Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 2.4e-54 215.3 111 100.0
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 3.9e-49 198.0 109 91.7
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 6.6e-49 197.2 109 90.8
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 6.6e-49 197.2 109 90.8
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 1.1e-48 196.4 109 90.8
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 1.1e-48 196.4 110 89.1
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 1.1e-48 196.4 110 89.1
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 1.5e-48 196.1 110 89.1
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 1.9e-48 195.7 109 89.9
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 3.3e-48 194.9 109 89.0
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 3.3e-48 194.9 109 89.0
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 4.3e-48 194.5 109 89.9
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 5.6e-48 194.1 109 89.0
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 5.6e-48 194.1 109 89.9
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 5.6e-48 194.1 109 89.0
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 7.3e-48 193.7 109 89.9
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 9.6e-48 193.4 109 88.1
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 9.6e-48 193.4 109 89.0
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 9.6e-48 193.4 110 87.3
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 9.6e-48 193.4 110 87.3
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 1.2e-47 193.0 107 88.8
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 1.6e-47 192.6 109 88.1
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 1.6e-47 192.6 109 88.1
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 1.6e-47 192.6 108 88.9
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 1.6e-47 192.6 109 88.1
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 1.6e-47 192.6 109 89.0
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 1.6e-47 192.6 108 89.8
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 2.1e-47 192.2 109 88.1
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 2.8e-47 191.8 109 87.2
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 2.8e-47 191.8 109 87.2
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 2.8e-47 191.8 110 86.4
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 3.6e-47 191.4 108 88.0
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 3.6e-47 191.4 108 88.0
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 4.7e-47 191.0 109 87.2
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 4.7e-47 191.0 107 88.8
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 4.7e-47 191.0 109 87.2
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 6.2e-47 190.7 109 89.0
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 6.2e-47 190.7 109 87.2
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 8.1e-47 190.3 109 87.2
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 8.1e-47 190.3 109 86.2
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 1.1e-46 189.9 109 86.2
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 1.4e-46 189.5 109 87.2
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 1.4e-46 189.5 108 88.9
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 1.8e-46 189.1 109 85.3
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 1.8e-46 189.1 109 85.3
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 3.1e-46 188.3 110 85.5
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 3.1e-46 188.3 109 86.2
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 4.0e-46 188.0 115 84.3
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 4.0e-46 188.0 109 86.2
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 5.2e-46 187.6 109 85.3
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 5.2e-46 187.6 110 83.6
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 9.0e-46 186.8 114 83.3
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 1.2e-45 186.4 109 84.4
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 1.2e-45 186.4 109 84.4
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.2e-45 186.4 109 87.2
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 1.5e-45 186.0 109 88.1
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 2.0e-45 185.7 109 85.3
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 2.0e-45 185.7 109 84.4
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 2.0e-45 185.7 109 84.4
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 2.0e-45 185.7 109 84.4
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 2.0e-45 185.7 109 84.4
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 2.0e-45 185.7 109 84.4
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 2.0e-45 185.7 109 82.6
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 3.4e-45 184.9 111 84.7
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 4.4e-45 184.5 110 82.7
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 5.8e-45 184.1 109 83.5
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 7.6e-45 183.7 109 83.5
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 7.6e-45 183.7 108 86.1
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 9.9e-45 183.3 109 84.4
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 9.9e-45 183.3 109 84.4
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.7e-44 182.6 108 84.3
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.7e-44 182.6 108 84.3
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.7e-44 182.6 108 84.3
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 2.2e-44 182.2 109 83.5
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 2.9e-44 181.8 110 85.5
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 3.8e-44 181.4 114 82.5
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 4.9e-44 181.0 109 82.6
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 4.9e-44 181.0 108 83.3
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 4.9e-44 181.0 108 87.0
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 6.4e-44 180.6 110 84.5
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 6.4e-44 180.6 114 82.5
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 6.4e-44 180.6 109 80.7
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 6.4e-44 180.6 109 80.7
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 1.4e-43 179.5 130 75.4
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 1.9e-43 179.1 109 81.7
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 1.9e-43 179.1 109 83.5
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 9.3e-43 176.8 119 79.8
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 1.2e-42 176.4 109 78.9
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 1.2e-42 176.4 136 72.1
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 1.2e-42 176.4 98 89.8
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 1.7e-41 172.6 108 78.7
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 3.9e-41 171.4 107 79.4
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 8.7e-41 170.2 96 86.5
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 1.5e-40 169.5 107 79.4
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 4.3e-40 167.9 165 58.8
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 4.3e-40 167.9 165 58.8
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 4.9e-36 154.5 84 89.3
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 8.4e-36 153.7 103 73.8
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 4.2e-35 151.4 109 74.3
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 2.1e-34 149.1 108 71.3
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 1.0e-33 146.7 97 78.4
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 1.1e-32 143.3 81 90.1
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 3.7e-31 138.3 107 65.4
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.0e-29 132.5 82 84.1
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 4.9e-28 127.9 109 65.1
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.1e-27 126.7 81 80.2
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 3.5e-26 121.7 110 58.2
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 2.5e-24 115.5 133 54.1
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 4.5e-21 104.8 110 54.5
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 3.8e-20 101.7 59 83.1
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 6.5e-20 100.9 59 84.7
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 8.4e-20 100.5 56 89.3
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 4.6e-18 94.7 90 52.2
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 7.9e-18 94.0 49 91.8
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 6.3e-15 84.3 54 70.4
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 2.1e-10 69.3 105 41.9
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 1.7e-07 59.7 38 76.3


User provided reference genes

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