Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.2e-85 319.7 148 100.0
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 6.3e-39 164.5 171 58.5
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 2.5e-35 152.5 171 53.2
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 7.3e-35 151.0 171 53.2
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 1.2e-34 150.2 169 52.1
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.1e-34 149.4 171 50.9
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 2.1e-34 149.4 171 51.5
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.8e-34 149.1 171 51.5
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 3.6e-34 148.7 171 52.0
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 3.6e-34 148.7 171 51.5
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 4.7e-34 148.3 171 52.0
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 4.7e-34 148.3 171 50.3
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 8.0e-34 147.5 171 52.6
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 8.0e-34 147.5 169 51.5
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.0e-33 147.1 171 50.9
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.0e-33 147.1 171 49.7
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 1.4e-33 146.7 171 50.9
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 4.0e-33 145.2 171 49.7
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.0e-33 145.2 173 49.1
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 4.0e-33 145.2 171 51.5
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 4.0e-33 145.2 171 49.1
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 4.0e-33 145.2 171 50.9
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 5.2e-33 144.8 166 50.6
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 6.8e-33 144.4 171 49.7
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 6.8e-33 144.4 171 49.7
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 6.8e-33 144.4 171 51.5
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 6.8e-33 144.4 171 50.9
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 8.9e-33 144.1 172 50.6
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 8.9e-33 144.1 171 50.9
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 8.9e-33 144.1 171 50.3
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.2e-32 143.7 171 50.9
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.2e-32 143.7 171 49.7
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 1.2e-32 143.7 171 50.3
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.5e-32 143.3 171 50.3
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 2.0e-32 142.9 171 50.9
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 2.6e-32 142.5 171 49.7
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 2.6e-32 142.5 171 49.7
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 2.6e-32 142.5 172 50.6
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.6e-32 142.5 171 50.9
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.6e-32 142.5 171 49.7
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.6e-32 142.5 171 50.9
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 2.6e-32 142.5 172 51.7
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 2.6e-32 142.5 172 51.7
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 3.4e-32 142.1 172 50.6
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.4e-32 142.1 171 50.3
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 4.4e-32 141.7 173 49.1
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.4e-32 141.7 171 49.7
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 4.4e-32 141.7 171 48.5
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 5.8e-32 141.4 171 49.7
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 5.8e-32 141.4 171 49.7
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 5.8e-32 141.4 171 49.7
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.8e-32 141.4 171 49.7
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.8e-32 141.4 171 49.7
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 5.8e-32 141.4 185 47.0
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 5.8e-32 141.4 171 49.7
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 7.5e-32 141.0 171 48.0
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 9.8e-32 140.6 171 50.9
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 9.8e-32 140.6 164 50.0
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 9.8e-32 140.6 164 50.0
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.3e-31 140.2 172 48.8
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 1.3e-31 140.2 171 49.1
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 1.7e-31 139.8 168 49.4
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.7e-31 139.8 171 49.7
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.7e-31 139.8 171 49.7
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 1.7e-31 139.8 164 49.4
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 1.7e-31 139.8 171 48.5
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.7e-31 139.8 172 49.4
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 2.2e-31 139.4 171 49.7
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.9e-31 139.0 163 50.3
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 4.9e-31 138.3 169 48.5
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 4.9e-31 138.3 171 48.0
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 6.4e-31 137.9 166 49.4
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.4e-31 137.9 159 51.6
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 8.3e-31 137.5 169 48.5
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 8.3e-31 137.5 171 48.0
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 1.1e-30 137.1 169 48.5
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.1e-30 137.1 175 48.0
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.4e-30 136.7 171 47.4
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.4e-30 136.7 170 47.1
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 1.4e-30 136.7 167 49.1
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.4e-30 136.7 169 48.5
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 1.4e-30 136.7 171 47.4
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 1.4e-30 136.7 171 47.4
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.9e-30 136.3 171 47.4
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 2.4e-30 136.0 169 47.9
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 2.4e-30 136.0 169 47.9
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 2.4e-30 136.0 169 47.9
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 2.4e-30 136.0 175 47.4
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 2.4e-30 136.0 169 49.1
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 2.4e-30 136.0 171 46.8
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.2e-30 135.6 171 47.4
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 5.4e-30 134.8 169 47.3
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 7.0e-30 134.4 169 47.3
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 7.0e-30 134.4 169 47.3
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 7.0e-30 134.4 171 48.0
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 7.0e-30 134.4 169 47.9
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 9.2e-30 134.0 171 48.5
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 1.2e-29 133.7 171 46.8
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.6e-29 133.3 171 47.4
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 1.6e-29 133.3 171 46.8
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 1.6e-29 133.3 175 46.9
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 2.0e-29 132.9 172 44.2
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 2.0e-29 132.9 171 46.8
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 6.0e-29 131.3 171 46.8
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 7.8e-29 131.0 162 46.3
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 7.8e-29 131.0 171 46.8
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.3e-28 130.2 200 43.0
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 2.3e-28 129.4 171 46.8
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 2.3e-28 129.4 216 40.3
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 3.9e-28 128.6 175 45.7
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.6e-28 127.9 174 42.5
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.9e-27 126.3 172 43.0
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 4.3e-27 125.2 171 44.4
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 5.6e-27 124.8 172 42.4
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 7.3e-27 124.4 165 44.8
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 7.3e-27 124.4 167 46.1
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 3.6e-26 122.1 210 40.0
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 4.7e-26 121.7 171 43.3
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 2.3e-25 119.4 203 39.9
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 1.5e-24 116.7 152 48.0
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 2.0e-24 116.3 179 43.0
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 2.0e-24 116.3 169 42.6
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 4.4e-24 115.2 175 41.7
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 9.8e-24 114.0 163 44.2
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 1.3e-23 113.6 157 47.1
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 2.9e-23 112.5 167 42.5
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 6.4e-23 111.3 167 43.7
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.1e-22 108.6 171 39.2
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.2e-21 107.1 171 38.6
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 6.6e-20 101.3 162 42.0
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 1.5e-19 100.1 91 60.4
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.5e-19 99.4 152 39.5
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 2.1e-18 96.3 244 29.5
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 4.7e-18 95.1 88 60.2
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 4.1e-14 82.0 100 48.0
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 1.6e-13 80.1 186 30.6
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 5.6e-11 71.6 76 53.9
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 8.9e-09 64.3 111 36.9
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 2.0e-08 63.2 50 68.0
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 4.9e-07 58.5 54 50.0
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 1.4e-06 57.0 55 47.3
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 1.4e-06 57.0 51 54.9
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 2.4e-06 56.2 44 65.9


User provided reference genes

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