Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 6.0e-149 530.8 263 100.0
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 8.6e-148 526.9 263 98.9
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 2.2e-135 485.7 253 92.1
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 3.5e-133 478.4 253 89.7
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 3.0e-132 475.3 253 90.1
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 3.9e-132 474.9 253 90.5
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 8.7e-132 473.8 255 89.0
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.5e-131 473.0 256 89.8
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 1.9e-131 472.6 253 90.1
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 1.9e-131 472.6 253 89.7
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 2.5e-131 472.2 263 87.8
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 7.4e-131 470.7 253 90.1
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 1.3e-130 469.9 253 90.1
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 1.3e-130 469.9 256 89.1
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 2.8e-130 468.8 253 88.9
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 2.8e-130 468.8 253 88.9
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 2.8e-130 468.8 253 88.5
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 2.8e-130 468.8 253 88.5
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 4.8e-130 468.0 250 90.4
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 4.8e-130 468.0 253 88.9
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 4.8e-130 468.0 253 89.3
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 4.8e-130 468.0 253 88.5
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 8.1e-130 467.2 253 88.5
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 8.1e-130 467.2 253 88.9
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.1e-129 466.8 253 88.1
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 1.1e-129 466.8 255 88.6
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.4e-129 466.5 253 88.1
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.8e-129 466.1 250 90.0
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 2.4e-129 465.7 253 89.7
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 3.1e-129 465.3 253 87.7
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 3.1e-129 465.3 256 87.9
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 3.1e-129 465.3 256 87.9
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 3.1e-129 465.3 256 87.9
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 3.1e-129 465.3 253 88.9
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 3.1e-129 465.3 253 88.5
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 3.1e-129 465.3 255 87.1
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 5.3e-129 464.5 257 87.9
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 5.3e-129 464.5 253 88.1
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 6.9e-129 464.2 253 88.5
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 6.9e-129 464.2 255 87.1
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 6.9e-129 464.2 255 87.1
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 6.9e-129 464.2 253 88.9
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 6.9e-129 464.2 253 87.7
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 6.9e-129 464.2 253 87.0
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 9.0e-129 463.8 253 86.6
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 9.0e-129 463.8 253 87.7
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 9.0e-129 463.8 253 87.4
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 9.0e-129 463.8 253 88.5
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 9.0e-129 463.8 253 88.5
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 1.2e-128 463.4 256 87.1
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 1.5e-128 463.0 256 87.1
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 1.5e-128 463.0 256 86.7
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 1.5e-128 463.0 255 87.1
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 2.0e-128 462.6 253 87.4
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 3.4e-128 461.8 253 88.1
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 3.4e-128 461.8 255 85.9
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 3.4e-128 461.8 253 87.0
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 4.5e-128 461.5 255 87.5
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 5.8e-128 461.1 257 85.6
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 5.8e-128 461.1 253 87.7
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 5.8e-128 461.1 256 86.3
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 5.8e-128 461.1 253 86.6
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 7.6e-128 460.7 253 87.0
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 7.6e-128 460.7 256 87.1
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 9.9e-128 460.3 264 86.0
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 1.3e-127 459.9 253 87.7
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 1.3e-127 459.9 255 85.5
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.7e-127 459.5 253 87.0
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 1.7e-127 459.5 257 86.8
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 1.7e-127 459.5 257 86.4
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 2.2e-127 459.1 252 88.1
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 2.9e-127 458.8 253 87.4
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 3.8e-127 458.4 255 85.1
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 3.8e-127 458.4 255 86.3
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 4.9e-127 458.0 256 86.7
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 4.9e-127 458.0 256 86.3
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 6.4e-127 457.6 253 86.6
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 6.4e-127 457.6 256 85.9
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 6.4e-127 457.6 256 86.7
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 8.4e-127 457.2 253 86.2
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 8.4e-127 457.2 253 86.2
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 8.4e-127 457.2 253 87.7
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 8.4e-127 457.2 253 86.6
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 8.4e-127 457.2 253 87.0
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 8.4e-127 457.2 253 86.6
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 1.4e-126 456.4 253 87.0
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.4e-126 456.4 256 86.7
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.9e-126 456.1 256 86.3
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 2.4e-126 455.7 257 86.4
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 3.2e-126 455.3 253 86.2
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 3.2e-126 455.3 253 86.2
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 4.2e-126 454.9 256 86.3
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 5.5e-126 454.5 253 85.4
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 5.5e-126 454.5 253 85.8
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 5.5e-126 454.5 253 87.0
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 7.1e-126 454.1 253 84.6
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 7.1e-126 454.1 283 79.5
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 2.1e-125 452.6 257 85.6
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 2.1e-125 452.6 274 80.7
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 1.3e-124 449.9 253 86.2
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.8e-124 449.5 253 85.4
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 3.0e-124 448.7 244 88.1
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 1.5e-123 446.4 253 85.4
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 1.9e-123 446.0 242 89.7
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 1.9e-123 446.0 251 87.6
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 3.3e-123 445.3 250 87.6
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 1.3e-122 443.4 253 86.2
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 2.8e-122 442.2 254 84.3
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 3.7e-122 441.8 254 84.3
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 4.8e-122 441.4 257 83.7
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 3.1e-121 438.7 253 84.6
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 3.1e-121 438.7 253 84.6
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 4.0e-121 438.3 253 84.6
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 5.3e-121 438.0 253 84.2
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.5e-120 436.4 253 85.0
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 4.5e-120 434.9 247 85.4
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 1.3e-119 433.3 259 81.1
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 1.3e-119 433.3 258 82.9
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.7e-119 433.0 327 68.8
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 7.1e-118 427.6 265 80.0
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 7.9e-117 424.1 308 70.8
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 7.9e-117 424.1 253 80.6
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 7.9e-117 424.1 276 77.5
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 4.3e-115 418.3 255 82.0
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 9.6e-115 417.2 252 79.0
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 1.6e-114 416.4 222 89.6
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.1e-113 413.7 260 79.6
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.1e-113 413.7 260 79.6
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 3.1e-113 412.1 255 76.5
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.2e-112 410.2 222 88.7
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 1.0e-111 407.1 253 80.6
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 1.0e-111 407.1 237 81.0
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 5.0e-111 404.8 223 87.9
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 6.5e-111 404.4 279 74.9
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 9.3e-110 400.6 253 79.4
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 3.2e-102 375.6 255 74.9
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 1.1e-99 367.1 253 71.5
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 4.8e-98 361.7 259 71.8
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 1.4e-97 360.1 198 88.4
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 9.4e-94 347.4 358 55.0
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 1.2e-93 347.1 273 66.7
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 5.2e-92 341.7 183 89.1
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 2.1e-85 319.7 265 65.3
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 8.0e-85 317.8 157 94.9
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 3.0e-84 315.8 381 49.3
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 4.8e-82 308.5 158 90.5
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 6.1e-77 291.6 256 62.1
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 1.4e-73 280.4 253 59.7
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.3e-68 263.1 200 68.5
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 2.2e-66 256.5 238 52.9
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-63 246.1 138 84.1
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 3.5e-48 196.1 133 74.4
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 3.5e-48 196.1 133 74.4
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 1.7e-47 193.7 187 59.4
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 1.1e-33 147.9 142 56.3
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.3e-31 141.0 129 61.2
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 9.3e-25 118.2 88 68.2
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 1.3e-23 114.4 64 76.6
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 7.3e-22 108.6 83 67.5
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 7.3e-22 108.6 83 67.5
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 1.7e-18 97.4 65 73.8
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 8.7e-15 85.1 46 87.0
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.5e-14 84.3 49 73.5
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 7.6e-11 72.0 90 51.1
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 7.6e-11 72.0 90 51.1
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 2.2e-10 70.5 45 73.3
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 5.5e-09 65.9 39 84.6
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 3.9e-07 59.7 39 69.2
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 6.7e-07 58.9 34 85.3


User provided reference genes

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