Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 5.7e-184 647.5 340 100.0
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 6.4e-111 404.8 360 60.3
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 7.1e-110 401.4 340 61.2
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 3.0e-108 396.0 348 58.9
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 1.1e-107 394.0 341 60.1
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 2.5e-107 392.9 342 59.9
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 4.3e-107 392.1 342 59.1
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.1e-105 387.5 342 60.2
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 4.0e-105 385.6 343 60.1
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 4.0e-105 385.6 349 57.3
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 9.0e-105 384.4 340 57.6
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 2.6e-104 382.9 344 58.4
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 4.4e-104 382.1 342 58.5
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 4.4e-104 382.1 340 58.2
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 5.8e-104 381.7 349 58.5
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 1.7e-103 380.2 342 58.5
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 2.2e-103 379.8 356 58.7
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 4.9e-103 378.6 357 59.7
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 4.9e-103 378.6 351 58.4
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 4.9e-103 378.6 380 56.1
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 6.4e-103 378.3 358 56.1
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.4e-102 377.1 343 59.5
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 1.9e-102 376.7 343 59.2
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 2.4e-102 376.3 362 57.7
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 2.4e-102 376.3 352 57.1
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 2.4e-102 376.3 343 58.9
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.2e-102 375.9 341 58.9
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 5.4e-102 375.2 343 59.2
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 5.4e-102 375.2 343 58.9
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 7.1e-102 374.8 332 59.0
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 9.3e-102 374.4 347 58.8
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.2e-101 374.0 340 57.6
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 1.6e-101 373.6 343 58.9
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 1.6e-101 373.6 342 58.8
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.7e-101 372.9 341 58.7
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 2.7e-101 372.9 340 56.5
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 2.7e-101 372.9 342 57.9
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 3.5e-101 372.5 343 59.2
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 6.0e-101 371.7 350 57.4
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 1.3e-100 370.5 350 56.3
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.3e-100 370.5 358 57.5
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 3.0e-100 369.4 352 57.1
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 8.7e-100 367.9 344 58.1
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 8.7e-100 367.9 342 57.6
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 1.1e-99 367.5 352 56.8
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.5e-99 367.1 342 57.0
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 1.5e-99 367.1 343 58.3
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 9.6e-99 364.4 344 55.5
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 1.6e-98 363.6 343 57.4
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 2.8e-98 362.8 353 55.8
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 4.8e-98 362.1 355 55.8
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 4.8e-98 362.1 355 54.9
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 6.2e-98 361.7 347 58.8
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 1.8e-97 360.1 341 56.9
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 5.3e-97 358.6 344 55.8
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 6.9e-97 358.2 347 55.9
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 6.9e-97 358.2 342 55.8
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 6.9e-97 358.2 342 55.0
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 6.9e-97 358.2 343 54.8
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 9.0e-97 357.8 343 56.9
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 9.0e-97 357.8 345 54.2
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 9.0e-97 357.8 345 54.2
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 2.6e-96 356.3 345 56.8
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 2.6e-96 356.3 345 56.8
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 3.4e-96 355.9 352 56.8
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 3.4e-96 355.9 355 54.6
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 3.4e-96 355.9 344 56.1
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 4.5e-96 355.5 350 56.9
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 9.9e-96 354.4 350 56.9
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 1.3e-95 354.0 342 55.8
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 2.2e-95 353.2 360 54.7
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 2.9e-95 352.8 348 54.9
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 2.9e-95 352.8 356 55.3
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 3.8e-95 352.4 350 56.6
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 3.8e-95 352.4 342 56.4
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 3.8e-95 352.4 346 55.8
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 6.4e-95 351.7 357 56.0
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 1.1e-94 350.9 386 49.5
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.1e-94 350.9 329 56.8
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 1.9e-94 350.1 343 55.1
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 3.2e-94 349.4 349 55.6
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 1.2e-93 347.4 351 57.0
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.6e-93 347.1 360 53.9
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 1.6e-93 347.1 345 55.9
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 7.9e-93 344.7 354 55.4
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.3e-92 344.0 342 53.8
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.8e-92 343.6 360 53.3
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 2.3e-92 343.2 359 54.3
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 2.3e-92 343.2 360 53.3
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 3.9e-92 342.4 345 53.6
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.1e-91 340.9 360 53.1
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.5e-91 340.5 339 52.5
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.5e-91 340.5 361 52.6
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.9e-91 340.1 345 53.9
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 2.5e-91 339.7 346 53.5
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 3.3e-91 339.3 345 53.9
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.6e-91 338.6 360 52.8
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 7.4e-91 338.2 345 53.0
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 6.2e-90 335.1 344 52.6
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 6.2e-90 335.1 345 52.8
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 6.9e-89 331.6 339 51.6
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 9.0e-89 331.3 348 52.9
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 2.0e-88 330.1 350 54.6
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.3e-87 327.4 347 51.0
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 2.9e-87 326.2 344 51.5
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 1.4e-86 323.9 348 54.0
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 1.9e-86 323.6 356 51.1
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 4.2e-86 322.4 365 51.2
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 4.2e-86 322.4 365 51.2
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 3.0e-84 316.2 281 58.7
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 5.8e-80 302.0 321 50.8
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 8.4e-79 298.1 367 50.4
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 7.1e-78 295.0 338 48.8
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 3.9e-76 289.3 301 53.8
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 2.2e-74 283.5 323 48.3
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 1.8e-68 263.8 380 45.3
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.7e-66 256.1 255 54.5
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 3.4e-64 249.6 353 47.3
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.2e-63 246.9 354 42.4
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.9e-63 246.5 357 42.6
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 5.5e-62 242.3 259 53.7
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 4.7e-61 239.2 365 44.9
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 7.9e-61 238.4 183 66.7
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 3.1e-57 226.5 187 62.0
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 2.6e-56 223.4 341 44.0
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 4.7e-53 212.6 218 54.6
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 8.0e-53 211.8 215 54.9
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 1.8e-52 210.7 360 41.1
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.1e-49 201.4 196 55.6
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 6.5e-47 192.2 198 55.1
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 1.2e-45 188.0 228 46.9
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 1.2e-45 188.0 376 37.0
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 1.4e-44 184.5 176 53.4
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 6.8e-36 155.6 372 33.9
ATR0019G039 Amborella trichopoda HOM05D004877 ORTHO05D005942 1.3e-31 141.4 93 86.0
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 2.8e-29 133.7 356 32.6
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 3.4e-27 126.7 373 32.2
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 6.4e-26 122.5 146 46.6
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 3.2e-25 120.2 132 50.8
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 1.3e-23 114.8 86 62.8
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 1.1e-22 111.7 85 58.8
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 1.5e-22 111.3 85 58.8
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 4.3e-22 109.8 155 39.4
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.8e-20 104.4 85 61.2
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 2.9e-18 97.1 153 36.6
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 4.3e-14 83.2 143 33.6
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.6e-13 81.3 127 43.3
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.6e-13 81.3 80 58.8
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 1.1e-12 78.6 55 67.3
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.4e-12 78.2 122 40.2
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 1.3e-10 71.6 72 47.2
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 2.9e-10 70.5 41 73.2
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.1e-09 68.6 157 33.8
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 3.2e-09 67.0 169 30.2
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.2e-08 65.1 122 37.7
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 3.0e-07 60.5 53 50.9
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.1e-06 58.5 43 62.8


User provided reference genes

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