Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 1.4e-212 742.7 378 100.0
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.9e-188 662.5 373 89.3
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 4.2e-188 661.4 373 87.7
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 5.5e-188 661.0 372 88.4
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 7.2e-188 660.6 373 88.7
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.6e-187 659.4 373 88.5
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 3.6e-187 658.3 373 89.0
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 3.0e-186 655.2 372 87.9
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 4.0e-186 654.8 373 87.9
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 1.1e-185 653.3 373 87.1
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 2.6e-185 652.1 373 87.9
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 4.4e-185 651.4 373 86.6
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 4.4e-185 651.4 372 87.4
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 1.7e-184 649.4 373 87.4
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 2.2e-184 649.0 372 87.9
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 4.8e-184 647.9 373 87.1
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 6.3e-184 647.5 372 87.1
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 8.2e-184 647.1 373 86.9
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 8.2e-184 647.1 373 86.9
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 1.4e-183 646.4 373 87.1
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 4.1e-183 644.8 373 86.3
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 5.3e-183 644.4 372 86.6
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 5.3e-183 644.4 371 86.8
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 5.3e-183 644.4 373 86.3
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 5.3e-183 644.4 373 87.4
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 5.3e-183 644.4 372 85.8
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 7.0e-183 644.0 373 86.6
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 7.0e-183 644.0 373 85.3
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 9.1e-183 643.7 373 85.8
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 9.1e-183 643.7 373 86.9
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 9.1e-183 643.7 372 86.8
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 9.1e-183 643.7 373 86.1
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.2e-182 643.3 372 86.0
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 1.2e-182 643.3 373 87.1
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 1.2e-182 643.3 373 86.1
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 1.6e-182 642.9 373 86.3
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 1.6e-182 642.9 373 85.8
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 1.6e-182 642.9 373 85.8
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 2.0e-182 642.5 372 85.8
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 2.7e-182 642.1 372 86.3
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 3.5e-182 641.7 373 86.6
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 3.5e-182 641.7 372 86.0
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 4.5e-182 641.3 373 86.3
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 4.5e-182 641.3 373 86.3
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 4.5e-182 641.3 373 85.8
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 4.5e-182 641.3 372 85.5
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 7.7e-182 640.6 372 86.3
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 1.0e-181 640.2 373 85.8
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 1.3e-181 639.8 371 86.8
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.3e-181 639.8 372 85.8
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 1.3e-181 639.8 373 85.3
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 2.2e-181 639.0 372 87.4
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.9e-181 638.6 381 84.8
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 2.9e-181 638.6 369 86.2
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 2.9e-181 638.6 373 85.5
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 3.8e-181 638.3 373 84.2
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 3.8e-181 638.3 372 86.0
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 5.0e-181 637.9 373 85.5
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 5.0e-181 637.9 372 86.0
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 6.5e-181 637.5 373 85.5
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 6.5e-181 637.5 373 85.3
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 1.1e-180 636.7 373 85.3
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 1.1e-180 636.7 372 85.8
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 1.5e-180 636.3 372 85.2
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 1.9e-180 636.0 372 86.3
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 3.2e-180 635.2 373 85.3
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.2e-180 635.2 373 84.7
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 4.2e-180 634.8 372 84.9
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 4.2e-180 634.8 372 85.8
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 5.5e-180 634.4 372 87.1
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 5.5e-180 634.4 371 85.2
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 9.4e-180 633.6 372 84.9
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 9.4e-180 633.6 373 84.5
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 1.2e-179 633.3 373 84.5
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 1.6e-179 632.9 372 84.4
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 2.7e-179 632.1 373 84.7
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 3.6e-179 631.7 372 84.9
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 4.7e-179 631.3 373 84.2
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 6.1e-179 630.9 372 84.7
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 8.0e-179 630.6 390 82.1
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 8.0e-179 630.6 373 85.3
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.0e-178 630.2 373 83.4
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.0e-178 630.2 371 83.8
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 1.4e-178 629.8 372 86.3
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.4e-178 629.8 392 82.7
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 4.0e-178 628.2 373 83.4
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 4.0e-178 628.2 373 85.0
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 5.2e-178 627.9 381 83.5
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 5.2e-178 627.9 373 83.9
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 1.2e-177 626.7 424 76.9
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 1.2e-177 626.7 424 76.9
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.2e-177 626.7 388 82.0
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 1.2e-177 626.7 373 82.6
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 1.5e-177 626.3 372 83.3
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 1.5e-177 626.3 374 84.8
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 2.0e-177 625.9 372 84.1
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 2.0e-177 625.9 372 83.9
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 2.0e-177 625.9 372 84.1
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 2.0e-177 625.9 372 84.1
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 2.0e-177 625.9 372 84.1
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 2.6e-177 625.5 373 83.1
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 2.6e-177 625.5 372 85.5
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 2.6e-177 625.5 373 83.6
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 3.4e-177 625.2 372 83.6
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 4.4e-177 624.8 372 83.9
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 4.4e-177 624.8 375 83.7
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 4.4e-177 624.8 373 83.9
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 9.8e-177 623.6 372 83.9
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 2.8e-176 622.1 373 83.9
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.8e-176 622.1 401 80.3
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 6.3e-176 620.9 372 83.3
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 6.3e-176 620.9 373 84.5
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 6.3e-176 620.9 382 83.0
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 1.4e-175 619.8 369 83.2
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 1.4e-175 619.8 372 83.1
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 2.4e-175 619.0 372 83.1
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 1.2e-174 616.7 372 82.8
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 1.2e-174 616.7 372 82.8
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 2.2e-173 612.5 403 78.2
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 1.5e-172 609.8 376 81.1
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 2.7e-171 605.5 339 90.0
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.6e-166 589.7 369 82.4
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 6.6e-165 584.3 334 87.1
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 8.6e-165 583.9 454 68.3
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.1e-164 583.6 363 80.7
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.9e-164 582.8 423 74.2
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 7.3e-164 580.9 340 85.3
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.1e-163 579.3 373 79.6
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.4e-162 576.6 339 84.7
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 2.3e-162 575.9 373 78.6
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 7.0e-159 564.3 351 79.2
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 1.5e-156 556.6 356 77.8
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.0e-149 533.9 362 77.6
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 1.5e-148 530.0 351 74.6
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 2.5e-148 529.3 353 72.2
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 5.2e-146 521.5 373 72.9
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 9.9e-137 490.7 284 85.6
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 7.1e-135 484.6 263 92.0
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 1.5e-132 476.9 349 67.9
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 2.4e-127 459.5 374 62.8
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 2.1e-123 446.4 350 64.0
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 7.4e-116 421.4 412 58.7
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 9.3e-111 404.4 230 89.1
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 1.9e-108 396.7 236 81.8
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.6e-107 393.7 225 87.6
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 2.1e-107 393.3 346 64.2
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 8.4e-104 381.3 217 86.6
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.9e-103 380.2 244 79.5
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 4.1e-98 362.5 205 89.3
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 8.5e-96 354.8 192 92.7
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 3.3e-84 316.2 288 61.1
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 2.9e-72 276.6 207 70.0
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 9.1e-66 255.0 147 86.4
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 4.2e-63 246.1 248 53.2
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 1.3e-51 208.0 134 76.1
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 1.9e-47 194.1 119 79.8
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 7.3e-47 192.2 143 64.3
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 6.4e-43 179.1 105 87.6
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.2e-38 164.9 150 63.3
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 7.5e-36 155.6 109 71.6
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 4.0e-29 133.3 178 40.4
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 1.9e-26 124.4 67 91.0
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 4.1e-26 123.2 82 72.0
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 1.6e-25 121.3 129 55.8
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 2.1e-25 120.9 244 36.1
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 2.7e-25 120.6 67 89.6
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 4.0e-21 106.7 69 75.4
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 4.0e-21 106.7 64 85.9
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 5.6e-15 86.3 101 53.5
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 2.4e-10 70.9 37 91.9
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 6.0e-09 66.2 113 35.4
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 1.3e-08 65.1 111 35.1
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 3.0e-08 63.9 60 50.0
Phvul.005G043500 Phaseolus vulgaris HOM05D002061 ORTHO05D002849 1.5e-07 61.6 382 22.3
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 4.3e-07 60.1 381 22.8
Cre05.g241850 Chlamydomonas reinhardtii HOM05D002061 ORTHO05D002849 3.6e-06 57.0 334 24.3
RcHm_v2.0_Chr4g0441981 Rosa chinensis HOM05D002061 ORTHO05D002849 8.1e-06 55.8 336 24.1
Sopen04g016030 Solanum pennellii HOM05D002061 ORTHO05D002849 8.1e-06 55.8 384 22.7


User provided reference genes

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