Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 0.0e+00 1151.3 581 100.0
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 3.4e-237 825.1 515 79.4
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 7.8e-234 813.9 515 79.0
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 3.6e-231 805.1 515 77.1
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 3.4e-229 798.5 590 71.4
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 3.4e-229 798.5 590 71.4
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 4.9e-228 794.7 575 71.0
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 3.2e-227 792.0 518 78.2
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.1e-226 789.3 516 75.8
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 2.1e-226 789.3 564 72.0
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 4.3e-224 781.6 513 75.0
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 5.6e-224 781.2 513 75.8
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 9.6e-224 780.4 571 70.8
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.6e-223 779.6 588 69.2
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 5.3e-222 774.6 512 76.0
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 6.9e-222 774.2 509 77.4
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.2e-221 773.5 512 75.8
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 2.0e-221 772.7 584 68.0
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 5.8e-221 771.2 555 71.5
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 7.6e-221 770.8 582 68.2
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 1.3e-220 770.0 511 76.9
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.7e-220 769.6 534 73.8
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 3.8e-220 768.5 585 68.7
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 4.9e-220 768.1 578 68.7
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 8.4e-220 767.3 532 72.7
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 4.2e-219 765.0 584 68.8
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 5.4e-219 764.6 544 72.4
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 7.9e-218 760.8 570 74.2
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.8e-217 759.6 509 75.4
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.3e-217 759.2 507 74.2
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.0e-217 758.8 600 65.7
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 1.9e-216 756.1 523 72.3
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 2.5e-216 755.7 509 74.1
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 9.6e-216 753.8 512 73.2
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.6e-215 753.1 592 66.9
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.6e-215 753.1 513 74.7
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 2.1e-215 752.7 573 68.4
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 2.8e-215 752.3 513 73.9
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.8e-215 752.3 511 73.2
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 3.7e-215 751.9 512 73.2
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 1.4e-214 750.0 564 70.0
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 5.3e-214 748.0 513 74.5
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 1.2e-213 746.9 578 68.0
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 1.5e-213 746.5 509 73.9
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 2.6e-213 745.7 511 73.2
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 3.4e-213 745.3 533 70.5
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 3.4e-213 745.3 509 74.1
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 9.9e-213 743.8 509 74.1
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 9.9e-213 743.8 543 69.2
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 3.8e-212 741.9 518 72.4
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 4.9e-212 741.5 549 69.4
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 1.4e-211 740.0 515 72.4
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 2.4e-211 739.2 593 65.8
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 4.2e-211 738.4 576 66.8
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 1.2e-210 736.9 528 71.8
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 1.2e-210 736.9 519 72.3
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 4.6e-210 734.9 513 72.9
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 1.0e-209 733.8 513 72.7
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.3e-209 733.4 532 71.2
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 3.0e-209 732.3 521 72.0
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 3.9e-209 731.9 515 73.0
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 2.5e-208 729.2 544 66.7
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 4.3e-208 728.4 515 70.3
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 4.3e-208 728.4 515 72.4
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.3e-207 726.9 587 65.2
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.6e-207 726.5 584 63.9
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 3.7e-207 725.3 515 70.1
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 1.1e-206 723.8 514 72.4
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 1.4e-206 723.4 574 64.3
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 1.8e-206 723.0 513 69.0
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 1.8e-206 723.0 513 69.2
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 1.8e-206 723.0 513 69.0
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 1.8e-206 723.0 513 69.2
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 3.1e-206 722.2 579 65.1
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 4.0e-206 721.8 594 64.3
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 6.9e-206 721.1 583 64.5
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 9.0e-206 720.7 530 69.6
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 9.0e-206 720.7 515 69.5
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 2.0e-205 719.5 513 68.8
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 2.6e-205 719.2 577 64.0
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 3.4e-205 718.8 585 64.3
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 1.0e-204 717.2 554 66.2
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 3.8e-204 715.3 513 69.4
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 3.8e-204 715.3 630 61.7
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.9e-201 705.3 622 61.3
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 1.3e-199 700.3 518 69.7
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 5.3e-198 694.9 509 69.9
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.7e-196 689.9 465 75.1
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 7.2e-195 684.5 515 69.3
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 5.1e-193 678.3 532 63.5
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 2.5e-192 676.0 462 72.7
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 4.3e-192 675.2 639 59.6
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 4.1e-190 668.7 515 68.5
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 9.4e-187 657.5 586 61.1
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 1.6e-186 656.8 515 65.6
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 6.7e-185 651.4 568 61.8
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 4.4e-184 648.7 464 70.7
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 5.7e-184 648.3 535 64.3
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 8.2e-183 644.4 520 63.8
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 2.3e-177 626.3 480 65.4
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.9e-177 625.5 593 57.3
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.9e-171 606.7 381 79.3
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.7e-170 602.8 477 62.3
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 4.7e-162 575.5 456 65.6
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 5.4e-158 562.0 444 65.5
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.6e-154 549.3 528 57.2
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.9e-140 502.7 444 55.6
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 1.1e-139 501.1 350 73.1
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 3.1e-137 493.0 512 52.5
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 2.0e-136 490.3 481 53.8
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.4e-134 484.2 446 57.2
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 8.6e-132 474.9 490 52.4
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 1.1e-129 468.0 438 53.4
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 5.8e-120 435.6 322 70.2
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 6.4e-119 432.2 309 73.1
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.4e-118 431.0 509 50.7
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.2e-112 411.4 266 76.7
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 9.9e-112 408.3 394 56.9
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 9.3e-110 401.7 489 45.6
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.1e-91 341.7 282 59.9
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 3.0e-84 317.0 204 76.0
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 7.7e-80 302.4 287 57.8
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 5.7e-75 286.2 202 69.8
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 2.6e-72 277.3 262 52.3
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 5.5e-70 269.6 173 76.3
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 7.2e-70 269.2 278 54.0
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.5e-64 251.5 405 38.5
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.5e-62 244.2 175 67.4
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 1.4e-60 238.4 162 74.7
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.8e-57 228.0 128 86.7
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 9.1e-57 225.7 270 49.3
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 1.2e-56 225.3 291 45.0
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 9.1e-49 199.1 113 85.8
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.3e-44 184.5 128 71.1
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.0e-44 184.1 177 58.2
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.1e-41 175.6 272 41.9
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 4.9e-34 150.2 158 53.2
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 6.3e-34 149.8 122 61.5
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 1.7e-31 141.7 106 67.0
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.9e-31 140.6 95 73.7
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 6.1e-29 133.3 269 34.9
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 3.7e-26 124.0 123 51.2
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.9e-25 121.7 233 38.6
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 2.0e-24 118.2 268 34.3
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.3e-23 114.8 105 55.2
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 1.5e-22 112.1 83 65.1
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 8.9e-20 102.8 88 60.2
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 5.8e-19 100.1 56 92.9
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 9.8e-19 99.4 89 55.1
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.7e-18 98.6 86 55.8
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 1.9e-17 95.1 71 64.8
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 1.6e-16 92.0 57 82.5
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 2.7e-16 91.3 71 62.0
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 6.6e-15 86.7 53 83.0
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 7.6e-11 73.2 246 30.5
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 2.2e-10 71.6 59 57.6
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 2.9e-10 71.2 141 34.8
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 5.4e-09 67.0 40 82.5
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 2.1e-08 65.1 295 24.7
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 1.0e-07 62.8 36 80.6
CDE02G0724 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 8.6e-07 59.7 54 57.4


User provided reference genes

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