Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.0e-107 391.3 187 100.0
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 7.1e-104 380.6 187 95.2
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 1.1e-83 313.5 185 77.3
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 6.9e-83 310.8 184 76.1
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 3.4e-82 308.5 185 74.6
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 3.4e-82 308.5 187 73.8
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.7e-81 306.2 185 74.1
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 2.2e-81 305.8 185 74.1
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 2.2e-81 305.8 185 75.1
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 2.9e-81 305.4 185 75.1
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 2.9e-81 305.4 185 74.1
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 2.9e-81 305.4 185 74.1
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 3.8e-81 305.1 185 74.6
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 3.8e-81 305.1 185 73.0
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 3.8e-81 305.1 185 73.0
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 5.0e-81 304.7 185 73.5
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 5.0e-81 304.7 185 74.1
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 6.5e-81 304.3 185 74.1
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 8.5e-81 303.9 185 73.5
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 8.5e-81 303.9 185 73.5
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 8.5e-81 303.9 185 73.5
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 8.5e-81 303.9 185 73.5
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 1.9e-80 302.8 185 74.1
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 2.5e-80 302.4 185 74.1
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 2.5e-80 302.4 185 73.0
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 3.2e-80 302.0 185 73.5
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 4.2e-80 301.6 185 73.0
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 4.2e-80 301.6 185 73.5
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 5.5e-80 301.2 185 73.0
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 5.5e-80 301.2 185 74.1
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 7.2e-80 300.8 185 73.5
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 7.2e-80 300.8 185 73.0
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 7.2e-80 300.8 186 74.7
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 9.4e-80 300.4 185 74.1
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 1.2e-79 300.1 185 73.5
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 2.7e-79 298.9 185 73.0
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 2.7e-79 298.9 187 71.1
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 6.1e-79 297.7 185 73.0
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 6.1e-79 297.7 185 71.4
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 7.9e-79 297.4 187 70.6
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.4e-78 296.6 186 74.2
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 1.4e-78 296.6 181 74.6
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 2.3e-78 295.8 185 72.4
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 2.3e-78 295.8 185 71.4
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 6.7e-78 294.3 185 71.9
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 6.7e-78 294.3 185 70.8
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 6.7e-78 294.3 185 70.8
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 1.5e-77 293.1 185 71.9
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 1.5e-77 293.1 185 71.9
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 2.0e-77 292.7 187 71.7
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 2.5e-77 292.4 185 71.4
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 3.3e-77 292.0 185 70.8
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 4.3e-77 291.6 181 72.4
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 7.4e-77 290.8 185 70.3
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 7.4e-77 290.8 187 70.6
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 7.4e-77 290.8 178 74.7
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 7.4e-77 290.8 178 74.7
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 9.7e-77 290.4 185 69.7
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 1.7e-76 289.7 186 72.0
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.7e-76 289.7 186 70.4
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 2.2e-76 289.3 185 69.7
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 2.8e-76 288.9 185 70.3
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 3.7e-76 288.5 185 70.3
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 8.2e-76 287.3 185 70.3
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 8.2e-76 287.3 167 76.0
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.4e-75 286.6 185 68.6
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.8e-75 286.2 170 72.4
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 2.4e-75 285.8 185 69.7
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 2.0e-74 282.7 185 68.6
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 2.6e-74 282.3 185 68.6
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 3.4e-74 282.0 176 71.6
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 7.7e-74 280.8 188 70.7
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 7.7e-74 280.8 187 71.1
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 1.0e-73 280.4 188 70.7
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 1.0e-73 280.4 185 70.3
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 1.3e-73 280.0 163 75.5
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 1.7e-73 279.6 188 70.2
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 1.7e-73 279.6 188 70.2
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 1.7e-73 279.6 188 70.2
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 1.7e-73 279.6 188 70.2
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 2.2e-73 279.3 185 69.7
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 2.9e-73 278.9 188 70.2
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 5.0e-73 278.1 176 73.3
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 6.5e-73 277.7 160 76.2
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 6.5e-73 277.7 170 72.4
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.1e-72 276.9 186 69.9
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 1.1e-72 276.9 186 69.9
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 1.1e-72 276.9 222 61.3
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.4e-72 276.6 187 69.0
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 1.4e-72 276.6 186 69.4
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 4.2e-72 275.0 186 69.9
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.2e-71 273.5 187 67.4
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 1.2e-71 273.5 162 72.8
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 7.9e-71 270.8 187 66.8
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 7.9e-71 270.8 187 66.8
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 7.9e-71 270.8 187 66.8
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.0e-70 270.4 184 69.0
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 1.0e-70 270.4 187 65.2
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.8e-70 269.6 187 66.8
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 3.9e-70 268.5 185 67.0
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 6.7e-70 267.7 187 66.3
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.0e-69 266.2 187 67.9
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 2.6e-69 265.8 188 68.1
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 2.6e-69 265.8 188 68.1
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 2.6e-69 265.8 188 68.1
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 2.6e-69 265.8 188 68.1
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 2.6e-69 265.8 188 68.1
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 5.7e-69 264.6 188 67.6
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 5.7e-69 264.6 187 65.2
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 5.7e-69 264.6 187 65.2
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.1e-67 260.4 187 65.2
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 1.4e-67 260.0 189 63.5
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 3.1e-67 258.8 187 63.1
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 4.1e-67 258.5 173 67.6
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.9e-65 252.3 152 73.7
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.9e-64 249.6 145 75.2
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.9e-64 249.6 153 69.9
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.2e-64 248.4 152 72.4
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 4.2e-64 248.4 159 72.3
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 4.7e-63 245.0 134 79.9
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 4.7e-63 245.0 158 70.9
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 5.2e-62 241.5 159 71.1
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 2.6e-61 239.2 143 76.2
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 1.4e-59 233.4 185 61.6
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.0e-57 227.3 157 68.2
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 6.5e-57 224.6 164 64.6
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 8.5e-57 224.2 160 66.9
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 2.1e-55 219.5 188 55.9
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 1.2e-53 213.8 115 77.4
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 1.7e-52 209.9 149 63.8
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 2.2e-52 209.5 184 53.3
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 3.1e-51 205.7 187 49.2
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 7.0e-51 204.5 186 51.1
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 5.5e-48 194.9 183 48.6
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.7e-45 184.9 101 78.2
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 8.6e-41 171.0 112 73.2
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 8.9e-38 161.0 110 65.5
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 2.0e-37 159.8 83 84.3
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 1.9e-32 143.3 99 66.7
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 1.6e-31 140.2 79 78.5
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 1.3e-28 130.6 99 60.6
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 6.4e-28 128.3 85 70.6
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.4e-27 127.1 89 65.2
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 3.3e-24 115.9 72 70.8
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 4.4e-21 105.5 85 57.6
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.9e-11 73.6 53 62.3


User provided reference genes

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