Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 3465.2 1864 100.0
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2134.8 1990 61.8
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2081.2 1952 62.4
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2045.0 1941 62.0
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2011.9 1837 61.5
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2005.7 1892 62.0
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 1992.2 1939 60.0
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 1982.2 1934 60.6
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1971.4 1966 58.7
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1971.1 1957 59.2
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1970.7 1827 60.6
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 1962.6 1945 59.1
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 1962.2 1913 61.0
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 1958.0 1878 59.6
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 1955.3 1936 59.9
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1952.6 1917 60.3
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1942.5 1800 60.6
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1941.8 1796 60.6
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1940.2 1815 59.6
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1939.9 1793 60.4
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1937.5 1766 61.1
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1936.8 1858 59.2
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1935.2 1803 59.5
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1931.0 1823 59.7
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1928.3 1944 58.0
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1923.7 1924 58.8
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1922.9 1925 58.7
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1922.5 1822 59.9
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1921.0 1893 59.5
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1920.2 1918 59.0
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1920.2 1841 59.4
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1915.6 1838 60.4
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1912.9 1799 60.1
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1912.1 1668 63.4
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1911.3 1991 58.1
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1909.0 1893 59.7
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1907.5 1893 59.6
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1906.7 1792 60.5
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1905.6 1934 57.7
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1903.6 1913 59.2
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1899.4 1935 58.3
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1895.9 1858 60.9
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1895.9 1919 57.7
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1895.2 1896 59.3
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1894.4 1938 57.7
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1893.6 1879 58.9
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1888.6 1823 58.0
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1886.3 1952 57.8
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1885.2 1918 58.3
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1884.0 1822 58.6
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1882.5 1971 57.6
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1876.7 1935 56.7
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1876.3 1815 58.1
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1876.3 1841 58.1
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1865.5 1956 57.2
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1862.0 1752 59.9
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1859.0 1905 58.5
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1859.0 1784 59.4
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1857.4 1931 55.7
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1857.4 1881 58.5
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1845.1 1920 57.6
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1844.7 1940 57.3
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1843.9 1833 57.2
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1841.2 1841 57.3
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1840.1 1813 57.4
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1835.1 1840 57.1
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1833.5 1842 56.7
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1833.2 1838 56.5
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1832.4 1806 57.9
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1830.8 1949 55.4
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1828.5 1893 57.6
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1825.8 1958 56.4
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1824.3 1909 58.1
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1822.4 1768 58.1
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1820.4 1798 57.6
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1804.6 1813 57.4
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1803.1 1858 56.0
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1802.7 1928 56.8
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1802.3 1838 57.2
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1790.4 1881 57.4
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1788.1 1802 56.9
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1777.7 1821 55.8
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1739.5 1786 57.6
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1726.5 1805 56.1
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1715.3 1905 54.9
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1714.1 1839 55.6
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1713.4 1857 54.4
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1700.6 1857 53.6
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1640.9 1959 52.3
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1640.6 1660 57.0
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1634.4 1836 51.9
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1612.8 1811 52.2
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1610.5 1810 52.0
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1609.3 1838 51.7
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1608.2 1819 51.7
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1606.7 1848 51.6
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1604.0 1828 51.3
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1602.8 1819 51.8
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1602.0 1807 52.0
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1598.6 1821 51.9
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1593.9 1823 51.6
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1593.9 1823 51.6
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1591.2 1840 51.1
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1588.5 1845 51.2
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1587.4 1855 50.8
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1577.8 1827 51.1
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1572.8 1930 50.0
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1568.9 1816 51.4
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1532.3 1877 50.0
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1532.3 1877 50.0
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1515.0 1846 50.8
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1430.2 1503 58.3
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1341.6 1246 59.6
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1313.9 1227 61.2
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1297.7 1784 46.7
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1275.8 1307 54.9
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1238.4 1221 58.8
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1232.2 1813 44.0
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1231.9 1837 44.0
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1097.0 1443 49.1
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1085.9 1086 58.9
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.6e-288 997.3 1618 41.7
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 9.7e-286 988.0 921 60.5
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.2e-279 965.7 928 58.8
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.6e-267 927.5 801 66.4
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 3.2e-265 919.8 1301 47.3
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 9.8e-254 881.7 1432 43.4
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 1.3e-253 881.3 836 59.2
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 2.7e-251 873.6 871 57.9
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.2e-243 848.2 1768 35.4
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.5e-241 841.3 848 58.7
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.8e-202 711.4 647 59.4
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 1.9e-185 654.8 656 55.3
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.2e-174 619.0 499 63.9
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 4.5e-158 563.9 721 47.7
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.2e-145 522.7 618 49.7
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 1.3e-144 519.2 502 56.6
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.3e-140 504.2 341 69.5
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.1e-130 473.0 415 59.3
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.8e-121 440.7 414 56.5
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 2.7e-110 405.2 1211 28.7
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 3.3e-108 398.3 417 54.9
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 6.9e-90 337.4 1939 24.0
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 3.4e-81 308.5 438 45.2
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.8e-75 288.1 616 34.9
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.9e-72 278.9 829 32.4
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 5.0e-72 278.1 452 38.9
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.3e-64 253.4 445 37.3
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 2.7e-62 245.7 433 41.1
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 1.5e-60 240.0 161 71.4
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.5e-57 229.9 222 59.5
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 1.7e-51 209.9 166 69.3
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 2.0e-41 176.4 264 42.8
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 4.8e-35 155.2 230 47.4
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 2.6e-28 132.9 185 63.8
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 4.7e-14 85.5 63 66.7
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 4.7e-14 85.5 83 53.0
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.1e-10 74.3 45 64.4
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 2.4e-10 73.2 98 49.0
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.3e-08 67.4 33 81.8
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.7e-08 67.0 158 39.9
MBI08_g04317_MAGBIO Magnolia biondii HOM05D000887 ORTHO05D018021 9.5e-07 61.2 44 72.7
MBI05_g22526_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D018021 2.1e-06 60.1 44 70.5
MBI05_g34595_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 2.1e-06 60.1 44 70.5
MBI17_g23594_MAGBIO Magnolia biondii HOM05D000887 ORTHO05D018021 4.7e-06 58.9 44 70.5
MBI14_g11886_MAGBIO Magnolia biondii HOM05D056533 ORTHO05D018021 8.1e-06 58.2 44 68.2


User provided reference genes

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