7
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 2.7e-59 233.4 393 37.7
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 3.5e-59 233.0 399 39.1
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 3.5e-59 233.0 365 38.6
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 4.5e-59 232.6 402 39.3
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 4.5e-59 232.6 396 39.6
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 5.9e-59 232.3 360 39.2
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.0e-58 231.5 396 36.1
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.3e-58 231.1 407 37.3
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 5.0e-58 229.2 402 37.1
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 6.6e-58 228.8 387 38.2
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.1e-57 228.0 388 39.2
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.1e-57 228.0 355 40.3
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.1e-57 228.0 399 39.1
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 1.5e-57 227.6 387 37.2
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.9e-57 227.3 359 39.6
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 1.9e-57 227.3 363 40.5
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 3.3e-57 226.5 400 38.5
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 7.2e-57 225.3 402 39.1
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 7.2e-57 225.3 402 39.1
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 7.2e-57 225.3 352 39.8
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 7.2e-57 225.3 354 39.8
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 2.8e-56 223.4 390 37.2
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 2.8e-56 223.4 397 37.5
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.8e-56 223.4 353 40.5
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 6.1e-56 222.2 386 37.3
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 6.1e-56 222.2 346 39.6
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.0e-55 221.5 394 37.3
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.4e-55 221.1 377 39.0
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.4e-55 221.1 344 38.4
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 5.2e-55 219.2 433 33.5
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 6.8e-55 218.8 355 38.3
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 8.9e-55 218.4 400 36.8
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 1.2e-54 218.0 405 36.5
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.2e-54 218.0 346 39.3
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.2e-54 218.0 389 37.3
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.2e-54 218.0 351 40.5
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 1.5e-54 217.6 400 34.8
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.0e-54 217.2 390 36.2
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.6e-54 216.9 398 36.7
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 2.6e-54 216.9 384 37.2
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 5.7e-54 215.7 366 41.0
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 9.8e-54 214.9 361 36.8
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.3e-53 214.5 395 35.9
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.3e-53 214.5 401 35.7
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 1.3e-53 214.5 385 36.4
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 5.4e-52 209.1 391 35.8
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.6e-51 207.6 363 35.8
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.6e-51 207.6 391 37.1
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 5.9e-51 205.7 369 37.4
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.3e-50 204.5 363 36.6
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 5.0e-50 202.6 405 34.8
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 1.5e-49 201.1 526 30.2
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 1.9e-49 200.7 351 36.5
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 3.3e-49 199.9 352 37.2
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 7.3e-49 198.7 350 39.4
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 7.3e-49 198.7 368 38.0
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.6e-48 197.6 392 36.0
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 2.8e-48 196.8 348 37.1
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 4.7e-48 196.1 349 38.1
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.3e-47 193.7 367 36.0
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 4.0e-47 193.0 413 33.4
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 5.2e-47 192.6 381 37.3
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 6.8e-47 192.2 378 34.4
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.0e-46 190.7 385 35.3
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.2e-45 187.2 384 35.2
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 4.9e-45 186.0 358 37.4
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 4.9e-45 186.0 350 35.1
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.4e-44 184.5 361 36.8
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 2.0e-43 180.6 380 33.7
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.3e-42 177.9 352 36.1
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 8.6e-42 175.3 350 34.9
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 8.6e-42 175.3 227 44.5
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 4.3e-41 172.9 238 42.4
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.3e-34 151.4 224 42.0
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 1.5e-33 147.9 359 29.8
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.9e-33 147.5 216 38.4
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 6.2e-32 142.5 122 57.4
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 8.9e-31 138.7 121 57.9
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.2e-30 138.3 163 49.1
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.2e-27 128.3 215 37.2
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.1e-25 121.7 212 36.8
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.9e-25 120.9 99 56.6
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 6.8e-23 112.5 450 25.1
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.9e-20 104.4 390 25.4
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.9e-20 104.4 390 25.4
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.4e-20 104.0 288 32.3
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 3.5e-19 100.1 306 30.1
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 6.0e-19 99.4 197 32.5
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.0e-14 84.3 126 39.7
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 5.8e-14 82.8 83 49.4
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 9.9e-14 82.0 83 49.4
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 2.5e-09 67.4 59 49.2
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.1e-07 62.0 65 50.8
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 9.9e-06 55.5 90 36.7


User provided reference genes

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