Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0609G052 Amborella trichopoda HOM05D003658 ORTHO05D004457 3.7e-64 248.1 124 100.0
ATR0561G124 Amborella trichopoda HOM05D003658 ORTHO05D004457 8.7e-58 226.9 120 95.0
MSTRG.24196 Avicennia marina HOM05D003658 ORTHO05D004457 3.7e-56 221.5 120 90.8
unitig_8.g4304 Utricularia gibba HOM05D003658 ORTHO05D004457 8.2e-56 220.3 120 91.7
SalBow6G4004 Salvia bowleyana HOM05D003658 ORTHO05D004457 1.1e-55 219.9 120 91.7
Cc10_g16400 Coffea canephora HOM05D003658 ORTHO05D004457 1.8e-55 219.2 120 91.7
MSTRG.22380 Avicennia marina HOM05D003658 ORTHO05D004457 2.4e-55 218.8 120 90.8
SGA_v2.0_scaffold19G08651 Striga asiatica HOM05D003658 ORTHO05D004457 2.4e-55 218.8 120 91.7
Actinidia03749 Actinidia chinensis HOM05D003658 ORTHO05D004457 4.1e-55 218.0 120 90.0
Lj4A607T48 Lonicera japonica HOM05D003658 ORTHO05D004457 5.3e-55 217.6 120 90.8
Solyc06g075340.4 Solanum lycopersicum HOM05D003658 ORTHO05D004457 9.0e-55 216.9 120 90.8
Sopen06g031760 Solanum pennellii HOM05D003658 ORTHO05D004457 9.0e-55 216.9 120 90.8
MBI17_g19523_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 1.2e-54 216.5 120 90.0
MBI17_g43655_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 1.2e-54 216.5 120 90.0
Nn2g13001 Nelumbo nucifera HOM05D003658 ORTHO05D004457 1.5e-54 216.1 120 90.0
Oeu046772.1 Olea europaea HOM05D003658 ORTHO05D004457 1.5e-54 216.1 120 90.0
PGR031G3879 Punica granatum HOM05D003658 ORTHO05D004457 1.5e-54 216.1 120 89.2
TAR623G0185 Trochodendron aralioides HOM05D003658 ORTHO05D004457 1.5e-54 216.1 120 90.0
COL.COLO4_32786 Corchorus olitorius HOM05D003658 ORTHO05D004457 2.6e-54 215.3 120 89.2
Duzib170G0243 Durio zibethinus HOM05D003658 ORTHO05D004457 2.6e-54 215.3 120 89.2
Nitab4.5_0000106g0020 Nicotiana tabacum HOM05D003658 ORTHO05D004457 2.6e-54 215.3 120 90.0
Nitab4.5_0010960g0010 Nicotiana tabacum HOM05D003658 ORTHO05D004457 2.6e-54 215.3 120 90.0
Nn3g19734 Nelumbo nucifera HOM05D003658 ORTHO05D004457 3.4e-54 214.9 120 89.2
Dinv32798 Davidia involucrata HOM05D003658 ORTHO05D004457 4.5e-54 214.5 120 88.3
Peaxi162Scf00072g00510 Petunia axillaris HOM05D003658 ORTHO05D004457 4.5e-54 214.5 120 89.2
Hund30148 Selenicereus undatus HOM05D003658 ORTHO05D004457 4.5e-54 214.5 120 89.2
Hund30149 Selenicereus undatus HOM05D003658 ORTHO05D004457 4.5e-54 214.5 120 89.2
TAR369G0890 Trochodendron aralioides HOM05D003658 ORTHO05D004457 4.5e-54 214.5 120 89.2
Lsat_1_v5_gn_9_7920 Lactuca sativa HOM05D003658 ORTHO05D004457 5.8e-54 214.2 120 89.2
Thecc.07G099900 Theobroma cacao HOM05D003658 ORTHO05D004457 5.8e-54 214.2 120 88.3
CAN.G1001.10 Capsicum annuum HOM05D003658 ORTHO05D004457 7.6e-54 213.8 120 89.2
ClCG09G021680 Citrullus lanatus HOM05D003658 ORTHO05D004457 7.6e-54 213.8 120 88.3
MELO3C013218.2 Cucumis melo HOM05D003658 ORTHO05D004457 7.6e-54 213.8 120 88.3
CsaV3_7G021350 Cucumis sativus L. HOM05D003658 ORTHO05D004457 7.6e-54 213.8 120 88.3
HanXRQChr09g0251621 Helianthus annuus HOM05D003658 ORTHO05D004457 7.6e-54 213.8 120 90.0
PGSC0003DMG400007504 Solanum tuberosum HOM05D003658 ORTHO05D004457 7.6e-54 213.8 120 89.2
vmacro14471 Vaccinium macrocarpon HOM05D003658 ORTHO05D004457 7.6e-54 213.8 120 89.2
AT1G29900 Arabidopsis thaliana HOM05D003658 ORTHO05D004457 1.0e-53 213.4 120 89.2
Migut.N03234 Erythranthe guttata HOM05D003658 ORTHO05D004457 1.0e-53 213.4 120 88.3
Actinidia07110 Actinidia chinensis HOM05D003658 ORTHO05D004457 1.3e-53 213.0 120 87.5
arahy.Tifrunner.gnm1.ann1.HT4L1Y Arachis hypogaea HOM05D003658 ORTHO05D004457 1.7e-53 212.6 120 86.7
arahy.Tifrunner.gnm1.ann1.Z66RMF Arachis hypogaea HOM05D003658 ORTHO05D004457 1.7e-53 212.6 120 86.7
EL10Ac1g00972 Beta vulgaris HOM05D003658 ORTHO05D004457 2.2e-53 212.2 120 87.5
CSS0048503 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 2.2e-53 212.2 120 87.5
CSS0000103 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 2.9e-53 211.8 120 86.7
CSS0002392 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 2.9e-53 211.8 120 86.7
Duzib213G0488 Durio zibethinus HOM05D003658 ORTHO05D004457 2.9e-53 211.8 120 87.5
ECA234G0865 Erigeron canadensis HOM05D003658 ORTHO05D004457 2.9e-53 211.8 120 87.5
Rhsim01G0220800 Rhododendron simsii HOM05D003658 ORTHO05D004457 2.9e-53 211.8 120 87.5
MD11G1125100 Malus domestica HOM05D003658 ORTHO05D004457 3.8e-53 211.5 120 87.5
QL01p036935 Quercus lobata HOM05D003658 ORTHO05D004457 3.8e-53 211.5 120 86.7
AL1G43750 Arabidopsis lyrata HOM05D003658 ORTHO05D004457 5.0e-53 211.1 120 87.5
Carub.0001s2812 Capsella rubella HOM05D003658 ORTHO05D004457 5.0e-53 211.1 120 87.5
DCAR_026092 Daucus carota HOM05D003658 ORTHO05D004457 5.0e-53 211.1 120 88.3
Thhalv10006598m.g Eutrema salsugineum HOM05D003658 ORTHO05D004457 5.0e-53 211.1 120 88.3
HanXRQChr15g0493841 Helianthus annuus HOM05D003658 ORTHO05D004457 5.0e-53 211.1 120 88.3
Sp1g25780 Schrenkiella parvula HOM05D003658 ORTHO05D004457 5.0e-53 211.1 120 87.5
THA.LOC104826356 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 5.0e-53 211.1 120 87.5
DCAR_016522 Daucus carota HOM05D003658 ORTHO05D004457 6.5e-53 210.7 120 87.5
Gohir.A01G060300 Gossypium hirsutum HOM05D003658 ORTHO05D004457 6.5e-53 210.7 120 86.7
Gohir.D01G046800 Gossypium hirsutum HOM05D003658 ORTHO05D004457 6.5e-53 210.7 120 86.7
Gorai.002G066300 Gossypium raimondii HOM05D003658 ORTHO05D004457 6.5e-53 210.7 120 86.7
THA.LOC104800615 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 6.5e-53 210.7 120 87.5
TWI31G0613 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 6.5e-53 210.7 120 86.7
arahy.Tifrunner.gnm1.ann1.F0P9EH Arachis hypogaea HOM05D003658 ORTHO05D004457 8.4e-53 210.3 120 85.0
arahy.Tifrunner.gnm1.ann1.YNZQ4S Arachis hypogaea HOM05D003658 ORTHO05D004457 8.4e-53 210.3 120 85.0
BcaC05g27003 Brassica carinata HOM05D003658 ORTHO05D004457 8.4e-53 210.3 120 87.5
A09p36600 Brassica napus HOM05D003658 ORTHO05D004457 8.4e-53 210.3 120 87.5
C05p28660 Brassica napus HOM05D003658 ORTHO05D004457 8.4e-53 210.3 120 87.5
BolC5t31587H Brassica oleracea HOM05D003658 ORTHO05D004457 8.4e-53 210.3 120 87.5
BraA09t39180Z Brassica rapa HOM05D003658 ORTHO05D004457 8.4e-53 210.3 120 87.5
CDE02G3705 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 8.4e-53 210.3 120 88.3
CDE08G0949 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 8.4e-53 210.3 120 87.5
Ciclev10027703m.g Citrus clementina HOM05D003658 ORTHO05D004457 8.4e-53 210.3 120 86.7
MD03G1111400 Malus domestica HOM05D003658 ORTHO05D004457 8.4e-53 210.3 120 87.5
AUR62004284 Chenopodium quinoa HOM05D003658 ORTHO05D004457 1.1e-52 209.9 120 87.5
Manes.04G025400 Manihot esculenta HOM05D003658 ORTHO05D004457 1.1e-52 209.9 120 86.7
BcaB07g32573 Brassica carinata HOM05D003658 ORTHO05D004457 1.4e-52 209.5 120 86.7
CSS0031195 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.4e-52 209.5 120 86.7
CARHR029540 Cardamine hirsuta HOM05D003658 ORTHO05D004457 1.4e-52 209.5 120 86.7
AUR62033373 Chenopodium quinoa HOM05D003658 ORTHO05D004457 1.4e-52 209.5 120 87.5
RcHm_v2.0_Chr7g0219181 Rosa chinensis HOM05D003658 ORTHO05D004457 1.4e-52 209.5 120 86.7
Ah.05g175890 Amaranthus hybridus HOM05D003658 ORTHO05D004457 1.9e-52 209.1 120 86.7
Aqoxy7G00983 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 2.5e-52 208.8 120 86.7
Potri.010G023100 Populus trichocarpa HOM05D003658 ORTHO05D004457 2.5e-52 208.8 121 87.6
Sabra10G0015500 Salix brachista HOM05D003658 ORTHO05D004457 2.5e-52 208.8 121 87.6
Sed0019661 Sechium edule HOM05D003658 ORTHO05D004457 2.5e-52 208.8 120 85.8
CANSAT35G1266 Cannabis sativa HOM05D003658 ORTHO05D004457 4.2e-52 208.0 120 85.8
Lalb_Chr24g0394441 Lupinus albus HOM05D003658 ORTHO05D004457 4.2e-52 208.0 120 84.2
arahy.Tifrunner.gnm1.ann1.1XIG7Z Arachis hypogaea HOM05D003658 ORTHO05D004457 5.5e-52 207.6 120 84.2
arahy.Tifrunner.gnm1.ann1.SY27G3 Arachis hypogaea HOM05D003658 ORTHO05D004457 5.5e-52 207.6 120 84.2
Sc12g0008310 Simmondsia chinensis HOM05D003658 ORTHO05D004457 5.5e-52 207.6 120 87.5
Atru.chr3.3712 Acer truncatum HOM05D003658 ORTHO05D004457 7.2e-52 207.2 120 85.8
Aa31LG4G17270 Aethionema arabicum HOM05D003658 ORTHO05D004457 7.2e-52 207.2 120 85.8
Lalb_Chr22g0350161 Lupinus albus HOM05D003658 ORTHO05D004457 7.2e-52 207.2 120 84.2
Prupe.6G093800 Prunus persica HOM05D003658 ORTHO05D004457 7.2e-52 207.2 120 85.0
TWI75G0848 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 7.2e-52 207.2 120 85.0
Nn2g10669 Nelumbo nucifera HOM05D003658 ORTHO05D004457 9.3e-52 206.8 120 85.8
PSO782G2702 Papaver somniferum HOM05D003658 ORTHO05D004457 1.2e-51 206.5 120 86.7
Sed0011385 Sechium edule HOM05D003658 ORTHO05D004457 1.2e-51 206.5 120 85.8
Glyma.13G328600 Glycine max HOM05D003658 ORTHO05D004457 1.6e-51 206.1 120 84.2
Lalb_Chr14g0374811 Lupinus albus HOM05D003658 ORTHO05D004457 1.6e-51 206.1 120 84.2
Phvul.005G137400 Phaseolus vulgaris HOM05D003658 ORTHO05D004457 2.1e-51 205.7 120 84.2
RcHm_v2.0_Chr2g0124141 Rosa chinensis HOM05D003658 ORTHO05D004457 2.1e-51 205.7 120 85.0
Haze_23933 Corylus avellana HOM05D003658 ORTHO05D004457 2.7e-51 205.3 120 84.2
FAN28G2851 Fragaria x ananassa HOM05D003658 ORTHO05D004457 2.7e-51 205.3 120 85.0
FvH4_1g25660 Fragaria vesca HOM05D003658 ORTHO05D004457 3.5e-51 204.9 120 84.2
FAN26G3193 Fragaria x ananassa HOM05D003658 ORTHO05D004457 3.5e-51 204.9 120 84.2
Glyma.15G045100 Glycine max HOM05D003658 ORTHO05D004457 3.5e-51 204.9 120 83.3
SMO116G0226 Selaginella moellendorffii HOM05D003658 ORTHO05D004457 3.5e-51 204.9 120 85.8
VMungo1080G1458 Vigna mungo HOM05D003658 ORTHO05D004457 3.5e-51 204.9 120 84.2
Nitab4.5_0010336g0040 Nicotiana tabacum HOM05D003658 ORTHO05D004457 7.9e-51 203.8 115 87.8
HPP92_005503 Vanilla planifolia HOM05D003658 ORTHO05D004457 7.9e-51 203.8 120 84.2
Eucgr.F04457 Eucalyptus grandis HOM05D003658 ORTHO05D004457 1.0e-50 203.4 120 84.2
Cfa011371 Carpinus fangiana HOM05D003658 ORTHO05D004457 1.8e-50 202.6 120 82.5
Lj3g0017853 Lotus japonicus HOM05D003658 ORTHO05D004457 2.3e-50 202.2 120 82.5
CiPaw.13G106400 Carya illinoinensis HOM05D003658 ORTHO05D004457 3.9e-50 201.4 120 85.0
Cfa011369 Carpinus fangiana HOM05D003658 ORTHO05D004457 1.1e-49 199.9 120 81.7
Zm00001eb160030 Zea mays HOM05D003658 ORTHO05D004457 1.5e-49 199.5 120 83.3
Zm00001eb440860 Zea mays HOM05D003658 ORTHO05D004457 1.5e-49 199.5 120 83.3
Mapoly0126s0034 Marchantia polymorpha HOM05D003658 ORTHO05D004457 1.9e-49 199.1 120 84.2
Zm00001eb356970 Zea mays HOM05D003658 ORTHO05D004457 2.5e-49 198.7 120 83.3
Pp3c1_18250 Physcomitrium patens HOM05D003658 ORTHO05D004457 7.4e-49 197.2 120 83.3
CBR_g16075 Chara braunii HOM05D003658 ORTHO05D004457 2.2e-48 195.7 120 80.8
AagrBONN_evm.TU.Sc2ySwM_228.578 Anthoceros agrestis HOM05D003658 ORTHO05D004457 2.8e-48 195.3 120 82.5
Ca_01436_v3 Cicer arietinum L. HOM05D003658 ORTHO05D004457 2.8e-48 195.3 120 81.7
SHI06033 Sapria himalayana HOM05D003658 ORTHO05D004457 2.8e-48 195.3 120 79.2
Pp3c2_19430 Physcomitrium patens HOM05D003658 ORTHO05D004457 8.2e-48 193.7 120 79.2
Medtr2g093280 Medicago truncatula HOM05D003658 ORTHO05D004457 1.4e-47 193.0 120 80.8
TPR.G11612 Trifolium pratense HOM05D003658 ORTHO05D004457 3.1e-47 191.8 120 80.0
Glyma.20G148821 Glycine max HOM05D003658 ORTHO05D004457 4.1e-47 191.4 120 77.5
Psat5g277200 Pisum sativum HOM05D003658 ORTHO05D004457 4.1e-47 191.4 120 80.0
MD12G1166200 Malus domestica HOM05D003658 ORTHO05D004457 1.3e-45 186.4 120 78.3
MCO07G210 Micromonas commoda HOM05D003658 ORTHO05D004457 3.2e-44 181.8 120 74.2
PRCOL_00001523 Prasinoderma coloniale HOM05D003658 ORTHO05D004457 2.3e-42 175.6 120 73.3
GSVIVG01025125001 Vitis vinifera HOM05D003658 ORTHO05D004457 1.1e-39 166.8 101 82.2
Oeu047812.2 Olea europaea HOM05D003658 ORTHO05D004457 4.1e-39 164.9 97 84.5
Cre08.g358580 Chlamydomonas reinhardtii HOM05D003658 ORTHO05D004457 5.3e-39 164.5 120 69.2
Dinv14502 Davidia involucrata HOM05D003658 ORTHO05D004457 3.8e-37 158.3 90 88.9
TAR633G0489 Trochodendron aralioides HOM05D003658 ORTHO05D004457 3.2e-36 155.2 107 74.8
Haze_26994 Corylus avellana HOM05D003658 ORTHO05D004457 1.7e-29 132.9 89 70.8
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 4.2e-28 128.3 120 53.3
Actinidia24075 Actinidia chinensis HOM05D003658 ORTHO05D004457 2.0e-25 119.4 92 62.0
Cpa.g.sc81.16 Carica papaya HOM05D003658 ORTHO05D004457 5.7e-25 117.9 69 79.7
Nitab4.5_0000816g0110 Nicotiana tabacum HOM05D003658 ORTHO05D004457 3.7e-24 115.2 120 55.8
Cfa022738 Carpinus fangiana HOM05D003658 ORTHO05D004457 7.0e-23 110.9 117 47.9
Peaxi162Scf00809g00417 Petunia axillaris HOM05D003658 ORTHO05D004457 1.6e-22 109.8 75 81.3
Haze_26134 Corylus avellana HOM05D003658 ORTHO05D004457 1.5e-20 103.2 120 43.3
CAN.G916.7 Capsicum annuum HOM05D003658 ORTHO05D003835 8.0e-19 97.4 58 87.9
Sc12g0005830 Simmondsia chinensis HOM05D003658 ORTHO05D004457 1.0e-13 80.5 46 87.0
CAN.G185.26 Capsicum annuum HOM05D000875 ORTHO05D000684 6.5e-13 77.8 52 78.8
Lj4C607T13 Lonicera japonica HOM05D003658 ORTHO05D004457 1.3e-08 63.5 120 30.0
Nn3g17258 Nelumbo nucifera HOM05D003658 ORTHO05D004457 1.3e-08 63.5 50 70.0
CAN.G1001.11 Capsicum annuum HOM05D003658 ORTHO05D004457 2.4e-07 59.3 112 28.6
Dinv14501 Davidia involucrata HOM05D003658 ORTHO05D004457 5.4e-07 58.2 122 26.2


User provided reference genes

Program Settings