Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 1.9e-206 722.2 358 100.0
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.3e-125 453.8 322 71.4
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 6.3e-125 451.4 347 69.5
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 1.4e-124 450.3 325 70.5
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 5.0e-122 441.8 345 65.2
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 4.2e-121 438.7 349 67.0
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 2.1e-120 436.4 348 64.7
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 2.7e-120 436.0 279 75.6
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 3.6e-120 435.6 348 66.4
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 6.1e-120 434.9 324 70.1
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 1.0e-119 434.1 350 63.1
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.0e-119 434.1 350 62.9
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 1.0e-119 434.1 283 75.6
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 1.4e-119 433.7 283 75.3
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 3.3e-118 429.1 350 65.1
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 4.4e-118 428.7 277 75.5
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 4.4e-118 428.7 277 75.5
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 4.4e-118 428.7 327 68.8
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 4.4e-118 428.7 271 76.4
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 5.7e-118 428.3 350 63.1
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 9.7e-118 427.6 277 75.1
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 1.7e-117 426.8 276 75.4
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 2.2e-117 426.4 277 75.1
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 2.2e-117 426.4 277 75.1
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 2.8e-117 426.0 277 75.1
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 2.8e-117 426.0 277 73.3
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 3.7e-117 425.6 277 74.7
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 1.4e-116 423.7 339 63.7
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 1.8e-116 423.3 346 63.6
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 4.1e-116 422.2 343 63.6
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 1.2e-115 420.6 320 65.6
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 2.0e-115 419.9 330 65.8
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 2.0e-115 419.9 348 64.1
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.6e-115 419.5 314 69.1
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 5.9e-115 418.3 346 63.3
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 5.9e-115 418.3 278 71.9
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 7.7e-115 417.9 275 73.8
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 1.0e-114 417.5 252 79.0
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 1.0e-114 417.5 324 66.0
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 2.2e-114 416.4 278 71.9
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 1.1e-113 414.1 281 72.6
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 1.9e-113 413.3 304 68.8
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 4.2e-113 412.1 314 66.2
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 4.2e-113 412.1 278 71.2
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 1.2e-112 410.6 276 73.6
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 1.0e-111 407.5 304 70.1
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 1.4e-111 407.1 336 63.1
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 3.0e-111 406.0 348 60.6
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 3.0e-111 406.0 345 62.0
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 8.8e-111 404.4 276 72.1
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.2e-110 404.1 314 65.3
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 1.5e-110 403.7 330 64.5
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.0e-110 403.3 314 65.6
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 2.6e-110 402.9 252 78.2
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 3.3e-110 402.5 286 71.3
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 4.8e-109 398.7 324 65.7
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 4.8e-109 398.7 280 69.6
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 8.2e-109 397.9 275 71.3
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 1.8e-108 396.7 248 76.2
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 2.4e-108 396.4 288 70.1
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 5.3e-108 395.2 253 75.1
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 1.6e-107 393.7 225 82.2
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 1.6e-107 393.7 245 78.0
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 2.0e-107 393.3 310 65.2
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 2.7e-107 392.9 285 67.7
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 7.7e-107 391.3 225 82.2
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 7.7e-107 391.3 283 69.3
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 1.7e-106 390.2 226 80.5
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 1.7e-106 390.2 222 83.3
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 5.0e-106 388.7 313 63.6
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 8.5e-106 387.9 320 63.8
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 8.5e-106 387.9 312 63.1
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 1.9e-105 386.7 225 80.4
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 3.2e-105 386.0 223 82.1
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 4.2e-105 385.6 350 60.9
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 7.2e-105 384.8 268 71.3
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 7.2e-105 384.8 268 71.3
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 9.4e-105 384.4 284 68.7
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 3.6e-104 382.5 323 62.8
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 8.0e-104 381.3 226 79.2
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 2.2e-101 373.2 278 68.3
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 3.1e-100 369.4 293 65.9
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 1.1e-97 360.9 276 65.9
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 1.4e-95 354.0 206 82.0
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 7.5e-94 348.2 337 57.9
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 3.8e-90 335.9 336 57.4
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 5.6e-89 332.0 225 68.4
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 7.3e-89 331.6 225 68.4
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 1.6e-88 330.5 257 62.3
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 3.0e-87 326.2 350 55.1
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 7.5e-86 321.6 316 55.1
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 1.2e-83 314.3 256 64.1
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 6.0e-83 312.0 207 73.9
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.0e-82 311.2 347 51.9
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 5.6e-81 305.4 344 52.6
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 5.6e-81 305.4 499 41.5
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 1.1e-79 301.2 274 56.2
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 4.9e-77 292.4 277 58.5
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 7.0e-76 288.5 281 52.7
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 9.2e-76 288.1 171 80.1
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 1.2e-75 287.7 278 55.4
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.2e-70 271.2 167 77.8
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 3.7e-69 266.2 224 62.1
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 1.6e-59 234.2 144 78.5
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 2.1e-59 233.8 205 54.6
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.7e-58 230.7 241 53.9
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.6e-54 216.9 219 51.1
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.6e-54 216.9 212 55.2
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 4.9e-53 212.6 245 53.9
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 1.1e-52 211.5 118 79.7
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 2.3e-50 203.8 173 61.8
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 5.3e-47 192.6 162 63.6
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 3.8e-37 159.8 96 79.2
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 3.5e-35 153.3 109 70.6
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 6.2e-32 142.5 333 28.8
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.2e-27 128.3 155 47.1
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 2.7e-27 127.1 62 90.3
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 3.4e-22 110.2 134 51.5
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 7.2e-20 102.4 104 53.8
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.9e-12 77.8 43 88.4
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 7.4e-09 65.9 68 52.9
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 7.4e-09 65.9 68 52.9


User provided reference genes

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