Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 0.0e+00 1095.5 568 100.0
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 3.7e-252 874.8 570 78.1
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 5.3e-251 870.9 571 77.9
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 5.5e-248 860.9 568 78.2
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 3.5e-247 858.2 569 77.3
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 4.8e-244 847.8 570 76.0
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 7.6e-242 840.5 572 75.0
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 3.5e-239 831.6 569 74.7
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 1.8e-238 829.3 569 74.7
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.5e-237 826.2 569 74.5
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 9.7e-237 823.5 569 74.0
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.8e-236 821.2 576 73.1
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 6.3e-236 820.8 573 73.6
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 4.1e-235 818.1 571 74.1
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 6.9e-235 817.4 567 73.4
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 5.9e-234 814.3 572 72.6
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 1.9e-232 809.3 567 73.0
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 2.5e-232 808.9 548 75.5
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.2e-231 806.6 573 74.5
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 1.2e-231 806.6 570 73.3
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.1e-231 805.8 575 72.5
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 3.6e-231 805.1 569 73.5
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 6.1e-231 804.3 569 72.8
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 6.1e-231 804.3 571 72.2
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 1.0e-230 803.5 575 73.4
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 2.3e-230 802.4 574 73.0
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 3.0e-230 802.0 571 73.0
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 5.1e-230 801.2 569 72.6
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 5.1e-230 801.2 580 71.7
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 1.9e-229 799.3 575 71.7
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 2.5e-229 798.9 583 71.9
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 7.4e-229 797.3 571 72.3
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 7.4e-229 797.3 591 71.1
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 1.4e-227 793.1 583 71.5
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 1.8e-227 792.7 574 72.0
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 3.1e-227 792.0 568 72.4
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 4.1e-227 791.6 569 71.7
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 1.5e-226 789.6 570 71.8
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 2.6e-226 788.9 573 71.4
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 1.7e-225 786.2 572 71.7
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 2.5e-224 782.3 570 73.0
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 1.2e-223 780.0 577 71.1
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 4.7e-223 778.1 592 69.6
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 7.9e-223 777.3 571 70.9
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 1.8e-222 776.2 571 70.6
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 1.8e-222 776.2 571 69.9
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 6.7e-222 774.2 572 72.2
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 1.1e-221 773.5 569 70.8
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 5.7e-221 771.2 569 70.8
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.3e-220 770.0 574 71.6
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 3.7e-220 768.5 574 71.4
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 2.4e-219 765.8 572 70.8
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 4.1e-219 765.0 574 70.2
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 1.2e-218 763.5 572 71.3
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 4.5e-218 761.5 572 71.2
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 7.7e-218 760.8 572 71.2
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 1.0e-217 760.4 569 70.1
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 5.0e-217 758.1 573 68.8
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 5.0e-217 758.1 570 69.6
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 6.5e-217 757.7 530 74.3
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.9e-216 756.1 573 68.4
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 3.2e-216 755.4 572 68.5
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 9.4e-216 753.8 568 70.8
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.6e-215 753.1 577 68.8
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 2.1e-215 752.7 573 70.0
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.1e-215 752.7 573 68.2
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.7e-215 752.3 573 68.2
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 2.7e-215 752.3 631 64.3
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.4e-214 750.0 562 71.5
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 5.7e-213 744.6 570 70.7
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 4.8e-212 741.5 575 68.7
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 1.1e-211 740.3 561 69.7
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 2.4e-211 739.2 577 69.8
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 5.3e-211 738.0 600 65.2
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 1.6e-210 736.5 554 69.7
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 2.9e-209 732.3 568 67.8
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 3.6e-207 725.3 574 66.7
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 4.0e-206 721.8 586 67.7
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 5.2e-206 721.5 569 66.8
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 1.5e-205 719.9 673 60.0
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 2.0e-205 719.5 564 69.0
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 2.8e-204 715.7 572 68.9
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 3.7e-204 715.3 582 67.4
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 5.3e-203 711.4 515 71.5
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 3.5e-202 708.8 566 67.0
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 5.5e-200 701.4 540 68.5
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 3.6e-199 698.7 737 54.4
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 7.5e-197 691.0 569 65.0
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 8.3e-196 687.6 590 64.9
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 7.0e-195 684.5 551 68.4
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 1.2e-194 683.7 506 69.8
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 1.6e-194 683.3 570 64.4
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 4.5e-194 681.8 558 65.1
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 1.3e-193 680.2 554 65.7
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 1.3e-193 680.2 554 65.7
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 1.3e-193 680.2 554 65.7
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 2.3e-193 679.5 550 64.9
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 8.6e-193 677.6 554 65.2
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 1.1e-192 677.2 565 64.2
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 9.5e-192 674.1 554 65.2
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 2.8e-191 672.5 582 62.5
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 8.9e-190 667.5 562 64.2
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 1.8e-187 659.8 569 63.4
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 1.2e-183 647.1 517 66.0
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 1.2e-181 640.6 569 61.5
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 4.9e-180 635.2 591 60.6
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 7.8e-178 627.9 576 60.9
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 2.5e-176 622.9 488 66.2
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 2.7e-170 602.8 417 73.9
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 1.6e-143 513.8 600 52.2
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.0e-137 494.6 613 49.9
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 2.4e-134 483.4 385 67.0
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 2.9e-124 449.9 478 55.6
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 1.3e-121 441.0 507 52.5
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 1.3e-121 441.0 507 52.5
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 1.3e-121 441.0 507 52.5
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 3.1e-110 403.3 262 76.7
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 4.1e-110 402.9 352 61.9
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 7.7e-85 318.9 352 54.5
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 7.2e-83 312.4 553 41.8
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 1.6e-82 311.2 252 66.3
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 8.0e-82 308.9 234 71.4
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 1.0e-81 308.5 195 79.0
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 5.0e-76 289.7 157 90.4
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 5.0e-76 289.7 161 88.2
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 4.7e-74 283.1 335 54.3
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 6.3e-71 272.7 164 81.7
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 7.3e-67 259.2 419 43.2
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 2.7e-61 240.7 194 65.5
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 7.8e-61 239.2 282 50.4
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 9.2e-54 215.7 429 37.5
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 1.7e-52 211.5 172 66.3
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.2e-48 198.7 140 70.7
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 2.9e-47 194.1 436 32.8
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 1.9e-43 181.4 114 78.9
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 7.3e-43 179.5 121 77.7
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 8.1e-42 176.0 597 32.5
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 2.1e-37 161.4 162 58.0
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 2.0e-32 144.8 204 49.5
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 1.2e-29 135.6 70 92.9
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 1.2e-29 135.6 155 52.3
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 9.0e-25 119.4 112 58.0
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 5.8e-24 116.7 78 73.1
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.1e-22 112.5 68 83.8
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 3.5e-21 107.5 184 38.0
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 1.0e-20 105.9 58 89.7
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.9e-19 101.7 66 78.8
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 6.2e-18 96.7 69 71.0
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 6.5e-15 86.7 57 78.9
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 6.5e-15 86.7 86 52.3
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 1.1e-14 85.9 78 56.4
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 3.5e-13 80.9 85 50.6
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 6.0e-13 80.1 112 43.8
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 2.5e-11 74.7 46 84.8
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 1.6e-10 72.0 84 41.7
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.8e-10 71.2 64 62.5
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 2.6e-08 64.7 36 83.3
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 3.8e-07 60.8 63 49.2
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 1.1e-06 59.3 63 47.6


User provided reference genes

Program Settings